EY710938

Overview
NameEY710938
Unique NameEY710938
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length917
Libraries
Library NameType
Sweet orange fruit, development stadium (3 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710938 vs. ExPASy Swiss-Prot
Match: HYOU1_XENTR (Hypoxia up-regulated protein 1 (Fragment) OS=Xenopus tropicalis GN=hyou1 PE=2 SV=2)

HSP 1 Score: 58.9214 bits (141), Expect = 3.450e-11
Identity = 35/96 (36.46%), Postives = 54/96 (56.25%), Query Frame = 2
Query:  278 DVRKSPKAMAELKKQVN*TKIILCTNTMEPISVKSLHDDRGFRSSITCQKLEEL-------------YELMHSGLKMDEIYAVEFIGGATVVPKLQ 526
            DVR++ +AM++L K+ N  K IL  N      ++ L DD  F++ +T Q+LE+L             + L  + +KM+EI  V  +GGAT VPK+Q
Sbjct:  286 DVRENQRAMSKLLKEANRVKTILSANNDHMAQIEGLMDDIDFKAKVTRQELEDLCADLFNRVSAPVQHALSSAEMKMEEIDQVILVGGATRVPKVQ 381          

HSP 2 Score: 30.4166 bits (67), Expect = 3.450e-11
Identity = 13/32 (40.62%), Postives = 22/32 (68.75%), Query Frame = 3
Query:  168 LQVKDIRWDAELGSQNMELRLVEYFAEEFNKQ 263
            LQ++ + +D  LG   M+LRL ++ A+ FN+Q
Sbjct:  249 LQIRGVGFDRTLGGIEMDLRLRDHLAKLFNEQ 280          
BLAST of EY710938 vs. ExPASy Swiss-Prot
Match: HYOU1_CRIGR (Hypoxia up-regulated protein 1 OS=Cricetulus griseus GN=HYOU1 PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 5.741e-11
Identity = 33/96 (34.38%), Postives = 51/96 (53.12%), Query Frame = 2
Query:  278 DVRKSPKAMAELKKQVN*TKIILCTNTMEPISVKSLHDDRGFRSSITCQKLEEL-------------YELMHSGLKMDEIYAVEFIGGATVVPKLQ 526
            DVR++P+AMA+L ++ N  K +L  N      ++ L DD  F++ +T  + EEL               L  + + +DEI  V  +GGAT VPK+Q
Sbjct:  298 DVRENPRAMAKLLREANRLKTVLSANADHMAQIEGLMDDVDFKAKVTRVESEELCADLFERVPGPVQQALQSAEMSLDEIEQVILVGGATRVPKVQ 393          

HSP 2 Score: 33.113 bits (74), Expect = 5.741e-11
Identity = 15/32 (46.88%), Postives = 22/32 (68.75%), Query Frame = 3
Query:  168 LQVKDIRWDAELGSQNMELRLVEYFAEEFNKQ 263
            LQ++ + +D  LG   MELRL E+ A+ FN+Q
Sbjct:  259 LQIRGVGFDRTLGGLEMELRLREHLAKLFNEQ 290          
BLAST of EY710938 vs. ExPASy Swiss-Prot
Match: HYOU1_CHICK (Hypoxia up-regulated protein 1 OS=Gallus gallus GN=HYOU1 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 7.450e-11
Identity = 33/96 (34.38%), Postives = 51/96 (53.12%), Query Frame = 2
Query:  278 DVRKSPKAMAELKKQVN*TKIILCTNTMEPISVKSLHDDRGFRSSITCQKLEEL-------------YELMHSGLKMDEIYAVEFIGGATVVPKLQ 526
            DVRK+P+AMA+L K+ N  K +L  N      ++ L DD  F++ ++ Q+ E+L               L  + + +D I  V  +GGAT VPK+Q
Sbjct:  290 DVRKNPRAMAKLLKEANRLKTVLSANADHMAQIEGLLDDIDFKAKVSRQEFEDLCSDLFQRVPGPVQQALSSAEMNLDGIDQVILVGGATRVPKVQ 385          

