EY711063

Overview
NameEY711063
Unique NameEY711063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length865
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY711063_ssr174 microsatellite EY711063_ssr174:174..185. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: TRXX_ARATH (Thioredoxin-X, chloroplastic OS=Arabidopsis thaliana GN=ATHX PE=2 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 4.047e-43
Identity = 102/192 (53.12%), Postives = 127/192 (66.15%), Query Frame = 3
Query:   63 MDIVFSNSTLLFRQQPLVAPVRTVT-GTHRQQNIIXXXXXXXXXXKNQLLFGSRTNLSLKSYNNSLPKLAIRVRCGASSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLLESISVA 635
            MD + S+ST+L R   L  PVR+ +  T      +             LL  S      +  ++S+      +RCG   GI EI ESEF +TVL+S +PVLVEFVA WCGPC+L+ PA+E L+QEYGD+LT+VKIDHDANP+LI E+KVYGLP  IL ++G+EVP S REGAITK KLKEYID LL SISVA
Sbjct:    1 MDSIVSSSTILMRSY-LTPPVRSCSPATSVSVKPLSSVQVTSVAANRHLLSLSSGARRTRKSSSSV------IRCG---GIKEIGESEFSSTVLESAQPVLVEFVATWCGPCKLIYPAMEALSQEYGDKLTIVKIDHDANPKLIAEFKVYGLPHFILFKDGKEVPGSRREGAITKAKLKEYIDGLLNSISVA 182          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO2_ANASP (Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN=trxB PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 1.146e-21
Identity = 52/111 (46.85%), Postives = 78/111 (70.27%), Query Frame = 3
Query:  291 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLLES 623
            S G+  IT++EF + VLK+E+PVLV F A+WCGPC+L++P +   A  Y DRL VVK++ D NP  +++YKV G+P L L + G+++ +S  EG I+K KL  ++DT L +
Sbjct:    2 SKGVITITDAEFESEVLKAEQPVLVYFWASWCGPCQLMSPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEGVPALRLVK-GEQILDS-TEGVISKDKLLSFLDTHLNN 110          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_THIFE (Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.287e-20
Identity = 46/109 (42.20%), Postives = 71/109 (65.14%), Query Frame = 3
Query:  291 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLL 617
            S  I  +++  F   VLKS +PVLV+F A WCGPC+++AP +E +A EY DRL V K + D NP    +Y + G+PTL+L + G+   E+ + GA++K +L  ++D+ L
Sbjct:    2 SDAILYVSDDSFETDVLKSSKPVLVDFWAEWCGPCKMIAPILEEIADEYADRLRVAKFNIDENPNTPPQYAIRGIPTLLLFKAGK--LEATKVGALSKAQLTAFLDSQL 108          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO2_SYNY3 (Thioredoxin-like protein slr1139 OS=Synechocystis sp. (strain PCC 6803) GN=slr1139 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.120e-19
Identity = 49/109 (44.95%), Postives = 71/109 (65.14%), Query Frame = 3
Query:  300 ITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLLESI 626
            + EIT++EF        +PVLV F A+WCGPCRL+APA++ +A++YGD+L V+K++ D NP  + + KV G+P L L +N + V     EGAI K KL E +   L+ I
Sbjct:    3 LLEITDAEFEQETQGQTKPVLVYFWASWCGPCRLMAPAIQAIAKDYGDKLKVLKLEVDPNPAAVAQCKVEGVPALRLFKNNELV--MTHEGAIAKPKLLELLKEELDFI 109          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_SHIFL (Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.323e-19
Identity = 44/109 (40.37%), Postives = 72/109 (66.06%), Query Frame = 3
Query:  291 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLL 617
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+L +NG+    + + GA++K +LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_SALTY (Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.323e-19
Identity = 44/109 (40.37%), Postives = 72/109 (66.06%), Query Frame = 3
Query:  291 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLL 617
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+L +NG+    + + GA++K +LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_SALTI (Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.323e-19
