EY711078

Overview
NameEY711078
Unique NameEY711078
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length907
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1516 contig Csv1_Contig1516:11..917. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_HELAN (40S ribosomal protein S3a OS=Helianthus annuus GN=RPS3A PE=2 SV=2)

HSP 1 Score: 370.933 bits (951), Expect = 5.466e-102
Identity = 183/222 (82.43%), Postives = 201/222 (90.54%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGDYXEDVGVKVDRPADE 813
            DWYDIKAPS F  RNVGKTL TRTQGT IAS+GL HRVFEVSL DL N+E+H+YRKI L AEDVQGKNVLTNFWGM+ TTDKLRSLV+KW +LIEA+VDVKTTDNFTLR+FCIGFTK+  NQVKRTCYAQ+SQI+QIRRKMREIMV QA +CDLK LV+KFI E IGREIEKATSSIYPLQNVFIRKVKILKAP+FD+GKLM VHGDY EDVGVK+DRPA+E
Sbjct:   28 DWYDIKAPSLFITRNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQNDEDHSYRKIRLRAEDVQGKNVLTNFWGMDVTTDKLRSLVKKWQSLIEAHVDVKTTDNFTLRMFCIGFTKKRANQVKRTCYAQSSQIKQIRRKMREIMVTQAQTCDLKELVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPAEE 249          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_CICAR (40S ribosomal protein S3a OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 366.311 bits (939), Expect = 1.346e-100
Identity = 181/226 (80.09%), Postives = 204/226 (90.27%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGDYXEDVGVKVDRPADEPMLK 825
            DWYDIKAPS F+V+NVGKTL +RTQGT IAS+GL HRVFE+SL DL  +E++A+RKI L AEDVQGKNVLTNF+GM+FTTDKLRSLVRKW TLIEA+VDVKTTDN+TLR+FCIGFTKR  NQVKRTCYAQ+SQIRQIRRKMREIMV QA SCDLK LV KFI E+IG+EIEKATSSIYPLQNVFIRKVKILK+P+FDLGKLM VHGDY EDVG KV+ PADE +++
Sbjct:   28 DWYDIKAPSVFQVKNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQGDEDNAFRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRMFCIGFTKRRSNQVKRTCYAQSSQIRQIRRKMREIMVNQATSCDLKELVRKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKSPKFDLGKLMEVHGDYSEDVGTKVESPADETVVE 253          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A1_VITVI (40S ribosomal protein S3a-1 OS=Vitis vinifera GN=GSVIVT00020038001 PE=3 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 1.140e-99
Identity = 180/224 (80.36%), Postives = 198/224 (88.39%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGDYXEDVGVKVDRPADEPM 819
            DWYDIKAPS F VRNVGKTL +RTQGT IAS+GL HRVFE+SL DL  +E+ AYRKI L AEDVQG+NVLTNFWGM+FTTDKLRSLVRKW TLIEA+VDVKTTDN+TLRLFCI FTK+  NQ K+TCYAQ+SQIRQIRRKMREIM   A SCDLK LV+KFI E IGREIEKATSSIYPLQNV+IRKVKILKAP+FDLGKLM VHGDY EDVG K++RPADEP+
Sbjct:   28 DWYDIKAPSVFEVRNVGKTLVSRTQGTKIASEGLKHRVFEISLADLQADEDQAYRKIRLRAEDVQGRNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCIAFTKKRVNQNKKTCYAQSSQIRQIRRKMREIMTNMATSCDLKELVKKFIPESIGREIEKATSSIYPLQNVYIRKVKILKAPKFDLGKLMEVHGDYSEDVGTKLERPADEPV 251          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_CATRO (40S ribosomal protein S3a OS=Catharanthus roseus GN=RPS3A PE=2 SV=4)

HSP 1 Score: 362.844 bits (930), Expect = 1.489e-99
Identity = 180/223 (80.72%), Postives = 200/223 (89.69%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGDYXE-DVGVKVDRPADE 813
            DWYDIKAPS F VRNVGKTL TRTQGT IAS+GL HRVFE+SL DL  +E+H++RKI L AED+QGKNVLTNFWGM+FTTDKLRSLVRKW +LIEA+VDVKTTD++TLR+FCIGFTK+  NQ KRTCYAQ+SQIRQIRRKMREIMV QA SCDLK LV+KFI E IGREIEKATSSIYPLQNVFIRKVKILKAP+FDLGKLM VHGDY E D+G K+DRPA+E
Sbjct:   28 DWYDIKAPSVFSVRNVGKTLVTRTQGTKIASEGLEHRVFEISLADLQGDEDHSFRKIRLRAEDIQGKNVLTNFWGMDFTTDKLRSLVRKWQSLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMREIMVNQAQSCDLKDLVQKFIPESIGREIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYNEDDIGTKLDRPAEE 250          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_ORYSJ (40S ribosomal protein S3a OS=Oryza sativa subsp. japonica GN=RPS3A PE=2 SV=2)

