EY711004

Overview
NameEY711004
Unique NameEY711004
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY711004 vs. ExPASy Swiss-Prot
Match: TMVRN_NICGU (TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.335e-11
Identity = 39/78 (50.00%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:   13 LRDLNLNDCGIM--GLPESLGLLSSVTKLHLEGNNFERLPESIIQLSNLERLFIRYCERLQSLPKLP--CNLLSLDAH 234
            L  LNL+ C ++  GLPE +G LSS+ KL L  NNFE LP SI QL  L+ L ++ C+RL  LP+LP   N L +D H
Sbjct:  835 LEYLNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELHVDCH 912
The following BLAST results are available for this feature:
BLAST of EY711004 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TMVRN_NICGU5.335e-1150.00TMV resistance protein N OS=Nicotiana glutinosa GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-002-F02-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711004 ID=EY711004; Name=EY711004; organism=Citrus sinensis; type=EST; length=862bp
CCACGCGTCCGTCTAAGGGATTTAAATCTAAATGATTGCGGCATCATGGG
GTTACCTGAAAGTCTTGGCCTGTTATCCTCAGTAACAAAACTGCATCTAG
AGGGAAACAATTTTGAGAGATTACCAGAAAGCATCATACAACTTTCTAAT
TTGGAAAGGCTCTTCATAAGGTATTGCGAGAGGCTTCAATCCTTACCAAA
GCTTCCATGCAATCTACTTTCGTTGGATGCACATCATTGCACAGCACTGG
AATCATTACCAGATTTATTCCCAAGTAGTGATGAATCTTATTTACGGACT
TTATACCTGAGCGATAATTTTAAATTGGATCGGAATGAGATTAGAGGAAT
TGTCAAGGGAGCTCTGCAGAAAATTCAACTTTTGGCAACCGCACGTCTAA
AAGAAGCACGGGAAAAGGTATGTCGTTAATTAACTCTCTCCTTTTTATTT
AGAAAAGAAGCTAAAGAAAAAGATGACAGAATGAACAATAACGCGGTGTG
TGGTGATATAATGTTAATTGATTACTTTGTCCTCTTTCTTTGACGCCACA
TAATTTTACAGTTAATTCTAACTTTTTCCGATTAAATTTTTCTGTTTAAA
TATTAGTGATCTTTATTCTATTAAGTGGTGNTAAATAATTTTTATTTTTT
ATTTTTTTAAAAATATGATCGTGTGTATATATAGATATCCTATCCATCAC
TTCGAGGTCGCGGCTTTTTACCTTGAATAAAATCCNAANGTGTNNTAGCT
TCAAGTGCCGGATCTTGTGTAACCTTGAGATGCCTCAGATTNCTTCATAT
AAAATGTACTCGGCTTGCTTTTTGCGTATTGTAATTTTACAGAAAGTTAC
TTTTCTNACACT
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