EY711044

Overview
NameEY711044
Unique NameEY711044
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length875
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY711044_ssr423 microsatellite EY711044_ssr423:423..432. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY711044 vs. ExPASy Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.059e-24
Identity = 55/117 (47.01%), Postives = 68/117 (58.12%), Query Frame = 3 
Query:  348 SPSPRNAPKPAATSTTVAP-NXXXXXXXXXXXXXXXXXXXDFSGRRSTRFVSKMHFGRPKIAMSTRHSVVAEEALHHVTAFARDDVSLGDILKKFEFKLCGADDYTXLLRELGNPSE 695
            S SPR +  P ++  TVAP                     DFSGRRSTRFVSKMHFGR K  M+TRHS  AE+AL +   F+ DD     ++  FE KLCG+DD T ++RELGN +E
Sbjct:   95 SSSPRGSAPPPSSVATVAPAQLSQPPNFSPLQTPKSDLSSDFSGRRSTRFVSKMHFGRQKTTMATRHSSAAEDALQNAIDFSGDDEMFHSLMLSFESKLCGSDDCTYIIRELGNRNE 211

HSP 2 Score: 31.5722 bits (70), Expect = 6.059e-24
Identity = 18/35 (51.43%), Postives = 20/35 (57.14%), Query Frame = 2 
Query:  701 KAIXMFAFAVKREEXKMIXGN-XECMISILGRLGK 802
            KA+  + FAVKRE  K   G     MIS LGR GK
Sbjct:  214 KAVGFYEFAVKRERRKNEQGKLASAMISTLGRYGK 248
The following BLAST results are available for this feature:
BLAST of EY711044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP178_ARATH6.059e-2447.01Pentatricopeptide repeat-containing protein At2g31... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-003-B04-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711044 ID=EY711044; Name=EY711044; organism=Citrus sinensis; type=EST; length=875bp
CCACGCGTCCGCTGCTTTCTCACTCCCAAATGTCCTCGACAACAGCAATG
GCCGCTTCATCTCCTTCTTTTCTCACCAAACCCCCCCTAAACCCTCTTTA
GCCTCCAGAACGCTCCTATCTCGTATCTATCATATACACGTATACACGTA
TTTATCTACAAAAATTGGGGAGCTTGACCTGAATGGCGTCAACGCCGCCG
CACTGTTCAATCACGGCGACAAAGCCGTACCAAAATCATCAGTATCCACA
TAACCATCTCAAAAACAATCACCACCGTCAATCTCACCACCCAAGCTCTC
GCCCTCACTGGACTTCTCATAAGGTCTCCCTCACCAAACCCCCTCTCTCC
CCCTCACCCCGCAATGCACCGAAGCCGGCTGCTACCTCCACTACCGTCGC
CCCAAACCCTAAACCTTTCCATTCTCTCTCTCCACTTCCCTCCTCAAAAT
CCGAACTTGCTCCTGATTTCTCCGGCCGCCGGTCCACTCGCTTCGTTTCC
AAAATGCACTTCGGGCGCCCCAAAATTGCTATGAGCACGCGCCACTCGGT
AGTAGCTGAAGAAGCACTTCACCACGTCACTGCTTTCGCTAGAGATGACG
TGTCTCTCGGTGATATTTTGAAAAAGTTCGAGTTTAAACTCTGTGGTGCT
GACGACTACACGNTCCTGCTTCGAGAGCTTGGGAACCCGAGTGAGTGGTA
AAGGCCATCCNNATGTTTGCCTTTGCAGTCAAAAGGGAGGAAANGAAGAT
GATCANGGGAAATANCGAGTGCATGATCAGCATTCTTGGTAGATTAGGAA
AAAGTGATCCTGCGTAGATATTTTCGAACTGCGTTAATGAAGGTATGGAA
ACCTGAAATGCTTTTTCTGCGTAAT
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