EY710997

Overview
NameEY710997
Unique NameEY710997
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length924
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10495 contig Csv1_Contig10495:1..926. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of EY710997 vs. ExPASy Swiss-Prot
Match: MUC2_HUMAN (Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.167e-13
Identity = 60/188 (31.91%), Postives = 92/188 (48.94%), Query Frame = 3
Query:   27 TKIPNPEGASTNSHLQTKTPNPKGASTTSSHLQTKTSNPEIASTNSHLQTKTPNPESASTNSHLQAKTPNPEGASTTSSHLQTKTPNPEIASTNSHLQTKTPNP-------EGASTDSHLQTKTPNPKGASTTNSHLQTKTPNP-------EGASTDSHLQTKTPNPKGASTTNSHLQTKTPNPKSAS 548
            T  P+P   +T +   T TP+P   +TT++   T T +P I +T + L T TP+P  ++T +     TP+P    TT+    T TP+P   +T +   T TP+P         AST +   T TP+P   +TT +   T TP+P          ST +   T TP+P   +TT +   T TP+P + +
Sbjct: 1403 TTTPSPPPTTTTTLPPTTTPSPP-TTTTTTPPPTTTPSPPITTTTTPLPTTTPSPPISTTTTPPPTTTPSP---PTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPMTTPITPPASTTTLPPTTTPSPP-TTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPP-PTTTTTPPPTTTPSPPTTT 1584          

HSP 2 Score: 76.2554 bits (186), Expect = 2.831e-13
Identity = 56/189 (29.63%), Postives = 94/189 (49.74%), Query Frame = 3
Query:   27 TKIPNPEGASTNSHLQTKTPNPKGASTTSSHLQTKTSNPEIASTNSHLQTKTPNPESASTNSHLQAKTPNPEGASTTSSHLQTKTPNPEI-------ASTNSHLQTKTPNPEGASTDSHLQTKTPNPKGA------STTNSHLQTKTPNPEGASTDSHLQTKTPNPKGASTTNSHLQTKTPNPKSASPT 554
            T  P+P   +T +   T TP+P   +TT++ L T T +P I++T +   T TP+P + + +      TP+P   +TT++   T TP+P +       AST +   T TP+P   +T +   T TP+P         ++T +   T TP+P   +T +   T TP+P   +T +    T T  P + +P+
Sbjct: 1419 TTTPSPPTTTTTTPPPTTTPSPP-ITTTTTPLPTTTPSPPISTTTTPPPTTTPSPPTTTPSP--PTTTPSPP-TTTTTTPPPTTTPSPPMTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPS 1603          

HSP 3 Score: 72.4034 bits (176), Expect = 4.088e-12
Identity = 55/191 (28.80%), Postives = 85/191 (44.50%), Query Frame = 3
Query:    3 TRPNSHLHTKIPNPEGASTNSHLQTKTPNPKGASTTSSHLQTKTSNPEIASTNSHLQTKTPNPESASTNSHLQAKTPNPEGASTTSSHLQTKTPNPEIASTNSHLQTKTPNPEGASTDSHLQTKTPNPKGAS------TTNSHLQTKTPNPEGASTDSHLQTKTPNPKGASTTNSHLQTKTPNPKSASPTN 557
            T P+  + T I  P  AST +   T TP+P   +TT+    T  S P          T T  P +  +       TP P   +TT S   T TP+P   +T +   T TP+P   +T +   T TP+P   +      +T +   T TP+P   +T +   T TP+P   +T +  + T T  P + +P++
Sbjct: 1498 TTPSPPMTTPITPP--ASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPP---TTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSS 1683          

HSP 4 Score: 70.8626 bits (172), Expect = 1.189e-11
Identity = 55/187 (29.41%), Postives = 83/187 (44.39%), Query Frame = 3
Query:   27 TKIPNPEGASTNSHLQTKTPNPKGASTTSSHLQTKTSNPEIA------STNSHLQTKTPNPESASTNSHLQAKTPNPEGASTTSSHLQTKTPNPEIASTNSHLQTKTPNPEGASTDSHLQTKTPNPKGASTTNSHLQTKTPNPEGASTDSHLQTKTPNPKGAS------TTNSHLQTKTPNPKSASP 551
            T  P+P   +T +   T TP+P   +TT+    T  S P         ST +   T TP+P   +T +     TP+P   +T S  + T T  P   + +S + T TP+P   +  +   T TP+    +TT +   T TP+P   +  +   T TP+P   +      TT S   T TP P S +P
Sbjct: 1583 TTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPI-TTTPSPPTTTMTTPSPTTTPS-SPITTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTTTSSPLTTTPLPPSITP 1767          

