EY711049

Overview
NameEY711049
Unique NameEY711049
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length900
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7698 contig Csv1_Contig7698:14..914. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711049 vs. ExPASy Swiss-Prot
Match: DCOR_DATST (Ornithine decarboxylase OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.161e-50
Identity = 107/222 (48.20%), Postives = 139/222 (62.61%), Query Frame = 2
Query:  107 RVTTVVTKDELTEFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLXAAEASGLSVVGVSFHVGSEXXXXXXXXXXXXXXXXXXDTAARTSNTK 772
            R    +++D L +FM S I ++ + ++ PFY++DLG VVSL +   + LP I P YAVKCN            GSNFDC SR+EIE VL LG+SPDRI++ANPCKP S I +AA VGVNLTT DS +E+ KIR  HPK +LL+RIK  DD  A+ P+  KYGA   P+E+ PLL  A+A+ L+V GVSFH+GS                   +TAAR   +K
Sbjct:   36 RKVVPLSRDALQDFMVSIITQKLQDEKQPFYVLDLGEVVSLMDQWNAGLPNIRPFYAVKCNPEPSFLSMLSAMGSNFDCASRAEIEYVLSLGISPDRIVFANPCKPESDIIFAAKVGVNLTTFDSEDEVYKIRKHHPKCELLLRIKPMDDGNARCPMGPKYGA--LPEEVEPLLRTAQAARLTVSGVSFHIGSGDADSKAYLGAIAAAKGVFETAARFGMSK 255          

HSP 2 Score: 22.3274 bits (46), Expect = 5.161e-50
Identity = 12/17 (70.59%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  769 KMRVLDIXGGF-SFHYF 816
            KM VLDI GGF S H F
Sbjct:  255 KMTVLDIGGGFTSGHQF 271          
BLAST of EY711049 vs. ExPASy Swiss-Prot
Match: DCOR_SOLLC (Ornithine decarboxylase OS=Solanum lycopersicum GN=ODC PE=2 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 9.521e-49
Identity = 103/196 (52.55%), Postives = 129/196 (65.82%), Query Frame = 2
Query:   98 GGQRVTTVVTKDELTEFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLXAAEASGLSVVGVSFHVGS 685
            G  R    ++KD L +FM S I ++ + D+ PFY++DLG VVSL     S LP I P YAVKCN            GSNFDC SR+EIE VL  G+SPDRI++ANPCKP S I +A  +GVNLTT DS +E+ KIR  HPK +LL+RIK   D  A+ P+  KYGA   P+EI PLL  A+A+ L+V GVSFH+GS
Sbjct:   33 GHTRKVVPLSKDALQDFMVSIITQKLQDDKQPFYVLDLGEVVSLMEQWNSALPNIRPFYAVKCNPEPSFLSMLSAMGSNFDCASRAEIEYVLSHGISPDRIVFANPCKPESDIIFAEKIGVNLTTYDSEDEVYKIRKHHPKCELLLRIKPMTDGNARCPMGPKYGA--LPEEIEPLLRTAQAARLTVSGVSFHIGS 226          

HSP 2 Score: 22.3274 bits (46), Expect = 9.521e-49
Identity = 12/17 (70.59%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  769 KMRVLDIXGGF-SFHYF 816
            KM VLDI GGF S H F
Sbjct:  255 KMTVLDIGGGFTSGHQF 271          
BLAST of EY711049 vs. ExPASy Swiss-Prot
Match: DCOR_CAPAN (Ornithine decarboxylase OS=Capsicum annuum GN=ODC PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.886e-47
Identity = 102/210 (48.57%), Postives = 134/210 (63.81%), Query Frame = 2
Query:   56 GTPSTLLHLDAQVMGGQRVTTVVTKDELTEFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLXAAEASGLSVVGVSFHVGS 685
