EY711045

Overview
NameEY711045
Unique NameEY711045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8094 contig Csv1_Contig8094:703..1611. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711045 vs. ExPASy Swiss-Prot
Match: COP1_ARATH (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2)

HSP 1 Score: 371.318 bits (952), Expect = 2.164e-123
Identity = 182/241 (75.52%), Postives = 212/241 (87.97%), Query Frame = 2
Query:   14 RYSVKLRMLGDDSNTRKSWVSSIDKNSSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGHQRKDSLTGSDSQCLNQSGLSVVRKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 736
            RYSVKLRMLGDD +TR +W    +KN  G  ++SL+ RGG+  G+ QNKK +GKAQ +SHG  +KD+L+GSDSQ LNQS +S+ RKKR+HAQFNDLQECYLQKRRQ+A+QP++KQE+DK+++ REGY+ GLADFQSVLTTFTRYSRLRVIAE+RHGDIFHSANIVSSIEFDRDD+LFATAGVSR IKVFDF+SVVNEPAD+ CP+VEM TRSKLSCLSWNK  KN IASSDYEGIVTVWDV
Sbjct:  212 RYSVKLRMLGDDPSTRNAWPH--EKNQIGFNSNSLSIRGGNFVGNYQNKKVEGKAQGSSHGLPKKDALSGSDSQSLNQSTVSMARKKRIHAQFNDLQECYLQKRRQLADQPNSKQENDKSVVRREGYSNGLADFQSVLTTFTRYSRLRVIAEIRHGDIFHSANIVSSIEFDRDDELFATAGVSRCIKVFDFSSVVNEPADMQCPIVEMSTRSKLSCLSWNKHEKNHIASSDYEGIVTVWDV 450          

HSP 2 Score: 93.5893 bits (231), Expect = 2.164e-123
Identity = 43/50 (86.00%), Postives = 46/50 (92.00%), Query Frame = 1
Query:  736 TTQQSVMEYEEHXKRAWSXDFSRTEPSMLVSGSDDCKX*VWCTRQEASVL 885
            TT+QS+MEYEEH KRAWS DFSRTEPSMLVSGSDDCK  VWCTRQEASV+
Sbjct:  451 TTRQSLMEYEEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTRQEASVI 500          
BLAST of EY711045 vs. ExPASy Swiss-Prot
Match: COP1_PEA (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 1.995e-121
Identity = 188/241 (78.01%), Postives = 209/241 (86.72%), Query Frame = 2
Query:   14 RYSVKLRMLGDDSNTRKSWVSSIDKNSSGIITSSLNARGGSSAGSLQNKKGDGKAQANSHGH--QRKDSLTGSDSQCLNQSGLSVVRKKRVHAQFNDLQECYLQKRRQMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVW 730
            RYSVKLRML DDS  RKS  SS+D NSSG+ +S LN RGG S+GS   KK DGK+Q +SHGH  QR+D +TGSDSQ +NQSGL++VRKKRVH QFNDLQECYLQKRRQ A++PH +QE D N I REGY+ GL DFQSVLTTFTRYSRLRVIAE+RHGDIFHSANIVSSIEFDRDD LFATAGVSRRIKVFDF++VVNEP D HCPVVEM TRSKLSCLSWNK++KN+IASSDYEGIVTVW
Sbjct:  207 RYSVKLRML-DDSGGRKSRHSSMDLNSSGLASSPLNLRGGLSSGS-HTKKNDGKSQISSHGHGIQRRDPITGSDSQYINQSGLALVRKKRVHTQFNDLQECYLQKRRQAADKPHGQQERDTNFISREGYSCGLDDFQSVLTTFTRYSRLRVIAEIRHGDIFHSANIVSSIEFDRDDDLFATAGVSRRIKVFDFSAVVNEPTDAHCPVVEMTTRSKLSCLSWNKYAKNQIASSDYEGIVTVW 445          