HSP 5 Score: 70.4774 bits (171), Expect = 1.553e-11
Identity = 52/161 (32.30%), Postives = 81/161 (50.31%), Query Frame = 3
Query:   90 PKGASTTSSHLQTKTSNPEIASTNSHLQTKTPNPESASTNSHLQAKTPNPEGASTTSSHLQTKTPNPEIASTNSHLQTKTPNPEGASTDSHLQTKTPNPKGASTTNSHLQTKTPNP-------EGASTDSHLQTKTPNPKGASTTNSHLQTKTPNPKSASP 551
            P     T+    T T +P   +T +   T TP+P + +T +     TP+P   +TT++ L T TP+P I++T +   T TP+P   +T     T TP+P   +TT +   T TP+P         AST +   T TP+P   +TT +   T TP+P + +P
Sbjct: 1391 PMDKCITTPSPPTTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTTTPSPP-ITTTTTPLPTTTPSPPISTTTTPPPTTTPSP--PTTTPSPPTTTPSPP-TTTTTTPPPTTTPSPPMTTPITPPASTTTLPPTTTPSPP-TTTTTTPPPTTTPSPPTTTP 1546          

HSP 6 Score: 70.4774 bits (171), Expect = 1.553e-11
Identity = 59/197 (29.95%), Postives = 90/197 (45.69%), Query Frame = 3
Query:    3 TRPNSHLHTKIPNPEGASTNSHLQTKTPNPKGASTTSSHLQTKTSNPEIASTNSHLQTKTPNP-------ESASTNSHLQAKTPNPEGASTTSSHLQTKTPNPEI-------ASTNSHLQTKTPNPEGASTDSHLQTKTPNPKGASTTNSHLQTKTPNPEGASTDSHLQTKTPNPKGASTTNSHLQTKTPNPKSASP 551
            T   + L T  P+P  ++T +   T TP+P    TT+    T T +P   +T +   T TP+P         AST +     TP+P   +TT++   T TP+P          ST +   T TP+P   +T +   T TP+P           T TP+P   +T +   T TP+P   +TT +   T TP+P + +P
Sbjct: 1443 TTTTTPLPTTTPSPPISTTTTPPPTTTPSP---PTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPMTTPITPPASTTTLPPTTTPSPP-TTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPP---------TTTTPSPPTITTTTPPPTTTPSPP-TTTTTTPPPTTTPSPPTTTP 1625          

HSP 7 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 55/195 (28.21%), Postives = 87/195 (44.62%), Query Frame = 3
Query:    3 TRPNSHLHTKIPNPEGASTNSHLQTKTPNPKGAST-----TSSHLQTKTSNPEIASTNSHLQTKTPNPESASTNSHLQAKTPNPEGA------STTSSHLQTKTPNPEIASTNSHLQTKTPNPEGASTDSHLQTKTPNPKGASTTNSHLQTKTPNPEGASTDSHLQTKTPNPKGASTTNSHLQTKTPNPKSASPT 554
            T P+    T I  P   +T     T +P P   +T     T S   T T +P   +T +   T TP+P + +T +     TP+P         ++T++   T TP+P   +T +   T TP+P   +T S   T T  P   +T +S + T TP+P   +  +   T TP+    +TT +   T TP+P   + T
Sbjct: 1537 TTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPI-TTTPSPPTTTMTTPSPTTTPS-SPITTTTTPSSTTTPSPPPTTMT 1729          
BLAST of EY710997 vs. ExPASy Swiss-Prot
Match: XYNA_RUMFL (Bifunctional endo-1,4-beta-xylanase xylA OS=Ruminococcus flavefaciens GN=xynA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.109e-12
Identity = 58/228 (25.44%), Postives = 77/228 (33.77%), Query Frame = -1
Query:    1 DGNWWGKHFWDWGFWFVDG------NWWWKHLWDWGFWFVDGNRWKHLRDWGFWFVDGNWW--WKHLW-----DWGFWFVDGNRW--------KHLRDWGFWFVDGNWWKQFRD--------WGFWFVDGNWWWKHLR--DWGFWLVNGNW---WKHFRDWGFWFVDGNW---WKQFRDWRFWFVDGNWWWKHLWDWGFWFVDGNWWKHLRD---WGFWCVDGNSDAW 564
            D N WG+   DW  W   G      N W +   DW  W   G +  +  DW  W    N W  W +       DW  W    N W        +   DW  W    N W Q+ +        W  W  + NW   + +  +W  W    NW    +   DW  W    NW    +Q  DW  W   G    +   DW  W    NW ++      W  W  + N + W
Sbjct:  267 DWNNWGQQNNDWNQWNNQGQQNNDWNNWGQQNNDWNQWNNQGQQQNN--DWNNWGQQNNDWNQWNNQGQQQNNDWNNWGQQNNDWNQWNNQGQQQNNDWNNWGQQNNDWNQWNNQNNNQQNAWNGWDNNNNWNQNNQQQNNWD-WNNQNNWNNNQQQNNDWNQWNNQNNWNNNQQQNNDWNQWNNQG----QQNNDWNQWNNQNNWNQNNNQQNAWNGWDNNNNWNQW 487          

