EY711062

Overview
NameEY711062
Unique NameEY711062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length891
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: CRY1_ARATH (Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=1 SV=1)

HSP 1 Score: 344.354 bits (882), Expect = 1.895e-118
Identity = 158/169 (93.49%), Postives = 164/169 (97.04%), Query Frame = 2
Query:   38 FLSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRID 544
            FLSPHLHFGEVSVRKVFHLVRIKQV+WANEGN+AG+ESVNLFLKSIGLREYSRY+SFNHPYSHERPLLGHLKFF W VDE YFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYI+GT+PD R FDRID
Sbjct:  249 FLSPHLHFGEVSVRKVFHLVRIKQVAWANEGNEAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWAVDENYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDSREFDRID 417          

HSP 2 Score: 70.4774 bits (171), Expect = 1.895e-118
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 1
Query:  544 HPQFEGYKFDPNGEYVRRWLPELARLPTEWIPTHGNA 654
            +PQFEGYKFDPNGEYVRRWLPEL+RLPT+WI    NA
Sbjct:  418 NPQFEGYKFDPNGEYVRRWLPELSRLPTDWIHHPWNA 454          

HSP 3 Score: 55.4546 bits (132), Expect = 1.895e-118
Identity = 33/84 (39.29%), Postives = 45/84 (53.57%), Query Frame = 3
Query:  639 HPWKCPKSGLQAAGMELGSHYPFPLKRIGAPKCGVDQTLSKCGHKETPSKPSF*KELRKGLGNSL*FTPNCP--FPRKIKGGET 884
            HPW  P+S LQAAG+ELGS+YP P+  +   K  + + LS+    E  S+ +      +GLG+S       P  FPR I   ET
Sbjct:  450 HPWNAPESVLQAAGIELGSNYPLPIVGLDEAKARLHEALSQMWQLEAASRAAIENGSEEGLGDSA-EVEEAPIEFPRDITMEET 532          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: CRY1_SINAL (Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 3.675e-73
Identity = 117/179 (65.36%), Postives = 143/179 (79.89%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDIHSLRVTSLTP 577
            LSP+LHFGE+SVR+VF   R+KQ+ WA + N  G+ES +LFL+ IGLR+YSR + FN P++HE+ LL HL+FF W  D   FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VK L LPW+WGMKYFWDTLLDADLE D +GWQYISG++PDG   DR+D  +++     P
Sbjct:  246 LSPYLHFGEISVRRVFQCARMKQIIWARDKNGEGEESADLFLRGIGLRDYSRIICFNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDIIGWQYISGSLPDGHELDRLDNPAIQGAKYDP 424          

HSP 2 Score: 33.113 bits (74), Expect = 3.675e-73
Identity = 12/25 (48.00%), Postives = 19/25 (76.00%), Query Frame = 3
Query:  639 HPWKCPKSGLQAAGMELGSHYPFPL 713
            HPW  P + L+A+G+ELG++Y  P+
Sbjct:  446 HPWDAPLTVLKASGVELGTNYAKPI 470          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: CRY2_ARATH (Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=1 SV=2)

HSP 1 Score: 270.396 bits (690), Expect = 9.730e-72
Identity = 122/179 (68.16%), Postives = 143/179 (79.89%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDIHSLRVTSLTP 577
            LSP+LHFGE+SVR VF   R+KQ+ WA + N  G+ES +LFL+ IGLREYSRY+ FN P++HE+ LL HL+FF W  D   FKAWRQGRTGYPLVDAGMRELWATGW+H+RIRV+VSSF VK L LPW+WGMKYFWDTLLDADLE D LGWQYISG+IPDG   DR+D  +L+     P
Sbjct:  247 LSPYLHFGEISVRHVFQCARMKQIIWARDKNSEGEESADLFLRGIGLREYSRYICFNFPFTHEQSLLSHLRFFPWDADVDKFKAWRQGRTGYPLVDAGMRELWATGWMHNRIRVIVSSFAVKFLLLPWKWGMKYFWDTLLDADLECDILGWQYISGSIPDGHELDRLDNPALQGAKYDP 425          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: PHR_SYNY3 (Deoxyribodipyrimidine photo-lyase OS=Synechocystis sp. (strain PCC 6803) GN=phrA PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.394e-30
Identity = 55/171 (32.16%), Postives = 95/171 (55.56%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRIDIHS 553
            LS  L FG +S R ++        +W    ++    S+  + + +  RE+ ++  ++ P   + P     + F W  ++ +F+AW +GRTGYP++DA M +L  TGW+H+R R++V+SF +K L L W+WG  YF  TL D DL ++  GWQ+ + +  D +     + H+
Sbjct:  257 LSAALKFGVISPRTLWQTTL---EAWEQSRSEEARASIETWQQELAWREFYQHCLYSFPALAQGPYRSPFQEFPWEENQDHFQAWCEGRTGYPIIDAAMAQLNQTGWMHNRCRMIVASFLIKDLILNWQWGELYFMQTLYDGDLAANNGGWQWSASSGMDPKPLRIFNPHT 424          