HSP 2 Score: 89.7373 bits (221), Expect = 1.995e-121
Identity = 41/50 (82.00%), Postives = 45/50 (90.00%), Query Frame = 1
Query:  736 TTQQSVMEYEEHXKRAWSXDFSRTEPSMLVSGSDDCKX*VWCTRQEASVL 885
            TT++S+MEYEEH KRAWS DFSRT+PSMLVSGSDDCK  VWCT QEASVL
Sbjct:  448 TTRKSLMEYEEHEKRAWSVDFSRTDPSMLVSGSDDCKVKVWCTNQEASVL 497          
BLAST of EY711045 vs. ExPASy Swiss-Prot
Match: RFWD2_MOUSE (E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 7.601e-39
Identity = 65/158 (41.14%), Postives = 101/158 (63.92%), Query Frame = 2
Query:  266 RKKRVHAQFNDLQECYLQKRR-QMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHG-DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 733
            R+KR+ A F DL++CY   R  ++++   T  + D              +FQ  L+ FTRY+ +R +A L +  D+++ ++IVSSIEFDRD   FA AGV+++IKV+++ +V+ +  D+H P  EM   SK+SC+SW+ + KN +ASSDYEG V +WD
Sbjct:  358 RRKRLTAHFEDLEQCYFSTRMSRISDDSRTASQLD--------------EFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYGTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWD 501          

HSP 2 Score: 51.6026 bits (122), Expect = 7.601e-39
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 1
Query:  730 GCTTQQSVMEYEEHXKRAWSXDFSRTEPSMLVSGSDDCKX*VWCTRQEASV 882
            G T Q+S + Y+EH KR WS DF+  +P +L SGSDD K  +W T  + SV
Sbjct:  502 GFTGQRSKV-YQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSV 551          
BLAST of EY711045 vs. ExPASy Swiss-Prot
Match: RFWD2_HUMAN (E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.290e-38
Identity = 65/158 (41.14%), Postives = 101/158 (63.92%), Query Frame = 2
Query:  266 RKKRVHAQFNDLQECYLQKRR-QMANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHG-DIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 733
            R+KR+ A F DL++CY   R  ++++   T  + D              +FQ  L+ FTRY+ +R +A L +  D+++ ++IVSSIEFDRD   FA AGV+++IKV+++ +V+ +  D+H P  EM   SK+SC+SW+ + KN +ASSDYEG V +WD
Sbjct:  356 RRKRLTAHFEDLEQCYFSTRMSRISDDSRTASQLD--------------EFQECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTKKIKVYEYDTVIQDAVDIHYPENEMTCNSKISCISWSSYHKNLLASSDYEGTVILWD 499          

HSP 2 Score: 51.6026 bits (122), Expect = 1.290e-38
Identity = 25/51 (49.02%), Postives = 33/51 (64.71%), Query Frame = 1
Query:  730 GCTTQQSVMEYEEHXKRAWSXDFSRTEPSMLVSGSDDCKX*VWCTRQEASV 882
            G T Q+S + Y+EH KR WS DF+  +P +L SGSDD K  +W T  + SV
Sbjct:  500 GFTGQRSKV-YQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSV 549          
BLAST of EY711045 vs. ExPASy Swiss-Prot
Match: SPA1_ARATH (Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis thaliana GN=SPA1 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.954e-36
Identity = 67/202 (33.17%), Postives = 106/202 (52.48%), Query Frame = 2
Query:  188 SHGH-QRKDSLTGSDSQCLNQSGLSV--VRKKRVHAQFNDLQECYLQKRRQM-ANQPHTKQESDKNIIHREGYNAGLADFQSVLTT----------------FTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWD 733
            SHG  +++   +  D  C   S L V      R+ +    L++ Y   R Q+  +       SDK +  R+  +    + Q + T                 F RYS+      +R GD+ +SA++V S+ FD D++  A AG+S++IK+FDF + +NE   VH P+VEM  +SKLSC+ WN + KN +AS+DY+G+V +WD
Sbjct:  593 SHGAIEKRVQSSPLDEHCTTSSALFVPTANTDRLMSNIRQLEDAYFFMRSQINLSSSAATARSDKTLKDRDRCSENQNENQDMSTKGKSSDQLEVFFEGLCKFARYSKFETCGTIRSGDLLNSASVVCSLSFDPDEEHIAAAGISKKIKIFDFNAFMNESVGVHYPLVEMVNKSKLSCVCWNSYIKNYLASTDYDGVVQIWD 794          

