EY711073

Overview
NameEY711073
Unique NameEY711073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length926
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711073 vs. ExPASy Swiss-Prot
Match: SEH1_OSMMO (Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.489e-14
Identity = 51/185 (27.57%), Postives = 83/185 (44.86%), Query Frame = 1
Query:  121 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSFELVAAYSDGHVKVYELLDPLILKNWQLQGGFPNAIDSVTMLRRLMPIGSISWNPQRVKTRDLVLFSGSIQTPT 660
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++   Q     W    +   + T V DV+F        L    +DG V++YE  D + L  W LQ            +   +    ISWNP   +    ++  GS  + T
Sbjct:   19 SYDFHGRRMATCSSDQSVKVWDKSDNGEWNCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGLSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQ----------HEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSNT 191          
BLAST of EY711073 vs. ExPASy Swiss-Prot
Match: SEH1_XENTR (Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.179e-13
Identity = 50/186 (26.88%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  121 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSFELVAAYSDGHVKVYELLDPLILKNWQLQGGFPNAIDSVTMLRRLMPIGSISWNPQRVKTRDLVLFSGSIQTPTN 663
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F        L    +DG V++YE  D + L  W LQ            +   +    ISWNP   +    ++  GS  +  N
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSENGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQ----------HEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSPN 192          
BLAST of EY711073 vs. ExPASy Swiss-Prot
Match: SEH1_PONAB (Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.179e-13
Identity = 50/186 (26.88%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  121 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSFELVAAYSDGHVKVYELLDPLILKNWQLQGGFPNAIDSVTMLRRLMPIGSISWNPQRVKTRDLVLFSGSIQTPTN 663
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F        L    +DG V++YE  D + L  W LQ            +   +    ISWNP   +    ++  GS  +  N
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQ----------HEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSPN 192          
BLAST of EY711073 vs. ExPASy Swiss-Prot
Match: SEH1_HUMAN (Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 2.179e-13
Identity = 50/186 (26.88%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  121 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSFELVAAYSDGHVKVYELLDPLILKNWQLQGGFPNAIDSVTMLRRLMPIGSISWNPQRVKTRDLVLFSGSIQTPTN 663
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F        L    +DG V++YE  D + L  W LQ            +   +    ISWNP   +    ++  GS  +  N
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQ----------HEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSPN 192          
BLAST of EY711073 vs. ExPASy Swiss-Prot
Match: SEH1B_XENLA (Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.179e-13
Identity = 50/186 (26.88%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  121 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSFELVAAYSDGHVKVYELLDPLILKNWQLQGGFPNAIDSVTMLRRLMPIGSISWNPQRVKTRDLVLFSGSIQTPTN 663
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F        L    +DG V++YE  D + L  W LQ            +   +    ISWNP   +    ++  GS  +  N
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSENVNWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQ----------HEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSPN 192          
BLAST of EY711073 vs. ExPASy Swiss-Prot
Match: SEH1A_XENLA (Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.179e-13
Identity = 50/186 (26.88%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  121 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSFELVAAYSDGHVKVYELLDPLILKNWQLQGGFPNAIDSVTMLRRLMPIGSISWNPQRVKTRDLVLFSGSIQTPTN 663
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F        L    +DG V++YE  D + L  W LQ            +   +    ISWNP   +    ++  GS  +  N
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSENGNWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGVVRIYEAPDVMNLSQWSLQ----------HEISCKLSCSCISWNPSSSRAHSPMIAVGSDDSSPN 192          
BLAST of EY711073 vs. ExPASy Swiss-Prot