            G P +     A+     R    ++KD L +FM S I ++ + ++ PFY++DLG VVSL +     LP + P YAVKCN            GSNF C SR+EIE VL LG+SP+RI++ANPCKP S I +A  VGVNLTT DS +E+ KI+  HPK +LL+RIK  +D  A+ P+  KYGA   P+EI PLL  A+AS L+V GVSFH+GS
Sbjct:   23 GAPPSTAAAAAENGDTTRKVVPLSKDALQDFMVSIITQKLQGEKKPFYVLDLGEVVSLMDQWNVALPNVRPFYAVKCNPEPSFLSMLAAMGSNFVCASRAEIEYVLSLGISPERIVFANPCKPESDIIFAEKVGVNLTTYDSEDEVYKIKKHHPKCELLLRIKPMNDGNARCPMGPKYGA--LPEEIEPLLRIAQASRLTVSGVSFHIGS 230          

HSP 2 Score: 22.7126 bits (47), Expect = 3.886e-47
Identity = 12/17 (70.59%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  769 KMRVLDIXGGF-SFHYF 816
            KM VLDI GGF S H F
Sbjct:  259 KMNVLDIGGGFTSGHQF 275          
BLAST of EY711049 vs. ExPASy Swiss-Prot
Match: DCOR_YEAST (Ornithine decarboxylase OS=Saccharomyces cerevisiae GN=SPE1 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 3.889e-37
Identity = 82/168 (48.81%), Postives = 108/168 (64.29%), Query Frame = 2
Query:  182 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLXAAEASGLSVVGVSFHVGS 685
            +E  F++ DLG V  L+N+ +  LP I P YAVKCN            G NFDC S+ EI+ VL + +SPDRI+YANPCK  S I+YAAS  V  +T D+VEEL KI+ +HP+S LL+RI + DDS A+  L +KYG     + +  LL A +  GL++ GVSFHVGS
Sbjct:   83 EENSFFICDLGEVKRLFNNWVKELPRIKPFYAVKCNPDTKVLSLLAELGVNFDCASKVEIDRVLSMNISPDRIVYANPCKVASFIRYAASKNVMKSTFDNVEELHKIKKFHPESQLLLRI-ATDDSTAQCRLSTKYGC--EMENVDVLLKAIKELGLNLAGVSFHVGS 247          

HSP 2 Score: 23.483 bits (49), Expect = 3.889e-37
Identity = 9/25 (36.00%), Postives = 15/25 (60.00%), Query Frame = 1
Query:  772 MRVLDIXGGFSFHYFNPNYFQKRLS 846
            +++LD+ GGF F  F  +    RL+
Sbjct:  278 LKILDVGGGFQFESFKESTAVLRLA 302          
BLAST of EY711049 vs. ExPASy Swiss-Prot
Match: DCOR_DICDI (Probable ornithine decarboxylase OS=Dictyostelium discoideum GN=odc PE=3 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 4.341e-35
Identity = 76/168 (45.24%), Postives = 107/168 (63.69%), Query Frame = 2
Query:  182 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLXAAEASGLSVVGVSFHVGS 685
            D   F++ D+GV++  +   + NLP + P+YAVKCN            G+N+DC SR+EIE+VL LGV P RIIYANPCK +S +K+A +  V L T D++ EL+KI  + P+++L++RI +PDDS +     SK+G   H  +   LL  A+   L VVGVSFHVGS
Sbjct:   83 DRDAFFVADVGVIIKQWQKWVKNLPNVKPYYAVKCNPTVGVLRVLDALGTNYDCASRTEIESVLNLGVDPSRIIYANPCKQISALKFARAHNVKLMTFDNLSELEKIEKFFPEAELVLRI-APDDSKSVMRFGSKFGV--HIDDCNDLLEMAKEMNLKVVGVSFHVGS 247          
BLAST of EY711049 vs. ExPASy Swiss-Prot
Match: DCOR_SCHPO (Ornithine decarboxylase OS=Schizosaccharomyces pombe GN=spe1 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.382e-33
Identity = 78/181 (43.09%), Postives = 109/181 (60.22%), Query Frame = 2
Query:  143 EFMQSTILKRQEFDEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLXAAEASGLSVVGVSFHVGS 685
