EY710955

Overview
NameEY710955
Unique NameEY710955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13383 contig Csv1_Contig13383:1049..1973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY710955 vs. ExPASy Swiss-Prot
Match: COPB1_ORYSJ (Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica GN=Os11g0174000 PE=2 SV=1)

HSP 1 Score: 363.229 bits (931), Expect = 1.159e-99
Identity = 179/194 (92.27%), Postives = 187/194 (96.39%), Query Frame = 3
Query:   12 QNLCSELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGEDALVNVSIEKQTDGKLSGYIRIRSKTQGIALSLGDKITLKQKGGS 593
            QNLC ELATMGDLKLV+RPQNYTLAPESSKQI+ANIKVSSTETGVIFGNIVYETSNV+ER+VVVLNDIHIDIMDYISPA C D AFR MWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLT PSALDG+CGF+AANLYAKSVFGEDALVN+S+EKQ DGKLSGYIRIRSKTQGIALSLGDKITLKQKGGS
Sbjct:  759 QNLCLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFGNIVYETSNVMERSVVVLNDIHIDIMDYISPATCADVAFRNMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTPPSALDGECGFIAANLYAKSVFGEDALVNISVEKQADGKLSGYIRIRSKTQGIALSLGDKITLKQKGGS 952          
BLAST of EY710955 vs. ExPASy Swiss-Prot
Match: COPB2_ORYSJ (Coatomer subunit beta-2 OS=Oryza sativa subsp. japonica GN=Os01g0281400 PE=3 SV=1)

HSP 1 Score: 360.147 bits (923), Expect = 9.815e-99
Identity = 179/194 (92.27%), Postives = 186/194 (95.88%), Query Frame = 3
Query:   12 QNLCSELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGEDALVNVSIEKQTDGKLSGYIRIRSKTQGIALSLGDKITLKQKGGS 593
            QNLC ELATMGDLKLV+RPQNYTLAPESSKQI+ANIKVSSTETGVIFGNIVYETSNV+ER+VVVLNDIHIDIMDYISPA C D  FR MWAEFEWENKVAVNTVIQ+EKEFLDHIIKSTNMKCLT PSALDG+CGFLAANLYAKSVFGEDALVN+SIEKQ DGKLSGYIRIRSKTQGIALSLGDKITLKQKGGS
Sbjct:  757 QNLCLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFGNIVYETSNVMERSVVVLNDIHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQNEKEFLDHIIKSTNMKCLTPPSALDGECGFLAANLYAKSVFGEDALVNISIEKQFDGKLSGYIRIRSKTQGIALSLGDKITLKQKGGS 950          
BLAST of EY710955 vs. ExPASy Swiss-Prot
Match: COPB1_ARATH (Coatomer subunit beta-1 OS=Arabidopsis thaliana GN=At4g31480 PE=1 SV=2)

HSP 1 Score: 355.525 bits (911), Expect = 2.417e-97
Identity = 177/194 (91.24%), Postives = 186/194 (95.88%), Query Frame = 3
Query:   12 QNLCSELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGEDALVNVSIEKQTDGKLSGYIRIRSKTQGIALSLGDKITLKQKGGS 593
            QNLC ELATMGDLKLVERPQNY+LAPE S QIKANIKVSSTETGVIFGNIVYETSNV+ER VVVLNDIHIDIMDYISPAVC++ AFRTMWAEFEWENKVAVNT IQ+E+EFLDHIIKSTNMKCLTAPSA++G+CGFLAANLYAKSVFGEDALVNVSIEKQTDG LSGYIRIRSKTQGIALSLGDKITLKQKG S
Sbjct:  755 QNLCLELATMGDLKLVERPQNYSLAPERSMQIKANIKVSSTETGVIFGNIVYETSNVMERNVVVLNDIHIDIMDYISPAVCSEVAFRTMWAEFEWENKVAVNTTIQNEREFLDHIIKSTNMKCLTAPSAIEGECGFLAANLYAKSVFGEDALVNVSIEKQTDGALSGYIRIRSKTQGIALSLGDKITLKQKGSS 948          