HSP 1 Score: 362.073 bits (928), Expect = 2.539e-99
Identity = 180/223 (80.72%), Postives = 198/223 (88.79%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGDY-XEDVGVKVDRPADE 813
            DWYDIKAPS F VRN+GKTL +RTQGT IAS+GL HRVFEVSL DL N+E+ AYRKI L AEDVQGKNVLTNFWGM+FTTDKLRSLV+KW TLIEA+VDVKTTD + LRLFCIGFTKR PNQVKRTCYAQ SQIRQIRRKM EIM  QA+SCDLK LV KFI EVIG+EIEKATSSI+PLQNVF+RKVKILKAP+FDLGKLM VHGDY  ED+G K+DRPA++
Sbjct:   28 DWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDLGKLMEVHGDYAKEDIGTKLDRPAED 250          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A2_ARATH (40S ribosomal protein S3a-2 OS=Arabidopsis thaliana GN=RPS3AB PE=2 SV=3)

HSP 1 Score: 358.607 bits (919), Expect = 2.807e-98
Identity = 180/227 (79.30%), Postives = 198/227 (87.22%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGDY-XEDVGVKVDRPADEPMLK 825
            DWYD+KAP  F  RNVGKTL +RTQGT IAS+GL HRVFEVSL DL N+E++AYRKI L AEDVQG+NVLT FWGM+FTTDKLRSLV+KW TLIEA+VDVKTTD +TLR+FCI FTKR  NQVKRTCYAQ+SQIRQIRRKM EIMV +A+SCDLK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAP+FDLGKLM VHGDY  EDVGVKVDRPADE M++
Sbjct:   28 DWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDEDNAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMSEIMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYTAEDVGVKVDRPADETMVE 254          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_TOBAC (40S ribosomal protein S3a OS=Nicotiana tabacum GN=cyc07 PE=2 SV=1)

HSP 1 Score: 358.221 bits (918), Expect = 3.667e-98
Identity = 177/222 (79.73%), Postives = 198/222 (89.19%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGDYXEDVGVKVDRPADE 813
            DWYDIKAPS F ++NVGKTL TRTQGT IAS+GL HRVFEVSL DL  +E+ ++RKI L AEDVQGKNVLTNFWGM+FTTDKLRSLV+KW TLIEA+VDVKTTD++TLR+FCI FTK+ PNQ KRTCYAQ+SQIRQIRRKM EIM  QA+SCDLK LV KFI E IGREIEKATSSI+PLQNV+IRKVKILKAP+FD+GKLM VHGDY EDVGVK+DRPADE
Sbjct:   28 DWYDIKAPSVFDIKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQKDEDQSFRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRMFCIAFTKKRPNQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVYIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLDRPADE 249          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A1_ARATH (40S ribosomal protein S3a-1 OS=Arabidopsis thaliana GN=RPS3AA PE=1 SV=3)

HSP 1 Score: 355.525 bits (911), Expect = 2.377e-97
Identity = 179/223 (80.27%), Postives = 196/223 (87.89%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGDY-XEDVGVKVDRPADE 813
            DWYD+KAPS F  RNVGKTL +RTQGT IAS+GL HRVFEVSL DL  +E++AYRKI L AEDVQG+NVL  FWGM+FTTDKLRSLV+KW TLIEA+VDVKTTD++TLRLFCI FTKR  NQVKRTCYAQ+SQIRQIRRKMR+IMV +A+SCDLK LV KFI E IGREIEKAT  IYPLQNVFIRKVKILKAP+FDLGKLM VHGDY  EDVGVKVDRPADE
Sbjct:   28 DWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDEDNAYRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRRKMRDIMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAPKFDLGKLMDVHGDYSAEDVGVKVDRPADE 250          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_DAUCA (40S ribosomal protein S3a OS=Daucus carota GN=cyc07 PE=2 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 7.645e-96
Identity = 175/226 (77.43%), Postives = 199/226 (88.05%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMVAQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGDYXEDVGVKVDRPADEPMLK 825
            DWYDIKAP+ F+ +NVGKTL +RTQGT IAS+GL HRVFEV L DL  +E+ AYRKI L AEDVQGKNVLTNF+GM+FTTDKLRSLVRKW TLIEA+VDVKTTD++TLR+FCIGFTK+  NQ KRTCYAQ+SQIRQIRRKM EIM  QA+SCDLK LV KFI E IGREIEKATSSI+PLQNVFIRKVKILKAP+FD+GKLM VHGDY EDVGVK++RP +E M++
Sbjct:   28 DWYDIKAPNVFQNKNVGKTLVSRTQGTKIASEGLKHRVFEVCLADLQGDEDQAYRKIRLRAEDVQGKNVLTNFYGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDSYTLRMFCIGFTKKRANQQKRTCYAQSSQIRQIRRKMVEIMRNQASSCDLKELVAKFIPESIGREIEKATSSIFPLQNVFIRKVKILKAPKFDIGKLMEVHGDYSEDVGVKLERPIEETMVE 253          
BLAST of EY711078 vs. ExPASy Swiss-Prot
Match: RS3A_BRARA (40S ribosomal protein S3a OS=Brassica rapa GN=RPS3A PE=2 SV=2)