            E ++   ++ +  D   F++ DL  V        + LP + P YAVKCN            G+ FDC S+ E+E +L LGVSPDRI+YANPCK +++++YAAS G+NL T D+ +EL K++  HP S LL+RI S DDS +   L  K+GA     +   LL  A++  L+VVGVSFHVGS
Sbjct:   52 EEIERAAVRGEPADSDAFFVADLNGVYRQLLRWHAKLPRVQPFYAVKCNPDPKVLALLNKFGTGFDCASKGELEQILGLGVSPDRIVYANPCKAITYVRYAASKGINLMTFDNADELYKVKQHHPNSRLLLRI-STDDSNSLCRLSLKFGAS--LDDTGKLLDIAKSLELNVVGVSFHVGS 229          
BLAST of EY711049 vs. ExPASy Swiss-Prot
Match: DCOR_HUMAN (Ornithine decarboxylase OS=Homo sapiens GN=ODC1 PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 7.663e-32
Identity = 78/168 (46.43%), Postives = 101/168 (60.12%), Query Frame = 2
Query:  182 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLXAAEASGLSVVGVSFHVGS 685
            D+  FY+ DLG ++  +   +  LP + P YAVKCN            G+ FDC S++EI+ V  LGV P+RIIYANPCK VS IKYAA+ GV + T DS  EL K+   HPK+ L++RI + DDS A   L  K+GA      +  LL  A+   + VVGVSFHVGS
Sbjct:   36 DKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQLVQSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLRI-ATDDSKAVCRLSVKFGATLRTSRL--LLERAKELNIDVVGVSFHVGS 200          
BLAST of EY711049 vs. ExPASy Swiss-Prot
Match: DCOR_RAT (Ornithine decarboxylase OS=Rattus norvegicus GN=Odc1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.001e-31
Identity = 79/168 (47.02%), Postives = 101/168 (60.12%), Query Frame = 2
Query:  182 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLXAAEASGLSVVGVSFHVGS 685
            D+  FY+ DLG V+  +   +  LP + P YAVKCN            G+ FDC S++EI+ V  LGV P+RIIYANPCK VS IKYAAS GV + T DS  EL K+   HPK+ L++RI + DDS A   L  K+GA      +  LL  A+   + V+GVSFHVGS
Sbjct:   36 DKDAFYVADLGDVLKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLVQGLGVPPERIIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLRI-ATDDSKAVCRLSVKFGATLKTSRL--LLERAKELNIDVIGVSFHVGS 200          
BLAST of EY711049 vs. ExPASy Swiss-Prot
Match: DCOR_MUSPA (Ornithine decarboxylase OS=Mus pahari GN=Odc1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.001e-31
Identity = 78/168 (46.43%), Postives = 101/168 (60.12%), Query Frame = 2
Query:  182 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGVSPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLXAAEASGLSVVGVSFHVGS 685
            D+  FY+ DLG ++  +   +  LP + P YAVKCN            G+ FDC S++EI+ V  LGV P+RIIYANPCK VS IKYAAS GV + T DS  EL K+   HPK+ L++RI + DDS A   L  K+GA      +  LL  A+   + V+GVSFHVGS
Sbjct:   36 DKDAFYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAATGTGFDCASKTEIQLVQGLGVPPERIIYANPCKQVSQIKYAASSGVQMMTFDSEIELMKVARAHPKAKLVLRI-ATDDSKAVCRLSVKFGATLKTSRL--LLERAKELNIDVIGVSFHVGS 200          
BLAST of EY711049 vs. ExPASy Swiss-Prot
Match: DCOR_CANAL (Ornithine decarboxylase OS=Candida albicans GN=SPE1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.307e-31