Identity = 44/109 (40.37%), Postives = 72/109 (66.06%), Query Frame = 3
Query:  291 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLL 617
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+L +NG+    + + GA++K +LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_ECOLI (Thioredoxin-1 OS=Escherichia coli (strain K12) GN=trxA PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.323e-19
Identity = 44/109 (40.37%), Postives = 72/109 (66.06%), Query Frame = 3
Query:  291 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLL 617
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+L +NG+    + + GA++K +LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_ECOL6 (Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.323e-19
Identity = 44/109 (40.37%), Postives = 72/109 (66.06%), Query Frame = 3
Query:  291 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLL 617
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+L +NG+    + + GA++K +LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
BLAST of EY711063 vs. ExPASy Swiss-Prot
Match: THIO_ECO57 (Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 5.323e-19
Identity = 44/109 (40.37%), Postives = 72/109 (66.06%), Query Frame = 3
Query:  291 SSGITEITESEFPNTVLKSERPVLVEFVANWCGPCRLVAPAVEWLAQEYGDRLTVVKIDHDANPQLIEEYKVYGLPTLILXQNGQEVPESXREGAITKLKLKEYIDTLL 617
            S  I  +T+  F   VLK++  +LV+F A WCGPC+++AP ++ +A EY  +LTV K++ D NP    +Y + G+PTL+L +NG+    + + GA++K +LKE++D  L
Sbjct:    2 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVA--ATKVGALSKGQLKEFLDANL 108          
The following BLAST results are available for this feature:
BLAST of EY711063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
TRXX_ARATH4.047e-4353.13Thioredoxin-X, chloroplastic OS=Arabidopsis thalia... [more]
THIO2_ANASP1.146e-2146.85Thioredoxin-2 OS=Anabaena sp. (strain PCC 7120) GN... [more]
THIO_THIFE6.287e-2042.20Thioredoxin OS=Thiobacillus ferrooxidans GN=trxA P... [more]
THIO2_SYNY33.120e-1944.95Thioredoxin-like protein slr1139 OS=Synechocystis ... [more]
THIO_SHIFL5.323e-1940.37Thioredoxin-1 OS=Shigella flexneri GN=trxA PE=3 SV... [more]
THIO_SALTY5.323e-1940.37Thioredoxin-1 OS=Salmonella typhimurium GN=trxA PE... [more]
THIO_SALTI5.323e-1940.37Thioredoxin-1 OS=Salmonella typhi GN=trxA PE=3 SV=... [more]
THIO_ECOLI5.323e-1940.37Thioredoxin-1 OS=Escherichia coli (strain K12) GN=... [more]
THIO_ECOL65.323e-1940.37Thioredoxin-1 OS=Escherichia coli O6 GN=trxA PE=3 ... [more]
THIO_ECO575.323e-1940.37Thioredoxin-1 OS=Escherichia coli O157:H7 GN=trxA ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-D02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711063 ID=EY711063; Name=EY711063; organism=Citrus sinensis; type=EST; length=865bp
CCACGCGTCCGACAATTCAAAAAGAAAAGAAAATGCTCTAAAAATCTTTA
ATCACTTGCAAAATGGATATCGTCTTCTCCAACTCCACTTTATTGTTCAG
ACAACAACCACTGGTTGCTCCTGTTCGTACAGTTACTGGGACCCACAGGC
AACAGAACATCATCACCAGCGCTACAACAACAACAACGTCGTCAAAGAAT
CAGCTATTGTTCGGGTCTCGAACGAACCTCTCACTAAAGTCTTATAATAA
TTCGCTTCCCAAGTTGGCAATACGCGTACGCTGCGGTGCTAGCAGTGGCA
TAACGGAGATTACCGAAAGTGAGTTCCCAAACACGGTCTTGAAATCTGAG
CGTCCGGTTCTTGTCGAGTTCGTGGCCAATTGGTGCGGTCCTTGCCGCTT
GGTTGCTCCCGCCGTCGAATGGCTCGCCCAGGAATACGGAGACAGATTGA
CTGTCGTAAAGATTGATCATGACGCAAACCCACAACTAATAGAGGAATAC
AAAGTTTATGGATTGCCGACCTTGATTCTCTTNCAGAATGGACAGGAAGT
TCCGGAAAGCANGAGGGAAGGTGCAATTACTAAGTTGAAGCTTAAAGAGT
ATATTGATACTCTTTTAGAATCAATCTCAGTGGCTTTAGCCCTCTTTTGA
CATGCTCAGCAAATTATGCTCGTTCTTTCACAGATTTTGACATCATTGGC
AAAGACGAATATGGGTAAATATTTACTTTTTCCNTATGNAAATCTGNNNA
TCATCGTACAGNATCCGTGGATGNNATCAATGNATAAATTTGATCTATGT
ACCAAGATATCATACCTAATTTCTGATATCCAACGGGCACATTGGNTTTT
CAAAAAAAAAAAAAA
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