HSP 2 Score: 54.6842 bits (130), Expect = 1.954e-36
Identity = 24/50 (48.00%), Postives = 32/50 (64.00%), Query Frame = 1
Query:  739 TQQSVMEYEEHXKRAWSXDFSRTEPSMLVSGSDDCKX*VWCTRQEASVLT 888
            T Q   +Y EH KRAWS DFS ++P+  VSGSDDC   +W   ++ S+ T
Sbjct:  797 TGQGFSQYTEHQKRAWSVDFSPSDPTKFVSGSDDCSVKLWSINEKRSLGT 846          
BLAST of EY711045 vs. ExPASy Swiss-Prot
Match: SPA2_ARATH (Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=SPA2 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 6.071e-35
Identity = 65/180 (36.11%), Postives = 99/180 (55.00%), Query Frame = 2
Query:  242 NQSGLSVVRKKRVHAQFNDLQECYLQKRRQMANQPHTK----------QESDKNIIHREGYNAGLAD-----FQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDV 736
            + S  S V + R+    N L+  Y   R   A+ P  +          + SD  +   E      +D     F   L  + RYS+      LR  ++ +++N++ S+ FDRD+  FATAGVS++IK+++F S+ NE  D+H P +EMP RSKLS + WN + +N +ASSDY+GIV +WDV
Sbjct:  624 SSSPASSVPEMRLIRNINQLESAYFAARID-AHLPEARYRLRPDRDLLRNSDNTVAEVENSETWSSDDRVGAFFDGLCKYARYSKFETRGVLRTSELNNTSNVICSLGFDRDEDYFATAGVSKKIKIYEFNSLFNESVDIHYPAIEMPNRSKLSGVCWNNYIRNYLASSDYDGIVKLWDV 802          