BLAST of EY710955 vs. ExPASy Swiss-Prot
Match: COPB2_ARATH (Coatomer subunit beta-2 OS=Arabidopsis thaliana GN=At4g31490 PE=1 SV=2)

HSP 1 Score: 355.14 bits (910), Expect = 3.157e-97
Identity = 177/194 (91.24%), Postives = 186/194 (95.88%), Query Frame = 3
Query:   12 QNLCSELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVLERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGEDALVNVSIEKQTDGKLSGYIRIRSKTQGIALSLGDKITLKQKGGS 593
            QNLC ELATMGDLKLVERPQNY+LAPE S QIKANIKVSSTETGVIFGNIVYETSNV+ER VVVLNDIHIDIMDYISPAVC++ AFRTMWAEFEWENKVAVNT IQ+E+EFLDHIIKSTNMKCLTAPSA+ G+CGFLAANLYAKSVFGEDALVN+SIEKQTDG LSGYIRIRSKTQGIALSLGDKITLKQKGGS
Sbjct:  755 QNLCLELATMGDLKLVERPQNYSLAPERSMQIKANIKVSSTETGVIFGNIVYETSNVMERNVVVLNDIHIDIMDYISPAVCSEVAFRTMWAEFEWENKVAVNTTIQNEREFLDHIIKSTNMKCLTAPSAIAGECGFLAANLYAKSVFGEDALVNLSIEKQTDGTLSGYIRIRSKTQGIALSLGDKITLKQKGGS 948          
BLAST of EY710955 vs. ExPASy Swiss-Prot
Match: COPB_RAT (Coatomer subunit beta OS=Rattus norvegicus GN=Copb1 PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 6.860e-68
Identity = 130/196 (66.33%), Postives = 151/196 (77.04%), Query Frame = 3
Query:   12 QNLCSELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVL-ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGEDALVNVSIEKQT----DGKLSGYIRIRSKTQGIALSLGDKITLKQK 584
            QN   ELAT+GDLKLVE+P   TLAP     IKAN+KV+STE G+IFGNIVY+ S    +R  VVL+DIHIDIMDYI PA CTDA FR MWAEFEWENKV VNT + D  ++L HI+KSTNMKCLT   AL G CGF+AANLYA+S+FGEDAL NVSIEK      D  ++G+IRIR+K+QG+ALSLGDKI L QK
Sbjct:  754 QNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNVTDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQK 949          
BLAST of EY710955 vs. ExPASy Swiss-Prot
Match: COPB_MOUSE (Coatomer subunit beta OS=Mus musculus GN=Copb1 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.170e-67
Identity = 130/196 (66.33%), Postives = 151/196 (77.04%), Query Frame = 3
Query:   12 QNLCSELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVL-ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGEDALVNVSIEKQT----DGKLSGYIRIRSKTQGIALSLGDKITLKQK 584
            QN   ELAT+GDLKLVE+P   TLAP     IKAN+KV+STE G+IFGNIVY+ S    +R  VVL+DIHIDIMDYI PA CTDA FR MWAEFEWENKV VNT + D  ++L HI+KSTNMKCLT   AL G CGF+AANLYA+S+FGEDAL NVSIEK      D  ++G+IRIR+K+QG+ALSLGDKI L QK
Sbjct:  754 QNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNMTDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPVHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQK 949          
BLAST of EY710955 vs. ExPASy Swiss-Prot
Match: COPB_BOVIN (Coatomer subunit beta OS=Bos taurus GN=COPB1 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 1.528e-67
