EY711047

Overview
NameEY711047
Unique NameEY711047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length888
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11650 contig Csv1_Contig11650:46..934. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of EY711047 vs. ExPASy Swiss-Prot
Match: PLSC_COCNU (1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Cocos nucifera PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.965e-41
Identity = 87/166 (52.41%), Postives = 110/166 (66.27%), Query Frame = 3
Query:   84 MDNTGGASFMRNRRFESFLDTSCEQPNVKEPPRVSVKQEAGFRPKAETDQYVDDDGFISVLISYVRIXXXXXXXXXXXXXWAIVMLLLLPWPYQRIRQGNIYGHVTGRLLMWILGNPVKIEGTEFADKRAIYISNHASPIDIFLLMWLTPTGTVGIAKKEV*VNPL 581
            MD +G +SF+R R  ES    S      K+        +   RP A+ D +VDDD +I+V++S VRI             W ++ML+LLPWPY RIRQGN+YGHVTGR+LMWILGNP+ IEG+EF++ RAIYI NHAS +DIFL+MWL P GTV IAKKE+   PL
Sbjct:    1 MDASGASSFLRGRCLESCFKASFGMSQPKD-----AAGQPSRRP-ADADDFVDDDRWITVILSVVRIAACFLSMMVTTIVWNMIMLILLPWPYARIRQGNLYGHVTGRMLMWILGNPITIEGSEFSNTRAIYICNHASLVDIFLIMWLIPKGTVTIAKKEIIWYPL 160          
BLAST of EY711047 vs. ExPASy Swiss-Prot
Match: PLSC_LIMDO (1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Limnanthes douglasii GN=PLSC PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.394e-32
Identity = 66/132 (50.00%), Postives = 83/132 (62.88%), Query Frame = 3
Query:  186 SVKQEAGFRPKAETDQYVDDDGFISVLISYVRIXXXXXXXXXXXXXWAIVMLLLLPWPYQRIRQGNIYGHVTGRLLMWILGNPVKIEGTEFADKRAIYISNHASPIDIFLLMWLTPTGTVGIAKKEV*VNPL 581
            S++     +P        D DG   VL+S  +I             W ++M+LLLPWPY RIR GN+YGH+ G L++WI G P+KI+G+E   KRAIYISNHASPID F +MWL P GTVG+AKKEV   PL
Sbjct:    8 SLRNRRQLKPAVAATADDDKDGVFMVLLSCFKIFVCFAIVLITAVAWGLIMVLLLPWPYMRIRLGNLYGHIIGGLVIWIYGIPIKIQGSEHTKKRAIYISNHASPIDAFFVMWLAPIGTVGVAKKEVIWYPL 139          
BLAST of EY711047 vs. ExPASy Swiss-Prot
Match: PLSC_LIMAL (1-acyl-sn-glycerol-3-phosphate acyltransferase OS=Limnanthes alba PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 3.720e-31
Identity = 62/114 (54.39%), Postives = 78/114 (68.42%), Query Frame = 3
Query:  240 DDDGFISVLISYVRIXXXXXXXXXXXXXWAIVMLLLLPWPYQRIRQGNIYGHVTGRLLMWILGNPVKIEGTEFADKRAIYISNHASPIDIFLLMWLTPTGTVGIAKKEV*VNPL 581
            D DG   VL+S  +I             W ++M+LLLPWPY RIR GN+YGH+ G L++W+ G P++I+G+E   KRAIYISNHASPID F +MWL P GTVG+AKKEV   PL
Sbjct:   26 DKDGIFMVLLSCFKIFVCFAIVLITAVAWGLIMVLLLPWPYMRIRLGNLYGHIIGGLVIWLYGIPIEIQGSEHTKKRAIYISNHASPIDAFFVMWLAPIGTVGVAKKEVIWYPL 139          
The following BLAST results are available for this feature:
BLAST of EY711047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PLSC_COCNU3.965e-4152.411-acyl-sn-glycerol-3-phosphate acyltransferase OS=... [more]
PLSC_LIMDO4.394e-3250.001-acyl-sn-glycerol-3-phosphate acyltransferase OS=... [more]
PLSC_LIMAL3.720e-3154.391-acyl-sn-glycerol-3-phosphate acyltransferase OS=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-B07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711047 ID=EY711047; Name=EY711047; organism=Citrus sinensis; type=EST; length=888bp
TGAAAAATTGTTGGGGGAAGGAACGATCTTGTTTTACCCAAAAAAAAAAA
AAACTTGTGTAGACTTCGGCTGTTGTTGACTGAATGGATAACACCGGAGG
TGCTTCTTTTATGAGGAACAGAAGATTTGAGAGCTTTCTTGATACCAGTT
GTGAACAACCAAACGTGAAAGAGCCACCGAGAGTTTCAGTGAAACAAGAA
GCGGGATTTAGGCCAAAAGCCGAAACTGATCAATATGTTGATGATGATGG
ATTTATCTCTGTGTTGATATCTTATGTGAGAATTGTTACATGTTTCGTTA
CAATGATGGTTACAACATTCGTCTGGGCAATCGTCATGCTTTTGCTCCTA
CCGTGGCCCTATCAGAGGATTCGGCAGGGCAATATTTATGGCCATGTTAC
TGGGAGATTATTGATGTGGATATTAGGGAATCCAGTAAAAATTGAGGGTA
CTGAATTCGCTGATAAAAGGGCGATATATATAAGCAATCATGCGTCTCCT
ATCGACATCTTTCTCCTAATGTGGTTGACTCCAACGGGCACTGTTGGCAT
TGCAAAGAAAGAGGTATGAGTTAATCCTTTAAGAATTAACCTTGAATCTA
ATTTTGGCTTTCAGTTTGTGTGATTTCTGAACGCCTCTGGACTGATTGAC
TTCATTGATGCANTTTGTGGGTTATGTTCTTGAAAATCACACGGTGAGTT
GTTGCCTTGCAAAATGTATCATNATAATGTTGATGGCTGATNGTAGTTCT
TTAAGTACACANGGTAAAATTGATTGTGAATCTCGAGTTTTGAGTAATGA
ATGAGAATTTTATTTTTCCAGATCATATGGTATCCTCTATTTGGGCAACT
TTATGTTTTGGCCAACATATCCGCATAGATCGCTCCAC
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