EY711077

Overview
NameEY711077
Unique NameEY711077
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig806 contig Csv1_Contig806:176..898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RK6_ARATH (50S ribosomal protein L6, chloroplastic OS=Arabidopsis thaliana GN=RPL6 PE=1 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.866e-77
Identity = 142/173 (82.08%), Postives = 159/173 (91.91%), Query Frame = 3
Query:   12 KESRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDS-FLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            KESRIGKQPI VPSNVTI L GQDLKVKGPLGEL+L YPREV++ +E+S FLRV+KTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKL +VGVGYRA ++G+ LVL+LGFSHPV+M IPD +KV VEENTRITVSGYDKS IGQFAA++RKWRPPEPYKGKGVKY DE++RR
Sbjct:   42 KESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPREVELTKEESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVLNLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYKGKGVKYSDEIVRR 214          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_CYAA5 (50S ribosomal protein L6 OS=Cyanothece sp. (strain ATCC 51142) GN=rplF PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.105e-48
Identity = 93/170 (54.71%), Postives = 121/170 (71.18%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI +P+ VTI + GQ + VKGP G L L  P EV V++E   + V++  ++R A + HGLFRTL  NM+ GVS+GFEK+L + GVGYRA  +G  L L++G+S PV MT+P GI V VE NT++ VSG DK  +G  AA IR  RPPEPYKGKG++Y DE +RR
Sbjct:    2 SRIGKKPIPLPNKVTIDIKGQHIAVKGPKGSLELDLPSEVTVNQEGETVEVQRVDDSRTARERHGLFRTLVANMIQGVSQGFEKRLNIQGVGYRAQAQGSKLTLNVGYSKPVEMTMPQGINVAVENNTQVVVSGIDKEIVGNIAAKIRGVRPPEPYKGKGIRYQDEYVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_CYAP7 (50S ribosomal protein L6 OS=Cyanothece sp. (strain PCC 7424) GN=rplF PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.180e-47
Identity = 93/170 (54.71%), Postives = 121/170 (71.18%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI +P+ VT+ + G  + VKGP GEL    P  V V++++  LRV +  ++R A Q HGL RTL  NMV GVSKGFEK+L++ GVGYRAA +G  L L++G+S PV M +P GI V VE+NT IT++G DK  +G  AA IR  RPPEPYKGKG++Y  EV+RR
Sbjct:    2 SRIGKRPITIPNKVTVNIDGSHVAVKGPKGELQRTLPTLVIVEQDEGVLRVVRQDDSRTARQRHGLCRTLVSNMVEGVSKGFEKRLEIQGVGYRAAAQGSKLTLNVGYSKPVEMDMPSGIGVAVEKNTEITITGIDKEIVGNVAAKIRAVRPPEPYKGKGIRYKGEVVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_ANASP (50S ribosomal protein L6 OS=Anabaena sp. (strain PCC 7120) GN=rplF PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.541e-47
Identity = 92/170 (54.12%), Postives = 123/170 (72.35%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI VP+ V +T+ G  + VKGP GELS   P  V V +E   L+V +  ETR + Q+HGL RTL  NMV GVS+GF+++L++ GVGYRA ++G+ LVL++G+SH V++  PDGI+  VE NT + VSGYDK  +G  AA +R  RPPEPYKGKG++Y  EV+RR
Sbjct:    2 SRIGKRPITVPAKVQVTIDGTKVVVKGPKGELSRELPANVSVSQEGETLQVTRRDETRTSRQLHGLSRTLVANMVEGVSQGFQRRLEIQGVGYRAQVQGRNLVLNMGYSHQVQIEPPDGIQFVVENNTNVIVSGYDKEIVGNTAAKVRAVRPPEPYKGKGIRYAGEVVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_ANAVT (50S ribosomal protein L6 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rplF PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.013e-47