Identity = 131/199 (65.83%), Postives = 152/199 (76.38%), Query Frame = 3
Query:   12 QNLCSELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVL-ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGEDALVNVSIEKQ----TDGKLSGYIRIRSKTQGIALSLGDKITLKQKGGS 593
            QN   ELAT+GDLKLVE+P   TLAP     IKAN+KV+STE G+IFGNIVY+ S    +R  VVL+DIHIDIMDYI PA CTDA FR MWAEFEWENKV VNT I D  ++L HI+KSTNMKCLT   AL G CGF+AANLYA+S+FGEDAL NVSIEK      +  ++G+IRIR+K+QG+ALSLGDKI L QK  S
Sbjct:  754 QNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNIVDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPIQQGPEAPVTGHIRIRAKSQGMALSLGDKINLSQKKNS 952          
BLAST of EY710955 vs. ExPASy Swiss-Prot
Match: COPB_HUMAN (Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=1 SV=3)

HSP 1 Score: 256.144 bits (653), Expect = 1.996e-67
Identity = 130/196 (66.33%), Postives = 151/196 (77.04%), Query Frame = 3
Query:   12 QNLCSELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVL-ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGEDALVNVSIEKQ----TDGKLSGYIRIRSKTQGIALSLGDKITLKQK 584
            QN   ELAT+GDLKLVE+P   TLAP     IKAN+KV+STE G+IFGNIVY+ S    +R  VVL+DIHIDIMDYI PA CTDA FR MWAEFEWENKV VNT + D  ++L HI+KSTNMKCLT   AL G CGF+AANLYA+S+FGEDAL NVSIEK      D  ++G+IRIR+K+QG+ALSLGDKI L QK
Sbjct:  754 QNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNMVDLNDYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPIHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQK 949          
BLAST of EY710955 vs. ExPASy Swiss-Prot
Match: COPB_CHICK (Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 2.607e-67
Identity = 131/196 (66.84%), Postives = 151/196 (77.04%), Query Frame = 3
Query:   12 QNLCSELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVL-ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGEDALVNVSIEKQ----TDGKLSGYIRIRSKTQGIALSLGDKITLKQK 584
            QN   ELAT+GDLKLVE+P   TLAP     IKAN+KV+STE G+IFGNIVY+ S    +R  VVL+DIHIDIMDYI PA CTDA FR MWAEFEWENKV VNT I D  E+L HI+KSTNMKCLT   AL G CGF+AANLYA+S+FGEDAL NVSIEK      +  ++G+IRIR+K+QG+ALSLGDKI L QK
Sbjct:  754 QNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPASCTDAEFRQMWAEFEWENKVTVNTNIIDLNEYLQHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPIHLGPEAPVTGHIRIRAKSQGMALSLGDKINLSQK 949          
BLAST of EY710955 vs. ExPASy Swiss-Prot
Match: COPB_PONAB (Coatomer subunit beta OS=Pongo abelii GN=COPB1 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 4.447e-67
Identity = 130/196 (66.33%), Postives = 151/196 (77.04%), Query Frame = 3
Query:   12 QNLCSELATMGDLKLVERPQNYTLAPESSKQIKANIKVSSTETGVIFGNIVYETSNVL-ERTVVVLNDIHIDIMDYISPAVCTDAAFRTMWAEFEWENKVAVNTVIQDEKEFLDHIIKSTNMKCLTAPSALDGDCGFLAANLYAKSVFGEDALVNVSIEKQ----TDGKLSGYIRIRSKTQGIALSLGDKITLKQK 584