HSP 2 Score: 71.633 bits (174), Expect = 7.009e-12
Identity = 58/223 (26.01%), Postives = 72/223 (32.29%), Query Frame = -1
Query:   37 DWRFWFKDG------NWWGKHFWDWGFWFVDG-------NWWWKHLWDWGFWFVDGNRWKHLRDWGFWFVDGNWW--WKHLW-----DWGFWFVDGNRWKHLRD--------WGFWFVDGNWWK---QFRDWGFWFVDGNWW--WKHLRDWGFWLVNGNW---WKHFRDWGFWFVDGNWWKQFRDWRFWFVDGNWWWKHLWD--WGFWFVDGNW--WKHLRDW 585
            DW  W   G      N WG+   DW  W   G       N W +   DW  W   G +  +  DW  W    N W  W +       DW  W    N W    +        W  W  + NW +   Q  +W  W    NW    +   DW  W    NW    +   DW  W    N  +Q  DW  W    NW   +     W  W  + NW  W     W
Sbjct:  277 DWNQWNNQGQQNNDWNNWGQQNNDWNQWNNQGQQQNNDWNNWGQQNNDWNQWNNQGQQQNN--DWNNWGQQNNDWNQWNNQGQQQNNDWNNWGQQNNDWNQWNNQNNNQQNAWNGWDNNNNWNQNNQQQNNWD-WNNQNNWNNNQQQNNDWNQWNNQNNWNNNQQQNNDWNQW---NNQGQQNNDWNQWNNQNNWNQNNNQQNAWNGWDNNNNWNQWDQNNQW 493          
The following BLAST results are available for this feature:
BLAST of EY710997 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MUC2_HUMAN2.167e-1331.91Mucin-2 OS=Homo sapiens GN=MUC2 PE=1 SV=2[more]
XYNA_RUMFL4.109e-1225.44Bifunctional endo-1,4-beta-xylanase xylA OS=Rumino... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-002-E07-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710997 ID=EY710997; Name=EY710997; organism=Citrus sinensis; type=EST; length=924bp
CCACGCGTCCGAATTCCCATCTACACACCAAAATCCCCAATCCCGAAGGT
GCTTCCACCAATTCCCATCTACAAACCAAAACCCCCAATCCCAAAGGTGC
TTCCACCACCAGTTCCCATCTACAAACCAAAACCTCCAATCCCGAAATTG
CTTCCACCAATTCCCATCTACAAACCAAAACCCCCAATCCCGAAAGTGCT
TCCACCAATTCCCATTTACAAGCCAAAACCCCCAATCCCGAAGGTGCTTC
CACCACCAGTTCCCATCTACAAACCAAAACCCCCAATCCCGAAATTGCTT
CCACCAATTCCCATCTACAAACCAAAACCCCCAATCCCGAAGGTGCTTCC
ACCGATTCCCATCTACAAACCAAAACCCCCAATCCCAAAGGTGCTTCCAC
CACCAATTCCCATCTACAAACCAAAACCCCCAATCCCGAAGGTGCTTCCA
CCGATTCCCATCTACAAACCAAAACCCCCAATCCCAAAGGTGCTTCCACC
ACCAATTCCCATCTACAAACCAAAACCCCCAATCCCAAAAGTGCTTCCCC
CACCAATTCCCATCTTTAAACCAAAACCTCCAATCCCAAAAGTACTTCCA
CCACTAGTTCCGATTTACAAACCAAAACCGCCAATCCCAAAAGTGCTTCC
ACCATCAATACCTATCTACAAACCAAAGCCACCAATCTTTAAGCCACTGC
CGCCACTTCTAAGATCCCACCATTCCCCAAGAAGCCATGCCCACCTTTTC
CAAAGCTTCCTCCCACTCCCAAGATTCCTCCAAAGTACAACGACCACCCC
AAGTTTGGAAAATGGCGACCTTTACCTCCCACTATTCCTCTATTTCCNTC
TCATCCTNAACTATATATTAATTAATAATTAATGCAGNATCATATTATAT
TATTTACTCCAGTGAAGGAGAATG
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