Match: SEH1_DANRE (Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 3.717e-13
Identity = 48/166 (28.92%), Postives = 76/166 (45.78%), Query Frame = 1
Query:  121 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQPLQ-----WKLCKSFESTSTQVLDVQFGVSSTSFELVAAYSDGHVKVYELLDPLILKNWQLQGGFPNAIDSVTMLRRLMPIGSISWNP 603
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++   Q     W    +   + T V DV+F        L    +DG V++YE  D + L  W LQ            +   +    ISWNP
Sbjct:   19 SYDFHGRRMATCSSDQSVKVWDKGDDGEWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKQRGQSHWIKRTTLVDSRTSVTDVKFAPKHMGLMLTTCSADGVVRIYEAPDVMNLSQWSLQ----------HEISCKLACSCISWNP 172          
BLAST of EY711073 vs. ExPASy Swiss-Prot
Match: SEH1_BOVIN (Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.717e-13
Identity = 50/186 (26.88%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  121 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSFELVAAYSDGHVKVYELLDPLILKNWQLQGGFPNAIDSVTMLRRLMPIGSISWNPQRVKTRDLVLFSGSIQTPTN 663
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F        L    +DG V++YE  D + L  W LQ            +   +    ISWNP   +    ++  GS  +  N
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGEWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRIYEAPDVMNLSQWSLQ----------HEISCKLSCSCISWNPSSSRAHAPMIAVGSDDSSPN 192          
BLAST of EY711073 vs. ExPASy Swiss-Prot
Match: SEH1_MOUSE (Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.854e-13
Identity = 51/186 (27.42%), Postives = 82/186 (44.09%), Query Frame = 1
Query:  121 SWNYCGQRLATGSTDGTLSIXXXXXXXXXXXTCNLKTKVHAGAILKVVWVPPEFGDAVACICSDGSLLLWEEIVEDAQ-----PLQWKLCKSFESTSTQVLDVQFGVSSTSFELVAAYSDGHVKVYELLDPLILKNWQLQGGFPNAIDSVTMLRRLMPIGSISWNPQRVKTRDLVLFSGSIQTPTN 663
            S+++ G+R+AT S+D ++ +           T + KT  H+G++ +V W  PEFG  +A    D +  +WEEIV ++         W    +   + T V DV+F        L    +DG V+VYE  D + L  W LQ            +   +    ISWNP   +    ++  GS  +  N
Sbjct:   19 SFDFHGRRMATCSSDQSVKVWDKSESGDWHCTASWKT--HSGSVWRVTWAHPEFGQVLASCSFDRTAAVWEEIVGESNDKLRGQSHWVKRTTLVDSRTSVTDVKFAPKHMGLMLATCSADGIVRVYEAPDVMNLSQWSLQ----------HEVSCKLCCSCISWNPSSSRAHPPMIAVGSDDSSPN 192          
The following BLAST results are available for this feature:
BLAST of EY711073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SEH1_OSMMO7.489e-1427.57Nucleoporin seh1 OS=Osmerus mordax GN=seh1l PE=2 S... [more]
SEH1_XENTR2.179e-1326.88Nucleoporin seh1 OS=Xenopus tropicalis GN=seh1l PE... [more]
SEH1_PONAB2.179e-1326.88Nucleoporin SEH1 OS=Pongo abelii GN=SEH1L PE=2 SV=... [more]
SEH1_HUMAN2.179e-1326.88Nucleoporin SEH1 OS=Homo sapiens GN=SEH1L PE=1 SV=... [more]
SEH1B_XENLA2.179e-1326.88Nucleoporin seh1-B OS=Xenopus laevis GN=seh1l-B PE... [more]
SEH1A_XENLA2.179e-1326.88Nucleoporin seh1-A OS=Xenopus laevis GN=seh1l-A PE... [more]
SEH1_DANRE3.717e-1328.92Nucleoporin seh1 OS=Danio rerio GN=seh1l PE=2 SV=2[more]
SEH1_BOVIN3.717e-1326.88Nucleoporin SEH1 OS=Bos taurus GN=SEH1L PE=2 SV=1[more]
SEH1_MOUSE4.854e-1327.42Nucleoporin SEH1 OS=Mus musculus GN=Seh1l PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-E02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711073 ID=EY711073; Name=EY711073; organism=Citrus sinensis; type=EST; length=926bp
TCCGACCCACGCGTCCGTCACTGCGAGCGTGCGGTCTCCTCTCATCTGTG
CTGTTGAAATTCACGGTTCACGGACATGGACAAAGCAGTTGCGACTCTTG
ACAAAGGCACAACGAGCTCCTCGTGGAACTACTGTGGCCAGAGATTAGCC
ACTGGTTCAACCGACGGCACTCTCTCCATCTTTGACTCACCTGACCCCTC
TTCTTCCTCATTCACCTGCAACCTCAAAACTAAGGTACATGCGGGTGCCA
TTTTAAAGGTTGTTTGGGTGCCACCGGAGTTCGGTGACGCGGTTGCCTGT
ATTTGCTCGGATGGAAGTTTGTTGTTGTGGGAAGAGATTGTTGAAGATGC
ACAGCCTCTGCAGTGGAAGCTCTGTAAGAGCTTTGAAAGCACTTCGACTC
AAGTGTTAGATGTTCAATTTGGAGTCTCTTCCACAAGTTTTGAATTGGTT
GCTGCATACTCAGATGGCCATGTTAAAGTTTATGAGCTCCTAGATCCCTT
GATACTGAAAAATTGGCAACTTCAGGGTGGATTTCCGAATGCTATTGATT
CTGTGACTATGTTAAGAAGGCTCATGCCTATCGGCTCCATTTCTTGGAAT
CCACAAAGGGTGAAAACCAGGGATCTAGTTTTGTTCTCGGGTTCAATTCA
AACCCCCACCAACTAATTCCCCCCAGGGGTGCTAAATTTTGAATGGCTGG
CTGCTAAATTCCCCCTTATGGGAAAAGGGCAGGGTGGGGAAAACAAAAAA
TCCCCCTGGAAGTATTATTTTCTATGTATTAAGGGCGGGGTTTCTTTTCC
GGAAAGCCTCTGGATTTGGGGTGTTAATATGGAGAAAGTTAGCGGGGGAT
GGCGGGCAATTTTCTATTTATCTATACGTTGTTTTAGATACCCATCTGGA
GAGCTCGTATTTTGGCCGCGCTACCT
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