            QN   ELAT+GDLKLVE+P   TLAP     IKAN+KV+STE G+IFGNIVY+ S    +R  VVL+DIHIDIMDYI PA CTDA FR MWAEFEWENKV VNT + D  ++L HI+KSTNMKCLT   AL G CGF+AANLYA+S+FGEDAL NVSIEK      D  ++G+IRIR+K+QG+ALSLGDKI L QK
Sbjct:  754 QNCTLELATLGDLKLVEKPSPLTLAPHDFANIKANVKVASTENGIIFGNIVYDVSGAASDRNCVVLSDIHIDIMDYIQPATCTDAEFRQMWAEFEWENKVTVNTNMIDLNDYLRHILKSTNMKCLTPEKALSGYCGFMAANLYARSIFGEDALANVSIEKPIHQGPDAAVTGHIRIRAKSQGMALSLGDKINLSQK 949          
The following BLAST results are available for this feature:
BLAST of EY710955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COPB1_ORYSJ1.159e-9992.27Coatomer subunit beta-1 OS=Oryza sativa subsp. jap... [more]
COPB2_ORYSJ9.815e-9992.27Coatomer subunit beta-2 OS=Oryza sativa subsp. jap... [more]
COPB1_ARATH2.417e-9791.24Coatomer subunit beta-1 OS=Arabidopsis thaliana GN... [more]
COPB2_ARATH3.157e-9791.24Coatomer subunit beta-2 OS=Arabidopsis thaliana GN... [more]
COPB_RAT6.860e-6866.33Coatomer subunit beta OS=Rattus norvegicus GN=Copb... [more]
COPB_MOUSE1.170e-6766.33Coatomer subunit beta OS=Mus musculus GN=Copb1 PE=... [more]
COPB_BOVIN1.528e-6765.83Coatomer subunit beta OS=Bos taurus GN=COPB1 PE=2 ... [more]
COPB_HUMAN1.996e-6766.33Coatomer subunit beta OS=Homo sapiens GN=COPB1 PE=... [more]
COPB_CHICK2.607e-6766.84Coatomer subunit beta OS=Gallus gallus GN=COPB1 PE... [more]
COPB_PONAB4.447e-6766.33Coatomer subunit beta OS=Pongo abelii GN=COPB1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-002-A10-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710955 ID=EY710955; Name=EY710955; organism=Citrus sinensis; type=EST; length=923bp
CCACGCGTCCGCAGAATTTGTGCTCGGAGTTAGCTACTATGGGTGATCTT
AAGCTTGTTGAGCGTCCACAGAATTATACATTAGCACCTGAATCAAGCAA
GCAAATAAAGGCTAACATCAAGGTGTCCTCCACTGAGACTGGGGTCATTT
TTGGGAATATTGTTTATGAGACTTCAAATGTGCTTGAGCGAACAGTTGTT
GTCCTCAATGACATTCACATTGACATCATGGACTATATTTCTCCTGCTGT
TTGTACAGATGCAGCTTTTAGAACTATGTGGGCTGAGTTTGAATGGGAAA
ACAAGGTTGCTGTTAACACAGTAATTCAAGATGAGAAGGAATTCCTTGAT
CATATCATCAAATCAACCAACATGAAGTGCCTCACTGCACCGTCTGCACT
AGATGGTGATTGTGGGTTCCTGGCAGCAAACTTGTACGCCAAGAGTGTGT
TTGGTGAGGATGCTTTGGTAAATGTAAGCATTGAGAAGCAAACCGATGGC
AAGCTCAGTGGCTACATCAGAATAAGGAGCAAGACCCAAGGGATTGCCCT
TAGTCTTGGGGATAAGATCACTCTCAAGCAGAAGGGAGGCAGTTGATTTG
GAAAATGAGCATATCATTATTTTTGGAAACACAGGTGCTTTGCCTACAAA
TTAGAAGATTGTTCATCCCATTTTTGCTGTTCACTTTGTATCTAGGGCAT
TGAGGAAGTGACATTTATATTTGAGACGTATTTTACAGTGAAAAGTACCT
GAAAATGATGAAGTGTTCTTTTTTTTTTCGGTTCTTAACGATAGCATTTG
AGATGGGATTTTGCTGCAATTTTTCAGTAGTATTGAATTGAGCTCTATGC
TTTCATATTGGNAGTTTGGCTGTGTAGAAACCTTNGNTATAAATGNTCGC
GCATTGTGATCTCAAAGCGTTTG
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