EY710939

Overview
NameEY710939
Unique NameEY710939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length929
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFA_ARATH (Auxin response factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 3.356e-38
Identity = 84/129 (65.12%), Postives = 93/129 (72.09%), Query Frame = 3
Query:  105 SPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFIYTAEEVKKLSPKVKLPGNEELNAGKPDGEVVVNTDDRAS 491
            SPQESQSRQIRSCTKVHMQG AVGRA+DLTR +CYEDL KKLEEMFDI+G+L  STKKWQVVY              W++FC  VRKIFIYT EEVKKLSPK KL  N  +   K D E   NT+ R+S
Sbjct:  532 SPQESQSRQIRSCTKVHMQGSAVGRAIDLTRSECYEDLFKKLEEMFDIKGELLESTKKWQVVYTDDEDDMMMVGDDPWNEFCGMVRKIFIYTPEEVKKLSPKNKLAVNARMQL-KADAEENGNTEGRSS 659          
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFI_ORYSJ (Auxin response factor 9 OS=Oryza sativa subsp. japonica GN=ARF9 PE=2 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 4.393e-30
Identity = 73/137 (53.28%), Postives = 91/137 (66.42%), Query Frame = 3
Query:   90 SSERVSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFIYTAEEVKKLSPKVKLP--GNEELNAGKPDGEVVVNTDDRASI 494
            SSER SP ESQSRQ+RSCTKV MQG+AVGRAVDLT+ + Y DL  KLEEMFDI+GDLC + K+WQVVY              W +FCS V++I+IY+ EE K L+PK KLP  G+    +        V+ D+ AS+
Sbjct:  533 SSER-SPLESQSRQVRSCTKVIMQGMAVGRAVDLTKLNGYGDLRSKLEEMFDIQGDLCPTLKRWQVVYTDDEDDMMLVGDDPWDEFCSMVKRIYIYSYEEAKLLAPKSKLPVIGDTIKLSSMNSSHESVDLDNHASV 668          
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFG_ORYSJ (Auxin response factor 7 OS=Oryza sativa subsp. japonica GN=ARF7 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.847e-29
Identity = 65/111 (58.56%), Postives = 79/111 (71.17%), Query Frame = 3
Query:   90 SSERVSPQESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFIYTAEEVKKLSPKVKLP 422
            +S   SP E+QSRQ+RSCTKV MQG+AVGRAVDLTR   Y+DL  KLEEMFDI+G+L  S KKW+VVY              W +FCS V++I+IYT EE K+L+PK KLP
Sbjct:  533 ASSEPSPHETQSRQVRSCTKVIMQGMAVGRAVDLTRLHGYDDLRCKLEEMFDIQGELSASLKKWKVVYTDDEDDMMLVGDDPWPEFCSMVKRIYIYTYEEAKQLTPKSKLP 643          
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.371e-22
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 3
Query:  114 ESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFIYTAEEVKKLSP 407
            + Q+   RSC KVH QGIA+GR++DLT+F CY++L+ +L++MFD  G+L  S+K W VVY              W++FC+ V KIFIYT EEV+K++P
Sbjct:  706 KQQNGSSRSCKKVHKQGIALGRSIDLTKFTCYDELIAELDQMFDFNGELNSSSKNWMVVYTDNEGDMMLVGDDPWNEFCNMVHKIFIYTREEVQKMNP 803          
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.281e-21
Identity = 47/107 (43.93%), Postives = 70/107 (65.42%), Query Frame = 3
Query:  114 ESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFIYTAEEVKKLSPKVKLPGNEE 434
            ++Q    RSCTKVH QG+A+GR+VDL++F  Y++L  +L++MF+ +G+L  S K WQ+VY              W +FCS VRKI+IYT EEV+K++ K   P  ++
Sbjct:  685 KTQVASTRSCTKVHKQGVALGRSVDLSKFSNYDELKAELDKMFEFDGELVSSNKNWQIVYTDNEGDMMLVGDDPWEEFCSIVRKIYIYTKEEVQKMNSKSNAPRKDD 791          
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 4.868e-21
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 3
Query:  114 ESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFIYTAEEVKKLSPKVKLPGNEELNA 443
            +SQ    RSC KVH QGIA+GR+VDLT+F+ YE+L+ +L++MFD  G+L G  K+W VVY              W +FC  V KIFIYT EEV++++P      +E+ +A
Sbjct:  718 KSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHA 827          
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.868e-21
Identity = 50/110 (45.45%), Postives = 70/110 (63.64%), Query Frame = 3
Query:  114 ESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFIYTAEEVKKLSPKVKLPGNEELNA 443
            +SQ    RSC KVH QGIA+GR+VDLT+F+ YE+L+ +L++MFD  G+L G  K+W VVY              W +FC  V KIFIYT EEV++++P      +E+ +A
Sbjct:  718 KSQGVSTRSCKKVHKQGIALGRSVDLTKFNGYEELIAELDDMFDFNGELKGPKKEWMVVYTDNEGDMMLVGDDPWIEFCDMVHKIFIYTREEVQRMNPGTLNSRSEDSHA 827          