HSP 2 Score: 41.9726 bits (97), Expect = 1.394e-30
Identity = 16/28 (57.14%), Postives = 20/28 (71.43%), Query Frame = 1
Query:  544 HPQFEGYKFDPNGEYVRRWLPELARLPT 627
            +P  +  KFDP GEY+R WLP+LAR  T
Sbjct:  421 NPHTQAQKFDPEGEYIRTWLPQLARFDT 448          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: PHR_VIBCH (Deoxyribodipyrimidine photo-lyase OS=Vibrio cholerae GN=phrA PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.312e-29
Identity = 60/168 (35.71%), Postives = 94/168 (55.95%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 541
            LSP+L  G +S R+   + R+   S   E +    E   ++L  +  RE+ +++    P  S  R  +       W  D   F+ W +G+TGYP+VDA MR+L  TGW+H+R+R++V+SF  K L + WRWG +YF   L+D D  ++  GWQ+ + T  DG+ + RI
Sbjct:  239 LSPYLAIGVLSARQC--VARLYHESSMGELS----EGAQVWLSELIWREFYQHLVAIEPNLSKSRDFVEWGARLEWWNDNEKFQLWCEGKTGYPIVDAAMRQLNQTGWMHNRLRMIVASFLTKDLHIDWRWGERYFMSRLIDGDYAANNGGWQWCASTGCDGQPYFRI 400          

HSP 2 Score: 41.5874 bits (96), Expect = 3.312e-29
Identity = 15/31 (48.39%), Postives = 24/31 (77.42%), Query Frame = 1
Query:  544 HPQFEGYKFDPNGEYVRRWLPELARLPTEWI 636
            +P  +G KFDPNG+++RRW+PEL  + + +I
Sbjct:  402 NPVSQGEKFDPNGDFIRRWVPELRSVSSAYI 432          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: PHR_ECOLI (Deoxyribodipyrimidine photo-lyase OS=Escherichia coli (strain K12) GN=phrB PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.613e-28
Identity = 60/168 (35.71%), Postives = 96/168 (57.14%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 541
            LS  L  G +S R+  H +  +Q    + G  AG    +++L  +  RE+ R++   HP     RP +       W  +  + +AW++G+TGYP+VDA MR+L +TGW+H+R+R++ +SF VK L + WR G +YF   L+D DL ++  GWQ+ + T  D   + RI
Sbjct:  238 LSASLATGGLSPRQCLHRLLAEQPQALDGG--AG----SVWLNELIWREFYRHLITYHPSLCKHRPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQLNSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRI 399          

HSP 2 Score: 37.3502 bits (85), Expect = 1.613e-28
Identity = 14/27 (51.85%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  544 HPQFEGYKFDPNGEYVRRWLPELARLP 624
            +P  +G KFD  GE++R+WLPEL  +P
Sbjct:  401 NPTTQGEKFDHEGEFIRQWLPELRDVP 427          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: PHR_STRGR (Deoxyribodipyrimidine photo-lyase OS=Streptomyces griseus GN=phr PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.735e-28
Identity = 61/165 (36.97%), Postives = 90/165 (54.55%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP---YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGR 526
            LSPHLHFG VS  ++ H  R K       G   G+     F++ +  R++   +  + P   +S  RP     +   W  D     AW+ G TGYPLVDA MR+L   GW+H+R R++ +SF  K L + WR G ++F D L+D D+ ++ L WQ+++GT  D R
Sbjct:  234 LSPHLHFGTVSAAELVHRAREK-------GGLGGEA----FVRQLAWRDFHHQVLADRPDASWSDYRP-----RHDRWRSDADEMHAWKSGLTGYPLVDAAMRQLAHEGWMHNRARMLAASFLTKTLYVDWREGARHFLDLLVDGDVANNQLNWQWVAGTGTDTR 382          