Identity = 78/170 (45.88%), Postives = 106/170 (62.35%), Query Frame = 2
Query:  182 DEVPFYLMDLGVVVSLYNHMISNLPMIHPHYAVKCNXXXXXXXXXXXXGSNFDCGSRSEIEAVLLLGV--SPDRIIYANPCKPVSHIKYAASVGVNLTTVDSVEELDKIRNWHPKSDLLIRIKSPDDSGAKYPLDSKYGAGHHPQEIMPLLXAAEASGLSVVGVSFHVGS 685
            DE  F++ DLG +++  N     LPM+ P+YAVKCN            G NFDC S++EI+ VL LG+  + +RIIYANPCK  S I++AA   VNLTTVD+V EL K+  +HP   +LIR+ + DDS A+  L +K+G   +   I  +L  A+  GL V GV+FHVGS
Sbjct:   73 DEDSFFVCDLGEIINSVNQWQQILPMVQPYYAVKCNSNPQILTTLSELGVNFDCASKNEIDLVLSLGIHQAHERIIYANPCKTNSFIRHAADENVNLTTVDNVHELYKLAKFHPHCKILIRLIT-DDSTAQCQLSTKFGCDLN-TAIGEILPKAKELGLQVHGVAFHVGS 240          
The following BLAST results are available for this feature:
BLAST of EY711049 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
DCOR_DATST5.161e-5048.20Ornithine decarboxylase OS=Datura stramonium PE=2 ... [more]
DCOR_SOLLC9.521e-4952.55Ornithine decarboxylase OS=Solanum lycopersicum GN... [more]
DCOR_CAPAN3.886e-4748.57Ornithine decarboxylase OS=Capsicum annuum GN=ODC ... [more]
DCOR_YEAST3.889e-3748.81Ornithine decarboxylase OS=Saccharomyces cerevisia... [more]
DCOR_DICDI4.341e-3545.24Probable ornithine decarboxylase OS=Dictyostelium ... [more]
DCOR_SCHPO2.382e-3343.09Ornithine decarboxylase OS=Schizosaccharomyces pom... [more]
DCOR_HUMAN7.663e-3246.43Ornithine decarboxylase OS=Homo sapiens GN=ODC1 PE... [more]
DCOR_RAT1.001e-3147.02Ornithine decarboxylase OS=Rattus norvegicus GN=Od... [more]
DCOR_MUSPA1.001e-3146.43Ornithine decarboxylase OS=Mus pahari GN=Odc1 PE=2... [more]
DCOR_CANAL1.307e-3145.88Ornithine decarboxylase OS=Candida albicans GN=SPE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-B09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711049 ID=EY711049; Name=EY711049; organism=Citrus sinensis; type=EST; length=900bp
CCACGCGTCCGCCCAATCTTTTCTCCATCTATTTGCCATGGCCTCGTGCC
CAAAGGGAACTCCAAGCACATTATTGCATTTGGATGCACAAGTAATGGGA
GGCCAGAGAGTCACGACGGTGGTAACAAAAGATGAGCTAACTGAATTCAT
GCAGTCAACAATCTTGAAGAGACAAGAGTTCGATGAAGTACCCTTTTACC
TAATGGATTTAGGCGTTGTGGTTTCTCTCTACAATCATATGATCTCAAAC
CTTCCGATGATTCATCCTCACTATGCCGTCAAGTGCAATCCCGAGCCAGC
CCTTCTCGAGGCACTTGCAGCTCTTGGCTCAAACTTTGACTGTGGAAGCC
GATCCGAGATTGAAGCTGTTTTGTTACTAGGTGTTTCACCGGATCGTATC
ATTTACGCAAACCCGTGTAAGCCTGTATCTCACATCAAGTATGCTGCGAG
TGTTGGCGTCAACTTGACAACCGTTGACTCAGTAGAGGAGCTCGACAAGA
TTCGGAACTGGCATCCGAAATCTGATTTATTGATCAGGATCAAATCCCCG
GATGATAGCGGAGCGAAGTATCCGTTGGATTCCAAATATGGCGCTGGTCA
TCATCCTCAGGAAATTATGCCTCTTCTCNAAGCCGCTGAAGCTTCAGGGC
TCTCTGTAGTTGGTGTATCATTCCACGTTGGAAGCGAAGCTACAAACTTT
GCTGCATTTCGCGGAGCCATAGCAGCGGCTAAAGCAGTCTTTGACACAGC
CGCTCGCACGAGTAACACAAAATGCGTGTACTAGATATCNGCGGCGGCTT
CAGCTTTCACTATTTCAACCCAAATTATTTCCAGAAGCGGCTTTCATCAT
AAAAGAAGCTCTTTCAGCTTATTTTCCGAACGAATATTACCTGNATCGAG
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