EY710977

Overview
NameEY710977
Unique NameEY710977
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length916
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY710977_ssr470 microsatellite EY710977_ssr470:470..484. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY710977 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 198.364 bits (503), Expect = 4.934e-50
Identity = 105/193 (54.40%), Postives = 130/193 (67.36%), Query Frame = 2
Query:  272 KGQAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENEPTMAWKQXXXXXXXXXXXXXXXXVTCHVSIPEDFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAGDNLISKTERFLSQSVFKSLKDSIRALKSCENVVSSAESLXIIRRCIDSIALRASSADPALFGWXVTE 850
            +GQAWFCTTGLPSDIV+EV EMSFHLHKFPL+S+S  + + I E   E                         C + I  D PGG +TFE+VAKFCYGVK+EL++SNV  LRCA E+LEMTEE    NLIS+TE F +Q V KS KDSI+AL SC+ V+  A+ L I ++CI+S+A+RAS+ DP LFGW V E
Sbjct:   16 QGQAWFCTTGLPSDIVVEVGEMSFHLHKFPLLSRSGVMERRIAEASKE---------------------GDDKCLIEI-SDLPGGDKTFELVAKFCYGVKLELTASNVVYLRCAAEHLEMTEEHGEGNLISQTETFFNQVVLKSWKDSIKALHSCDEVLEYADELNITKKCIESLAMRAST-DPNLFGWPVVE 185          
BLAST of EY710977 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 2.078e-40
Identity = 88/206 (42.72%), Postives = 127/206 (61.65%), Query Frame = 2
Query:  272 KGQAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQEN-EPTMAWKQXXXXXXXXXXXXXXXXVTCHVSIPEDFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAGDNLISKTERFLSQSVFKSLKDSIRALKSCENVVSSAESLXIIRRCIDSIALRASSADPALFGWXVTEXXXSSASTRICG 886
            +GQ+WF  T +PSD+++++ +M+FHLHK+PL+S+S K+++LI E  + +PT                         + I +D PGG E FE+ +KFCYGV ++L+++N++ LRCA EYLEMTE+    NLI KTE FLS  V  S +DSI  LKSCE +   AE+L I+RRC +SIA +A S +P    W  T    S ++T   G
Sbjct:   41 RGQSWFVATDIPSDLLVKIGDMNFHLHKYPLLSRSGKMNRLIYESRDPDPT-------------------------ILILDDLPGGPEAFELASKFCYGVPVDLTATNISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKSCEKLSPWAENLQIVRRCSESIAWKACS-NPKGIRWAYTGKAPSPSTTNFAG 220          
BLAST of EY710977 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.034e-31
Identity = 75/204 (36.76%), Postives = 118/204 (57.84%), Query Frame = 2
Query:  272 KGQAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENEPTMAWKQXXXXXXXXXXXXXXXXVTCHVSIPE--DFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAGDNLISKTERFLSQSVFKSLKDSIRALKSCENVVSSAESLXIIRRCIDSIALRASSADPALFGWXVTEXXXSSASTR 877
            + ++W+  + +PSD++++V +++F+LHK+P++S+S ++ + + E                               V++ E  D PGG+ +FE+ A+F YG+ ++L+++N++ LRCA EYLEMTEE    NLI KTE FLS  V  S +DSI  LKSCE +   AE+L I+RRC +SIA +A  A+P    W  T     S   R
Sbjct:   39 RDRSWYVNSDIPSDLLVKVGDVNFYLHKYPMISRSGRMSRAVYESS-----------------AADEAEADAAAAVAVVEMGDLPGGAGSFELAARFSYGMAVDLTAANISGLRCAAEYLEMTEEMEEGNLIFKTEAFLSYVVLSSWRDSIAVLKSCEALSPWAENLQIVRRCSESIAWKA-CANPRGVRWAYTGAGAGSGGAR 224          
BLAST of EY710977 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.264e-29
Identity = 71/188 (37.77%), Postives = 109/188 (57.98%), Query Frame = 2
Query:  245 KMAAGKPTSKGQAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENEPTMAWKQXXXXXXXXXXXXXXXXVTCHVSIPEDFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAGDNLISKTERFLSQSVFKSLKDSIRALKSCENVVSSAESLXIIRRCIDSIALRA 808
            K++  K + +  + +    +PSDI IEV+  +F LHKFPL+S+S ++ +++ E  +      +                          + PGG+ETFE+ AKFCYG+  E++SSNVA L C  +YLEMTEE++ DNL S+TE +L   V K+L+  ++ LK  E ++  A+ L II RCID+IA +A
Sbjct:   22 KLSLAKSSRQSCSEWIFRDVPSDITIEVNGGNFALHKFPLVSRSGRIRRIVAEHRDSDISKVELL------------------------NLPGGAETFELAAKFCYGINFEITSSNVAQLFCVSDYLEMTEEYSKDNLASRTEEYLESIVCKNLEMCVQVLKQSEILLPLADELNIIGRCIDAIASKA 185          
BLAST of EY710977 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 3.112e-28
Identity = 65/175 (37.14%), Postives = 98/175 (56.00%), Query Frame = 2
Query:  284 WFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENEPTMAWKQXXXXXXXXXXXXXXXXVTCHVSIPEDFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAGDNLISKTERFLSQSVFKSLKDSIRALKSCENVVSSAESLXIIRRCIDSIALRA 808
            W  +  +P+D+V+EV E +F LHKF L++KS  + +LI E ++                            +++  D PGG E FE  AKFCYGV  E++  NVA L CA E+L+MT+++  +NL  +T+ FLSQ    SL  +I  LKSCE ++  +  L I+RRC+D +  +A
Sbjct:   24 WVFSQDIPTDVVVEVGEANFSLHKFMLVAKSNYIRKLIMESKDSDVT-----------------------RINL-SDIPGGPEIFEKAAKFCYGVNFEITVQNVAALHCAAEFLQMTDKYCDNNLAGRTQDFLSQVALSSLSGAIVVLKSCEILLPISRDLGIVRRCVDVVGAKA 174          
The following BLAST results are available for this feature:
BLAST of EY710977 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
Y1044_ARATH4.934e-5054.40BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
RPT3_ARATH2.078e-4042.72Root phototropism protein 3 OS=Arabidopsis thalian... [more]
NPH3_ORYSJ1.034e-3136.76Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
Y5880_ARATH1.264e-2937.77BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
RPT2_ARATH3.112e-2837.14Root phototropism protein 2 OS=Arabidopsis thalian... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-002-C09-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710977 ID=EY710977; Name=EY710977; organism=Citrus sinensis; type=EST; length=916bp
CCACGCGTCCGCCCACGCGTTCGTTTTAAATTAAAAAGAAGGAAAAAAAA
AAAAAAGAACTCTTAACTCTCTCATTCAGTCATTCTACCCCTCAGAAGTC
ATAAGCCTCCACCCTTGTTCTTTACTTTATTTCTTCTTTCTTTAGGGTTT
CATTATCCTATCCTTTTTCCATTTTTATGGATCTGAATTAGTTTCTGACC
AAAATCATTAGAGAAAGCAAGAAATTTGTGACCAAAATTGGGTAAAAATG
GCAGCCGGAAAGCCTACCTCCAAAGGGCAAGCATGGTTTTGTACTACTGG
TTTACCGAGCGACATTGTGATCGAAGTTGATGAAATGTCCTTTCATCTTC
ACAAGTTTCCTTTAATGTCAAAGAGTCGCAAGCTTCACCAACTGATAACG
GAGCAAGAAAATGAGCCCACCATGGCTTGGAAACAAGAAAAGGAAACTGA
AATCGAAGAGGAGGAGGGGGAAGAAGAAGAAGAAGTTACCTGCCACGTCA
GCATACCGGAGGACTTCCCAGGCGGATCGGAGACTTTCGAGATGGTGGCC
AAGTTCTGCTACGGCGTGAAGATGGAGCTGTCGTCTTCTAACGTAGCTCC
TCTCCGTTGCGCCGGAGAGTATCTCGAAATGACAGAAGAGTTCGCCGGGG
ACAACCTCATTTCCAAGACTGAGAGATTCCTCTCTCAATCCGTTTTCAAA
AGCTTAAAGGACTCCATTAGAGCCTTGAAATCCTGCGAAAACGTCGTCTC
GTCTGCGGAATCCCTANGCATTATTCGGAGATGTATTGATTCAATCGCTT
TACGAGCATCCTCCGCCGACCCTGCCTTGTTTGGCTGGNCNGTGACTGAA
NGCNGANGATCATCAGCTTCAACCAGAATTTGTGGACGAATTTTGAACAA
TTACGTAGAAGAACGG
back to top