Identity = 92/170 (54.12%), Postives = 123/170 (72.35%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI VP+ V +T+ G  + VKGP GELS   P  V V +E   L+V +  ETR + Q+HGL RTL  NMV GVS+GF+++L++ GVGYRA ++G+ L+L++G+SH V++  PDGI+  VE NT + VSGYDK  +G  AA IR  RPPEPYKGKG++Y  EV+RR
Sbjct:    2 SRIGKRPITVPAKVQVTIDGTKVVVKGPKGELSRELPVNVSVSQEGETLQVTRRDETRTSRQLHGLSRTLVANMVEGVSQGFQRRLEIQGVGYRAQVQGRNLILNMGYSHQVQIEPPDGIQFAVENNTNVIVSGYDKEIVGNTAAKIRAVRPPEPYKGKGIRYAGEVVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_NITWN (50S ribosomal protein L6 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rplF PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.648e-47
Identity = 92/170 (54.12%), Postives = 121/170 (71.18%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+P+ VPS VT T+ GQ +K+KGP GEL  V   +V+V  ED  ++V    ET+RA  ++G  R    N+V GV+KGFEKKL+++GVGYRAAL+G+ L L+LG+SH V   +P+GI + V + T IT++G D   +GQ AA IR +RPPEPYKGKGVKY DE I R
Sbjct:    2 SRIGKRPVTVPSGVTATVEGQTVKMKGPKGELRFVVHDDVEVKLEDGAVKVAPRYETKRAQALYGTARAQVANLVAGVTKGFEKKLEIIGVGYRAALQGKSLQLALGYSHDVNYAVPEGITIAVPKPTEITITGNDAQRVGQVAAEIRGYRPPEPYKGKGVKYADETIFR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_THEEB (50S ribosomal protein L6 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplF PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.988e-47
Identity = 94/178 (52.81%), Postives = 126/178 (70.79%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEEN--------TRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI +P NVT+TL GQ + VKGP G+LS V+P EV V +E   + V++  ++R A + HGL RTL  NMV GVS+GF KKL++ GVGYRA L+G+ LVLS+G+SHPV +  P+GI + +E+N        T + VSG DK  +G  +A IR  RPPEPYKGKG++Y+ E +RR
Sbjct:    2 SRIGKRPIPLPKNVTLTLDGQQVTVKGPKGQLSRVFPPEVNVVQEGEAIVVKRRDDSRPAKERHGLCRTLLANMVEGVSQGFTKKLEIQGVGYRAQLQGKTLVLSMGYSHPVEIVPPEGITLEIEDNQGKKVQQGTIVLVSGIDKELVGNTSARIRAVRPPEPYKGKGIRYMGEFVRR 179          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_ACAM1 (50S ribosomal protein L6 OS=Acaryochloris marina (strain MBIC 11017) GN=rplF PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.988e-47
Identity = 92/170 (54.12%), Postives = 122/170 (71.76%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK PI +P  V +T+ GQ + VKGP GELS     EV +++ D+ + V +  E+R A Q HGL RTL  NMV GVSKGFEKKLQ+ GVGYRA ++G+ L+L++G+S+PV +  P+G++V VE NT + VSG +K  +G  AA IR  RPPEPYKGKG++Y DE +RR
Sbjct:    2 SRIGKVPIPIPDKVNVTIKGQAVTVKGPKGELSREITPEVAIEQADNLVTVTRRNESRIARQRHGLSRTLIANMVEGVSKGFEKKLQIQGVGYRAQVQGRNLILNVGYSNPVTIEPPEGVQVAVESNTNVIVSGINKEVVGNTAARIRAVRPPEPYKGKGIRYADEYVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_SYNJA (50S ribosomal protein L6 OS=Synechococcus sp. (strain JA-3-3Ab) GN=rplF PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.225e-46
Identity = 91/170 (53.53%), Postives = 121/170 (71.18%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIRR 527
            SRIGK+PI +P+ V + + GQ + VKGP GELS   P  + V +E   L+V +  E+R A Q+HGL RTL  NMV GVS+GFE++L++VGVGYRA+ +G  L+L++G+SHPV +  P GI++ VE N  I VSG DK  +G  AA IR  RPPEPYKGKG++YV E +RR