HSP 2 Score: 33.113 bits (74), Expect = 7.450e-11
Identity = 16/32 (50.00%), Postives = 21/32 (65.62%), Query Frame = 3
Query:  168 LQVKDIRWDAELGSQNMELRLVEYFAEEFNKQ 263
            LQ++ I +D  LG   MELRL +Y A+ FN Q
Sbjct:  254 LQIQGIGFDRTLGGLEMELRLRDYLAKLFNDQ 285          
BLAST of EY710938 vs. ExPASy Swiss-Prot
Match: HYOU1_MOUSE (Hypoxia up-regulated protein 1 OS=Mus musculus GN=Hyou1 PE=1 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 7.450e-11
Identity = 32/96 (33.33%), Postives = 51/96 (53.12%), Query Frame = 2
Query:  278 DVRKSPKAMAELKKQVN*TKIILCTNTMEPISVKSLHDDRGFRSSITCQKLEEL-------------YELMHSGLKMDEIYAVEFIGGATVVPKLQ 526
            DVR++P+AMA+L ++ N  K +L  N      ++ L DD  F++ +T  + EEL               L  + + +D+I  V  +GGAT VPK+Q
Sbjct:  298 DVRENPRAMAKLLREANRLKTVLSANADHMAQIEGLMDDVDFKAKVTRVEFEELCADLFDRVPGPVQQALQSAEMSLDQIEQVILVGGATRVPKVQ 393          

HSP 2 Score: 33.113 bits (74), Expect = 7.450e-11
Identity = 15/32 (46.88%), Postives = 22/32 (68.75%), Query Frame = 3
Query:  168 LQVKDIRWDAELGSQNMELRLVEYFAEEFNKQ 263
            LQ++ + +D  LG   MELRL E+ A+ FN+Q
Sbjct:  259 LQIRGVGFDRTLGGLEMELRLREHLAKLFNEQ 290          
The following BLAST results are available for this feature:
BLAST of EY710938 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
HYOU1_XENTR3.450e-1136.46Hypoxia up-regulated protein 1 (Fragment) OS=Xenop... [more]
HYOU1_CRIGR5.741e-1134.38Hypoxia up-regulated protein 1 OS=Cricetulus grise... [more]
HYOU1_CHICK7.450e-1134.38Hypoxia up-regulated protein 1 OS=Gallus gallus GN... [more]
HYOU1_MOUSE7.450e-1133.33Hypoxia up-regulated protein 1 OS=Mus musculus GN=... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-702-001-H04-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710938 ID=EY710938; Name=EY710938; organism=Citrus sinensis; type=EST; length=917bp
TACGTCAACCCACGTGTCCGCCCACGCGTCTGGCATTGAGTGGTCTTTAT
TCCCATAGCTTTATTTTTTTCTCGCTTCATCCGTGCTTTATTCAATCTTT
ATGTGTCGCTTGTGTTATGTTCCTGCGTATCTAATTACTTTTAGATGCTA
GTTGATATTTGACAATTTTGCAGGTTAAGGATATTAGATGGGACGCAGAA
CTTGGCAGTCAGAACATGGAATTACGGTTGGTTGAATACTTTGCAGAAGA
GTTTAATAAACAAGTTGGTAATTGGGTGATGTGAGGAAATCTCCCAAGGC
CATGGCTGAACTGAAGAAGCAAGTTAATTAAACAAAAATAATTCTTTGTA
CGAACACAATGGAACCAATATCAGTTAAATCTCTCCATGATGATAGGGGC
TTCAGGAGCAGCATTACCTGTCAAAAGCTCGAAGAGCTCTATGAACTTAT
GCATTCAGGGTTGAAAATGGACGAGATATATGCAGTGGAGTTCATTGGAG
GAGCTACTGTAGTGCCAAAGTTGCAGGTTTGAACTATCTGCTTTGTTTTG
GTAGTTAACCCGAGTATTAAATTCTTGAGGCATGTAAGGTAGTAGACTTT
AGCCAATTCAAGAGTAGAATATAATATGTTTACTTGTGTTGATCTTAATC
TTTAATCACTTAGCCTGAATAGGAAATAATTTTTTTATATTTGCTCTGCA
ATGATGTTATTCAGGGTTAATAGCTTTGTTACTCTTTTCCGCCAGATTCT
TGATCTCAAAAGAACTTTATTTTGAATATCTGCATAAAGAATTCTCATTT
ATACCATCAGGGATTTTCATTTTTTCTCCTAAATTTAAAGGGTTGAAAAC
TGGAGGCTAACCACCATGCATTTTATCTGGCGGATGTTGAGCTATTTTTT
GTGCAATCTGAAAATTG
back to top