HSP 2 Score: 35.4242 bits (80), Expect = 2.735e-28
Identity = 13/26 (50.00%), Postives = 19/26 (73.08%), Query Frame = 1
Query:  544 HPQFEGYKFDPNGEYVRRWLPELARL 621
            +P  +G +FD  G+YVR W+PELA +
Sbjct:  388 NPVIQGKRFDARGDYVRGWVPELAEV 413          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: PHR_SALTY (Deoxyribodipyrimidine photo-lyase OS=Salmonella typhimurium GN=phrB PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 7.852e-28
Identity = 60/168 (35.71%), Postives = 96/168 (57.14%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHP-YSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 541
            LS  L  G +S R+  H +  +Q    + G  +      ++L  +  RE+ R++   +P     +P +   K  +W  +  YF+AW++G TGYP+VDA MR+L ATGW+H+R+R++ +SF VK L + WR G +YF   L+D DL ++  GWQ+ + T  D   + RI
Sbjct:  239 LSASLATGGLSPRQCLHRLLAEQPQALDGGPGS------VWLNELIWREFYRHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQLNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGTDAAPYFRI 400          

HSP 2 Score: 34.6538 bits (78), Expect = 7.852e-28
Identity = 12/27 (44.44%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  544 HPQFEGYKFDPNGEYVRRWLPELARLP 624
            +P  +G +FD +GE++R+WLP L  +P
Sbjct:  402 NPTTQGERFDRDGEFIRQWLPALRDIP 428          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: PHR_BACPF (Deoxyribodipyrimidine photo-lyase (Fragment) OS=Bacillus pseudofirmus GN=phr PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 6.513e-27
Identity = 55/167 (32.93%), Postives = 91/167 (54.49%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPYSHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 541
            LSP++  G VS R +++ +            +A   S   FLK +  R++ R + F  P   +R ++   +  +W  D+    +W++G TG+P+VDAGMR+L   GW+H+R+R++ +SF  K L + WR G +YF   L+D D  S+  GWQ+ +    D   + RI
Sbjct:  104 LSPYIKTGAVSSRSIYYHIL---------NAEADSYSAETFLKELAWRDFYRMVHFYEPDCKDREIMEGYRELNWSHDQDDLTSWKRGETGFPIVDAGMRQLLNEGWMHNRLRMITASFLTKDLLIDWRLGERYFERMLIDYDPSSNIGGWQWAASVGTDAVPYFRI 261          

HSP 2 Score: 32.7278 bits (73), Expect = 6.513e-27
Identity = 12/31 (38.71%), Postives = 20/31 (64.52%), Query Frame = 1
Query:  544 HPQFEGYKFDPNGEYVRRWLPELARLPTEWI 636
            +P  +  +FD NG Y+R ++PEL  +P  +I
Sbjct:  263 NPVTQSKRFDENGTYIRTYIPELNHVPDHYI 293          
BLAST of EY711062 vs. ExPASy Swiss-Prot
Match: PHR_NEUCR (Deoxyribodipyrimidine photo-lyase OS=Neurospora crassa GN=phr-1 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 2.408e-26
Identity = 51/168 (30.36%), Postives = 91/168 (54.17%), Query Frame = 2
Query:   41 LSPHLHFGEVSVRKVFHLVRIKQVSWANEGNKAGDESVNLFLKSIGLREYSRYMSFNHPY-SHERPLLGHLKFFSWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTIPDGRAFDRI 541
            LS H   G +S R      R +  +    G   G+E +  ++  +  R++ +++  + PY    +P         W  +  +F AW QGRTG+P++DA MR++ +TG++H+R+R++V+SF  K L + WR G +YF + L+D D  S+  GW + +    D + + R+
Sbjct:  394 LSVHFASGTLSARTAIRTARDRNNTKKLNG---GNEGIQRWISEVAWRDFYKHVLVHWPYVCMNKPFKPTYSNIEWSYNVDHFHAWTQGRTGFPIIDAAMRQVLSTGYMHNRLRMIVASFLAKDLLVDWRMGERYFMEHLIDGDFASNNGGWGFAASVGVDPQPYFRV 558          