HSP 1 Score: 345.895 bits (886), Expect = 1.883e-94
Identity = 177/224 (79.02%), Postives = 194/224 (86.61%), Query Frame = 1
Query:  148 DWYDIKAPSCFRVRNVGKTLGTRTQGTNIASKGLWHRVFEVSLGDLLNEEEHAYRKIILTAEDVQGKNVLTNFWGMNFTTDKLRSLVRKWHTLIEAYVDVKTTDNFTLRLFCIGFTKRLPNQVKRTCYAQTSQIRQIRRKMREIMV-AQAASCDLKSLVEKFIAEVIGREIEKATSSIYPLQNVFIRKVKILKAPQFDLGKLMXVHGDY-XEDVGVKVDRPADE 813
            DWYDIKAPS F  RNVGKTL +RTQGT IAS+GL HRVFEVSL DL  +E+ AYRKI L AEDVQG+NVLT FWGM+FTTDKLRSLV+KW TLIE++VDVKTTDN+TLRLFCI FTKR  NQVKRTCYAQ+SQIRQIR KMREIM+  +A+SCDLK LV KFI E IG++IEKAT  IYPLQNVFIRKVKILKAP+FDL KLM VHGDY  EDVGVKVDRPADE
Sbjct:   28 DWYDIKAPSSFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLNKDEDQAYRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIESHVDVKTTDNYTLRLFCIAFTKRRANQVKRTCYAQSSQIRQIRSKMREIMIKEEASSCDLKELVAKFIPESIGKDIEKATQGIYPLQNVFIRKVKILKAPKFDLRKLMEVHGDYTAEDVGVKVDRPADE 251          
The following BLAST results are available for this feature:
BLAST of EY711078 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
RS3A_HELAN5.466e-10282.4340S ribosomal protein S3a OS=Helianthus annuus GN=... [more]
RS3A_CICAR1.346e-10080.0940S ribosomal protein S3a OS=Cicer arietinum PE=2 ... [more]
RS3A1_VITVI1.140e-9980.3640S ribosomal protein S3a-1 OS=Vitis vinifera GN=G... [more]
RS3A_CATRO1.489e-9980.7240S ribosomal protein S3a OS=Catharanthus roseus G... [more]
RS3A_ORYSJ2.539e-9980.7240S ribosomal protein S3a OS=Oryza sativa subsp. j... [more]
RS3A2_ARATH2.807e-9879.3040S ribosomal protein S3a-2 OS=Arabidopsis thalian... [more]
RS3A_TOBAC3.667e-9879.7340S ribosomal protein S3a OS=Nicotiana tabacum GN=... [more]
RS3A1_ARATH2.377e-9780.2740S ribosomal protein S3a-1 OS=Arabidopsis thalian... [more]
RS3A_DAUCA7.645e-9677.4340S ribosomal protein S3a OS=Daucus carota GN=cyc0... [more]
RS3A_BRARA1.883e-9479.0240S ribosomal protein S3a OS=Brassica rapa GN=RPS3... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-E07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711078 ID=EY711078; Name=EY711078; organism=Citrus sinensis; type=EST; length=907bp
CGGACGCGTGGTCCAACTAAGACTACGTAGCATCGGAGCCGTCTCTTGAG
CAGCAGCTGCACAAACATGGCTGGCGGGAAGAACAAGAGGATTTCAAAGG
GGAAGAAAGGAGGCTAGAAGAAGGCTGCTGATCCGCTTGCCAAGAAGGAC
TGGTATGATATCAAGGCTCCATCTTGTTTCCGCGTCAGAAATGTTGGCAA
GACTCTTGGTACCCGGACTCAGGGGACCAATATTGCATCAAAAGGGCTCT
GGCACAGAGTGTTTGAGGTATCACTAGGTGATCTTCTCAATGAAGAAGAG
CATGCTTACAGGAAGATCATACTGACAGCTGAAGATGTCCAAGGGAAGAA
TGTTTTGACTAACTTCTGGGGCATGAATTTCACTACAGACAAGCTGAGGT
CTTTGGTTAGGAAGTGGCATACCTTGATTGAAGCTTACGTGGATGTCAAG
ACCACTGATAACTTCACATTGAGGTTGTTCTGCATTGGATTCACCAAGAG
ACTTCCAAACCAGGTTAAGAGGACTTGCTACGCACAGACCAGCCAGATTA
GACAGATTCGCCGCAAGATGAGGGAGATCATGGTTGCTCAGGCAGCATCT
TGTGATCTTAAGAGCTTGGTCGAAAAGTTCATTGCTGAAGTGATTGGAAG
AGAGATTGAGAAGGCAACGTCAAGCATATACCCCTTACAAAATGTGTTCA
TTCGCAAAGTGAAGATCCTGAAAGCTCCCCAGTTTGATCTTGGAAAATTG
ATGGANGTTCACGGTGATTACTNCGAAGATGTTGGTGTGAAGGTGGATAG
GCCAGCTGATGAGCCCATGCTGAAGCACAACTNGAGTGATTGGAGCTTTG
ACGTGAATGAGAAAATTTTCTAGTTTTGTTTTCCTACTATCTGATCTGGG
CAGTTTG
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