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 7.030e-20
Identity = 46/102 (45.10%), Postives = 67/102 (65.69%), Query Frame = 3
Query:  108 PQESQSR--QIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFIYTAEEVKKLSP 407
            P+++Q++    RSCTKVH QGIA+GR+VDL++F  YE+L+ +L+ +F+  G+L    K W +VY              W +FC  VRKIFIYT EEV+K++P
Sbjct:  722 PKDAQTKTNSSRSCTKVHKQGIALGRSVDLSKFQNYEELVAELDRLFEFNGELMAPKKDWLIVYTDEENDMMLVGDDPWQEFCCMVRKIFIYTKEEVRKMNP 823          
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFR_ARATH (Auxin response factor 18 OS=Arabidopsis thaliana GN=ARF18 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.857e-18
Identity = 47/108 (43.52%), Postives = 70/108 (64.81%), Query Frame = 3
Query:  111 QESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFIYTAEEVKKLSPKVKLPGNEE 434
            ++ + +  RS TKV MQGIAVGRAVDLT    Y++L+ +LEEMF+I+G L  +  KW VV+              W++FC   +KIFIY+++EVKK++ K+K+  + E
Sbjct:  481 EQKKQQTSRSRTKVQMQGIAVGRAVDLTLLKSYDELIDELEEMFEIQGQLL-ARDKWIVVFTDDEGDMMLAGDDPWNEFCKMAKKIFIYSSDEVKKMTTKLKISSSLE 587          
BLAST of EY710939 vs. ExPASy Swiss-Prot
Match: ARFD_ARATH (Auxin response factor 4 OS=Arabidopsis thaliana GN=ARF4 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.265e-17
Identity = 49/111 (44.14%), Postives = 66/111 (59.46%), Query Frame = 3
Query:   66 SFCKLWIXSSERVSP-QESQSRQIRSCTKVHMQGIAVGRAVDLTRFDCYEDLLKKLEEMFDIEGDLCGSTKKWQVVYFXXXXXXXXXXXXLWHDFCSGVRKIFIYTAEEVK 395
            S CKL+  S    +P  + QS   R CTKVH QG  VGRA+DL+R + Y+DLL +LE +F++EG L    K W+++Y              WHDFC+ V KI +YT EEV+
Sbjct:  641 SGCKLFGFSLPVETPASKPQSSSKRICTKVHKQGSQVGRAIDLSRLNGYDDLLMELERLFNMEGLLRDPEKGWRILYTDSENDMMVVGDDPWHDFCNVVWKIHLYTKEEVE 751          
The following BLAST results are available for this feature:
BLAST of EY710939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
ARFA_ARATH3.356e-3865.12Auxin response factor 1 OS=Arabidopsis thaliana GN... [more]
ARFI_ORYSJ4.393e-3053.28Auxin response factor 9 OS=Oryza sativa subsp. jap... [more]
ARFG_ORYSJ2.847e-2958.56Auxin response factor 7 OS=Oryza sativa subsp. jap... [more]
ARFX_ORYSJ3.371e-2247.96Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFD_ORYSJ1.281e-2143.93Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFW_ORYSJ4.868e-2145.45Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSI4.868e-2145.45Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFB_ARATH7.030e-2045.10Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFR_ARATH3.857e-1843.52Auxin response factor 18 OS=Arabidopsis thaliana G... [more]
ARFD_ARATH3.265e-1744.14Auxin response factor 4 OS=Arabidopsis thaliana GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-H05-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710939 ID=EY710939; Name=EY710939; organism=Citrus sinensis; type=EST; length=929bp
CCTTGCACAACCACGCGNCCGGACTCTGACTTACTTATAACGATTTATAT
TAATCGATCTGACGTTCCTTCTGTAAGTTGTGGATTANATCATCAGAGAG
GGTTTCTCCTCAGGAGTCTCAAAGCAGGCAGATTCGAAGTTGCACAAAGG
TTCATATGCAAGGAATTGCAGTTGGGAGGGCTGTTGATTTGACACGATTT
GACTGTTATGAAGACCTTCTCAAGAAACTGGAGGAGATGTTTGACATTGA
GGGAGACCTGTGTGGATCAACCAAGAAGTGGCAAGTGGTCTACTTTGATG
ATGAAGATGACATGATGATGGTTGGAGATGATCTATGGCATGACTTCTGT
AGCGGGGTGAGGAAAATTTTCATCTACACAGCAGAAGAAGTAAAGAAGCT
GTCGCCCAAGGTAAAACTTCCAGGTAACGAGGAGCTCAATGCAGGCAAGC
CAGATGGTGAAGTGGTTGTCAACACTGATGATCGGGCATCTATTGTTGGA
CCTGGGGGTGCTGATATGCCTATGCAGTAAGATATCAGCAGAGTATGGAG
GGAATGGTAAGGTGACTGCCCTTTAGATTCGGCCTAGTAGAAAAACATGA
GGGGTAGAGAGGAGGAGGCCTTATAGTCGACATGGCGTCCAAAGAGGGAC
TTTGCCTAAAGCCTAAAAGTGTGGGTGGTAAGAAGTTTTCATTTTGGCTT
TGCCAAGGGAATACAAAAAAGGTTTGGTTATTCAAAATCCCGGGGAACGG
GAAAGTTGTTACGTCATATCGGCGGCCCAGCTTATGGGAAGGAACTGGGG
TCCTCCCATTTTGGGTGGCGGCGTGTTTCCTCTTTTCGAAGAAAGCGCGA
AAAAGAGGGGGGGGAAGTTTTCCCGTGGGAGAAGGAAATAGAGGGGGCCC
CCCGGGTGGGGCCGAGAATCGACCCCCCT
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