HSP 2 Score: 51.2174 bits (121), Expect = 6.071e-35
Identity = 22/41 (53.66%), Postives = 27/41 (65.85%), Query Frame = 1
Query:  736 TTQQSVMEYEEHXKRAWSXDFSRTEPSMLVSGSDDCKX*VW 858
            TT Q++  + EH KRAWS DFS   P+ L SGSDDC   +W
Sbjct:  803 TTGQAISHFIEHEKRAWSVDFSEACPTKLASGSDDCSVKLW 843          
BLAST of EY711045 vs. ExPASy Swiss-Prot
Match: SPA3_ARATH (Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=SPA3 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.520e-27
Identity = 63/148 (42.57%), Postives = 99/148 (66.89%), Query Frame = 2
Query:  368 KNIIHREGYNAGLAD-FQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVQLSRV*WNMKS-XENVHGVXISHA 805
            K   + +    G  D F   L  +  +S+LRV A+L+ GD+ +S+N+V ++ FDR+ +LFATAGV+++IK+F+  S+VN+  D+H PVVE+  RSKLS L WN + K++IASS+++G+V +WDV  S++   MK   + V  + IS A
Sbjct:  490 KAFFNNDSRQGGWIDPFLEGLCRYLSFSQLRVKADLKQGDLLNSSNLVCALAFDREGELFATAGVNKKIKIFECNSIVNDNRDIHYPVVELAGRSKLSSLCWNSYIKSQIASSNFDGVVQIWDVARSQLVTEMKEHKKRVWSIDISSA 637          
BLAST of EY711045 vs. ExPASy Swiss-Prot
Match: SPA4_ARATH (Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=SPA4 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.593e-27
Identity = 57/147 (38.78%), Postives = 98/147 (66.67%), Query Frame = 2
Query:  335 ANQPHTKQESDKNIIHREGYNAGLADFQSVLTTFTRYSRLRVIAELRHGDIFHSANIVSSIEFDRDDQLFATAGVSRRIKVFDFASVVNEPADVHCPVVEMPTRSKLSCLSWNKFSKNRIASSDYEGIVTVWDVQLSRV*WNMKSXE 775
            +++  +  +  K+ I+       +  F   L  +  +S+LRV A+L+ GD+ +S+N+V +I FDRD + FATAGV+++IK+F+  S++ +  D+H PVVE+ +RSKLS + WN + K+++ASS++EG+V VWDV  +++   MK  E
Sbjct:  430 SSEKSSMSQPSKDPINDSRQGGWIDPFLEGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARNQLVTEMKEHE 576          
The following BLAST results are available for this feature:
BLAST of EY711045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
COP1_ARATH2.164e-12375.52E3 ubiquitin-protein ligase COP1 OS=Arabidopsis th... [more]
COP1_PEA1.995e-12178.01E3 ubiquitin-protein ligase COP1 OS=Pisum sativum ... [more]
RFWD2_MOUSE7.601e-3941.14E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus ... [more]
RFWD2_HUMAN1.290e-3841.14E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens ... [more]
SPA1_ARATH1.954e-3633.17Protein SUPPRESSOR OF PHYA-105 1 OS=Arabidopsis th... [more]
SPA2_ARATH6.071e-3536.11Protein SPA1-RELATED 2 OS=Arabidopsis thaliana GN=... [more]
SPA3_ARATH1.520e-2742.57Protein SPA1-RELATED 3 OS=Arabidopsis thaliana GN=... [more]
SPA4_ARATH2.593e-2738.78Protein SPA1-RELATED 4 OS=Arabidopsis thaliana GN=... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-B05-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711045 ID=EY711045; Name=EY711045; organism=Citrus sinensis; type=EST; length=908bp
CGGACGCGTGGGTCGGTACTCTGTTAAATTGCGGATGCTTGGAGATGATT
CTAATACAAGAAAGTCATGGGTTTCATCAATAGACAAGAACAGCAGTGGT
ATCATCACCAGTTCTCTGAATGCAAGAGGAGGGTCGTCTGCAGGAAGTCT
TCAAAACAAGAAAGGGGATGGAAAAGCTCAAGCAAACTCTCATGGACATC
AGAGGAAGGATTCTTTGACTGGGTCGGACTCACAGTGTCTTAATCAATCG
GGTCTGTCTGTTGTAAGAAAAAAGCGAGTCCATGCACAGTTCAATGACCT
ACAAGAGTGTTATCTGCAAAAGCGTCGTCAGATGGCAAACCAGCCACATA
CTAAGCAAGAAAGTGATAAAAACATTATACACAGAGAGGGCTATAATGCT
GGTCTTGCAGATTTTCAATCTGTGCTAACTACTTTTACTCGGTACAGTCG
ACTGAGGGTTATTGCTGAACTTCGGCATGGTGATATATTTCATTCAGCCA
ATATAGTATCAAGCATAGAATTTGACCGCGATGATCAGTTGTTTGCAACT
GCTGGTGTTTCCCGACGCATTAAGGTCTTTGACTTCGCATCGGTTGTGAA
TGAACCTGCAGATGTACATTGTCCTGTCGTGGAGATGCCAACACGTTCTA
AACTTAGTTGCTTGAGTTGGAATAAATTCTCAAAAAATCGCATAGCTAGT
AGTGATTATGAGGGAATAGTTACTGTTTGGGATGTACAACTCAGCAGAGT
GTAATGGAATATGAAGAGCATNGAAAACGTGCATGGAGTGNTGATTTCTC
ACGCACAGAACCGTCAATGCTTGTATCNGGTAGTGATGATTGTAAGGNNT
AAGTTTGGTGCACGAGGCAGGAAGCTAGCGTTCTTACATCGACATGAAAG
CAATATCT
back to top