EY711002

Overview
NameEY711002
Unique NameEY711002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length914
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10496 contig Csv1_Contig10496:1..913. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY711002 vs. ExPASy Swiss-Prot
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.594e-16
Identity = 46/61 (75.41%), Postives = 52/61 (85.25%), Query Frame = 2
Query:   89 KPAPFTVEKSAARGLPSL--AKTSFKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAK 262
            KPA FTVEK+AARGLPSL  A+ SFKIVA G  KIKTDKP+G+NG MDLR+G+DASGRK K
Sbjct:   13 KPAGFTVEKTAARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGK 73          
BLAST of EY711002 vs. ExPASy Swiss-Prot
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.301e-15
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 2
Query:   89 KPAPFTVEKSAARGLPSLAK---TSFKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAK 262
            KPA FTVEK +ARGLPSL +   +SF+IVA G  KIKTDKP+GVNG MDLR+G+DASGRK K
Sbjct:   13 KPAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGK 74          
BLAST of EY711002 vs. ExPASy Swiss-Prot
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.744e-15
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 2
Query:   89 KPAPFTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAK 262
            KPAPF+VEK+A +GLPSLA++S  F++ A G  K+KTDKPYG+NG M LR+G+DASGRK K
Sbjct:    9 KPAPFSVEKTAVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQK 69          
BLAST of EY711002 vs. ExPASy Swiss-Prot
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.069e-12
Identity = 37/57 (64.91%), Postives = 48/57 (84.21%), Query Frame = 2
Query:  101 FTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAK 262
            FT+EK++ +GLPSLA++S  FK+VA G  K+KTDKPYG+NG M LR+G+DASGRK K
Sbjct:   15 FTLEKTSVKGLPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPK 71          
BLAST of EY711002 vs. ExPASy Swiss-Prot
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.928e-12
Identity = 36/57 (63.16%), Postives = 46/57 (80.70%), Query Frame = 2
Query:  101 FTVEKSAARGLPSLAKTS--FKIVAKG-GKIKTDKPYGVNGGMDLREGLDASGRKAK 262
            FT+EK + +GLPSL ++S  FK+VA G  K+KTDKPYG+NG M LR+G+DASGRK K
Sbjct:   15 FTLEKISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPK 71          
The following BLAST results are available for this feature:
BLAST of EY711002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBR_ARATH1.594e-1675.41Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_BRACM2.301e-1570.97Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_TOBAC8.744e-1565.57Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLTU1.069e-1264.91Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
PSBR_SOLLC6.928e-1263.16Photosystem II 10 kDa polypeptide, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-002-E12-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY711002 ID=EY711002; Name=EY711002; organism=Citrus sinensis; type=EST; length=914bp
CCACGCGTCCGGAAAATTAACGAAAACAAAACAGGAGAGCACAGCAAAGC
AAATGGCAGCCTCAGTGATGGCTTCTTCGTTGAGCCTGAAACCAGCTCCT
TTCACTGTGGAGAAATCAGCAGCGAGAGGCCTTCCCTCTCTTGCTAAAAC
TTCATTCAAAATTGTGGCTAAAGGCGGCAAGATCAAAACCGACAAACCCT
ATGGAGTAAATGGTGGTATGGATTTGAGGGAAGGTCTGGATGCATCCGGC
AGGAAGGCTAAGGTTTGTGTCCAGCAATTTTGTCATTTTATTTATGTACT
CTTTTTAGATAAATTCTTCTAGCTGCTTCTCTCTCGAGTCCATTACTTCA
ATTTCTCTAAGTTTATTGTTTTTCTAAAATATTTATAATTTTTTCATATG
TTCTCTTACTTGAGTATCAATTTCTTTGTTGTCTTTGAAACTAATGAAAA
TTTCATCTTGTTTCATTGTAGTATAAATTCCTTAATCAACAACCTTTGAA
TTCAGGCGAATTATTTGTATATATATTTGGTAATTAACTGTTTCTTTGTG
AACAGTTATATTCAATGCTAACTGTTTTGCACCTTCATGCAAATCAAGCA
CTCATCAAGGAATTAATAATATTTCATCATCGAATCAAGAGCATAAGAGT
TCTTCCATTACAGTCAAAAGGCAAATTTCAAAAATATTGAGAAAAAAAAA
AAAGATGCGTTCATATACGCTTACACTGATAAGGCGAGGTTGAGCAAATC
GTTGATAGATTGATATGATATTAAAAGGGGCTTCNTAAGGGAAGGACATN
NGAAATATAATGNATTTCAATATTTATTTATATCTTTCCTTTGNCGGGNN
NTTTGATAATCTATATTCTGTTAACTCTTCAGCTTTTCAAATTGATACAG
GGGAAAGGTGTTAC
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