Sbjct:    2 SRIGKRPIALPAKVEVQIEGQQISVKGPKGELSRSLPPLIAVHQEAQTLKVSRVNESRPARQLHGLCRTLVANMVDGVSRGFERRLELVGVGYRASTQGNKLILNVGYSHPVEIPFPPGIQIAVEGNNVIVVSGIDKELVGNTAARIRAVRPPEPYKGKGIRYVGEQVRR 171          
BLAST of EY711077 vs. ExPASy Swiss-Prot
Match: RL6_TRIEI (50S ribosomal protein L6 OS=Trichodesmium erythraeum (strain IMS101) GN=rplF PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.795e-46
Identity = 92/169 (54.44%), Postives = 121/169 (71.60%), Query Frame = 3
Query:   18 SRIGKQPIEVPSNVTITLGGQDLKVKGPLGELSLVYPREVKVDREDSFLRVRKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLQMVGVGYRAALEGQVLVLSLGFSHPVRMTIPDGIKVNVEENTRITVSGYDKSAIGQFAASIRKWRPPEPYKGKGVKYVDEVIR 524
            SRIGK PI +P  VTIT+ GQ + VKGPLGELS V P E+ V  +++ + V+   ++RRA Q +GL RTL  NMV GVSKG+EK+L + GVGYRA ++G+ LVL++G+S PV M  P+GI + VE NT + V+G +K  +G  AA IR  RPPE YKGKGV+Y  EVI+
Sbjct:    2 SRIGKLPIPIPKKVTITIEGQKVTVKGPLGELSRVLPPEIAVKEQENTIIVKPQEQSRRARQRYGLCRTLVANMVEGVSKGYEKRLVIQGVGYRAQVQGKTLVLNVGYSKPVEMPAPEGINIAVENNTNVIVNGINKELVGNTAAKIRAVRPPEVYKGKGVRYAGEVIK 170          
The following BLAST results are available for this feature:
BLAST of EY711077 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK6_ARATH1.866e-7782.0850S ribosomal protein L6, chloroplastic OS=Arabido... [more]
RL6_CYAA53.105e-4854.7150S ribosomal protein L6 OS=Cyanothece sp. (strain... [more]
RL6_CYAP71.180e-4754.7150S ribosomal protein L6 OS=Cyanothece sp. (strain... [more]
RL6_ANASP1.541e-4754.1250S ribosomal protein L6 OS=Anabaena sp. (strain P... [more]
RL6_ANAVT2.013e-4754.1250S ribosomal protein L6 OS=Anabaena variabilis (s... [more]
RL6_NITWN7.648e-4754.1250S ribosomal protein L6 OS=Nitrobacter winogradsk... [more]
RL6_THEEB9.988e-4752.8150S ribosomal protein L6 OS=Thermosynechococcus el... [more]
RL6_ACAM19.988e-4754.1250S ribosomal protein L6 OS=Acaryochloris marina (... [more]
RL6_SYNJA2.225e-4653.5350S ribosomal protein L6 OS=Synechococcus sp. (str... [more]
RL6_TRIEI3.795e-4654.4450S ribosomal protein L6 OS=Trichodesmium erythrae... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-E06-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711077 ID=EY711077; Name=EY711077; organism=Citrus sinensis; type=EST; length=723bp
CCACGCGTCCGAAGGAATCAAGAATAGGAAAACAGCCTATAGAAGTGCCA
TCCAATGTGACAATCACATTAGGAGGTCAAGATCTAAAAGTAAAGGGTCC
ACTGGGAGAACTTTCACTTGTTTATCCACGAGAAGTGAAGGTTGATAGGG
AGGACTCATTCCTGAGGGTCAGAAAGACTGTAGAGACAAGAAGGGCCAAT
CAAATGCACGGGCTTTTCAGGACACTGACTGACAACATGGTGGTTGGAGT
ATCGAAAGGGTTTGAGAAGAAGCTTCAAATGGTTGGTGTTGGATATCGTG
CTGCATTAGAAGGACAAGTCTTGGTATTGAGTCTTGGGTTCTCGCATCCA
GTTAGGATGACAATCCCAGATGGCATAAAAGTGAATGTGGAGGAAAACAC
CAGGATCACTGTTAGTGGATACGATAAAAGCGCAATTGGTCAGTTTGCTG
CTTCCATCAGGAAATGGAGACCCCCAGAACCGTACAAGGGAAAAGGAGTG
AAATATGTTGATGAAGTTATCAGAAGGAAGGAGGGAAAAGCAGGGAAGAA
GAAGTAATAGATCTTCGATTGTTTTTTCCATTGTCTCATTTTTTTTTTTT
TTTGTTATAAATATGCGTTGTTGAATGTACTTAATGCAATTAAAGCAATG
CCTTGCAATCTATGAGTAGTTGATTATTTCACTCNNNNNANNGNNGANGG
GNCAATTTTGATTTACCTGAAAA
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