EY710992

Overview
NameEY710992
Unique NameEY710992
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length943
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY710992 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.768e-18
Identity = 50/124 (40.32%), Postives = 69/124 (55.65%), Query Frame = 3 
Query:  237 SLERKNPHQP--KRAGLRGDSDRLVWLPGDTPPEWIVGTMGGDRGFDPSELGKTTE*LPCHFDSLDPN*GKNDACELL*IVRASWPAPRDPLEPHTHPLRLHALKKWQLIHGQRDLGGVQAPVA 602
            S  +K P  P  K   ++ D DRLVW PG  PPEW+ G+M GDRGFDP  LGK  E L   FD LD N  KN A +++ I++ S      P +P+T    +   ++ +LIHG+  + G    +A
Sbjct:   34 SFGKKKPAPPPKKSRQVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIA 157
[Close]
BLAST of EY710992 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.952e-11
Identity = 37/108 (34.26%), Postives = 58/108 (53.70%), Query Frame = 3 
Query:  249 KNPHQPKRAGLRG-DSDRLVWLPGDTPPEWIVGTMGGDRGFDPSELGKTTE*LPCHFDSLDPN*GKNDACELL*IVRASWPAPRDPLEPHTHPLRLHALKKWQLIHGQ 569
            K    PK++  +   +DR +W PG   P+W+ G++ GD GFDP  LGK  E L    DSLD N  KN A +++     +  A   P +P++    +   ++ +LIHG+
Sbjct:   38 KKKAAPKKSAKKTVTTDRPLWYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKSTPFQPYSEVFGIQRFRECELIHGR 145
The following BLAST results are available for this feature:
BLAST of EY710992 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CB4C_ARATH1.768e-1840.32Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB4A_ARATH7.952e-1134.26Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-702-002-E01-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710992 ID=EY710992; Name=EY710992; organism=Citrus sinensis; type=EST; length=943bp
AAAACGCCCCCCCCCCGCTACCACCGAGATTAATAAAAANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCCACTCGTCCGCCCACGCGTCC
GACATATTCTATCCAATATCAAATTATCAGCGATGGCCACCACCACTACA
GCAGCAGCATCACGCTTTCTTCGGGACGAGAATTCACGGGGGCTGTCCTG
AAACAAAGATCCGGGAAAATTCCAAGCCAGGTTCCATCTTTGGAGAGAAA
GAATCCCCACCAGCCAAAAAGGGCAGGCCTACGCGGAGACTCCGACCGGC
TTGTCTGGTTACCCGGCGACACGCCGCCGGAATGGATCGTAGGGACAATG
GGGGGTGACCGTGGGTTCGACCCGTCGGAGCTGGGTAAAACAACAGAGTA
ACTGCCCTGTCATTTTGACTCCCTGGATCCTAACTGAGGCAAGAACGATG
CCTGCGAGCTTCTCTGAATTGTGCGTGCATCCTGGCCCGCTCCACGCGAC
CCGCTGGAACCCCACACCCACCCCCTTCGCCTCCACGCGCTTAAAAAATG
GCAACTCATTCATGGCCAGAGAGACCTGGGTGGTGTGCAAGCCCCCGTTG
CCGGTAGACCATAAACTGTTTCCTCGTTTGTGATGCTCGAATGTGGGGTT
GTTCCCTGGCCCACTTTATATGCCAACAAGATAAATTTTAGTGTGAGAAG
GGGCACCGCCTCGACACTCTGGCGCCGGGGACCCTCGAATTTAACGCGAC
GCCCAAGTTCTCCTAGTCAAGAAGCATACCCCGTGGGGGAAAGCTGACCC
CGGGGGTGGGCGCTCGCATCCCCCGATACTCGTAAATCTTAACATGCGTA
CATGTTCTCTGCGCCGTCAAACACGCATCGCTACTATCTGTGCGTCCCCT
CGCTCCCTCCCCTCCTGAGGTACCTCGTTCATGAGCGGACATA
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