HSP 2 Score: 36.965 bits (84), Expect = 2.408e-26
Identity = 13/27 (48.15%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  544 HPQFEGYKFDPNGEYVRRWLPELARLP 624
            +P  +  KFDP+G+Y+R+W+ EL  LP
Sbjct:  560 NPLLQSEKFDPDGDYIRKWVEELRDLP 586          
The following BLAST results are available for this feature:
BLAST of EY711062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
CRY1_ARATH1.895e-11893.49Cryptochrome-1 OS=Arabidopsis thaliana GN=CRY1 PE=... [more]
CRY1_SINAL3.675e-7365.36Cryptochrome-1 OS=Sinapis alba GN=PHR1 PE=2 SV=1[more]
CRY2_ARATH9.730e-7268.16Cryptochrome-2 OS=Arabidopsis thaliana GN=CRY2 PE=... [more]
PHR_SYNY31.394e-3032.16Deoxyribodipyrimidine photo-lyase OS=Synechocystis... [more]
PHR_VIBCH3.312e-2935.71Deoxyribodipyrimidine photo-lyase OS=Vibrio choler... [more]
PHR_ECOLI1.613e-2835.71Deoxyribodipyrimidine photo-lyase OS=Escherichia c... [more]
PHR_STRGR2.735e-2836.97Deoxyribodipyrimidine photo-lyase OS=Streptomyces ... [more]
PHR_SALTY7.852e-2835.71Deoxyribodipyrimidine photo-lyase OS=Salmonella ty... [more]
PHR_BACPF6.513e-2732.93Deoxyribodipyrimidine photo-lyase (Fragment) OS=Ba... [more]
PHR_NEUCR2.408e-2630.36Deoxyribodipyrimidine photo-lyase OS=Neurospora cr... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-D01-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711062 ID=EY711062; Name=EY711062; organism=Citrus sinensis; type=EST; length=891bp
CCACGCGTCCGCCCACGCGTCCGGTGCTACAACCTCATTTCTCTCTCCAC
ATTTGCATTTTGGGGAGGTTAGTGTGAGGAAAGTCTTCCATCTTGTCCGC
ATCAAGCAGGTTTCATGGGCCAATGAAGGGAACAAGGCTGGTGATGAGAG
TGTGAACTTGTTTCTCAAGTCAATTGGTCTTCGGGAATATTCAAGGTACA
TGAGTTTTAACCATCCTTACAGTCATGAAAGGCCTCTTCTTGGGCACCTT
AAGTTCTTTTCTTGGGTTGTGGATGAGGGCTATTTTAAGGCATGGAGGCA
AGGTAGAACTGGTTATCCACTGGTGGATGCTGGCATGAGAGAGTTGTGGG
CCACTGGTTGGCTTCATGATCGGATACGAGTAGTAGTTTCTAGTTTCTTT
GTAAAAGTTCTACAGCTTCCATGGAGATGGGGGATGAAATATTTTTGGGA
TACCCTCTTGGATGCAGATTTAGAAAGTGATGCTCTTGGTTGGCAGTACA
TATCCGGTACTATCCCTGATGGCCGTGCTTTTGACCGAATTGACATCCAC
AGTTTGAGGGTTACAAGTTTGACCCCAATGGAGAATATGTACGACGGTGG
CTCCCTGAACTTGCCAGACTGCCCACTGAATGGATACCCACCCATGGAAA
TGCCCAAAGTCTGGGCTCCAAGCTGCTGGAATGGAACTGGGGTCCCATTA
CCCTTTTCCCCTAAAACGGATTGGCGCCCCAAAATGCGGGGTGGACCAAA
CCCTTTCAAAATGTGGGCACAAAGAAACACCTTCCAAACCTTCATTTTAA
AAGGAACTGAGGAAAGGCCTTGGAAACTCCCTTTGATTCACCCCCAATTG
TCCTTTCCCCCGGAAAATAAAAGGGGGAGAAACCCCCAACA
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