EY686165
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFC4_HUMAN (Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2) HSP 1 Score: 190.66 bits (483), Expect = 9.690e-48 Identity = 97/181 (53.59%), Postives = 124/181 (68.51%), Query Frame = 3 Query: 9 SGQRPWGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEGLFPARTPGDFDLSNKESNTVVAEGYRASQLHPQTHD 548 SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++ R+L I +E + + E ++ L +S+GDLR+AIT+LQ A RL G IT K + ++GVIP E ++G+F A G FD ++ EG+ A+QL Q HD Sbjct: 132 SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHD 312
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFC4_MOUSE (Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1) HSP 1 Score: 189.889 bits (481), Expect = 1.653e-47 Identity = 97/181 (53.59%), Postives = 125/181 (69.06%), Query Frame = 3 Query: 9 SGQRPWGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS-VSGVIPPEVVEGLFPARTPGDFDLSNKESNTVVAEGYRASQLHPQTHD 548 SG R G PCPP+KI+ILDEADSMT AQ ALRRTME SK TRF ICNY+SRIIEPL SRC+KFRFKPLS+++ R+L I +E + + E ++ L IS+GDLR+AIT+LQ A RL G S+D+I+ ++GVIP ++G+F A G FD ++ EG+ A+QL Q HD Sbjct: 132 SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHD 312
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFC2_YEAST (Replication factor C subunit 2 OS=Saccharomyces cerevisiae GN=RFC2 PE=1 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 2.556e-40 Identity = 89/178 (50.00%), Postives = 114/178 (64.04%), Query Frame = 3 Query: 30 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSGVIPPEVVEGLFPARTPGDFDLSNKESNTVVAEGYRASQLHPQTHD 548 YPCPPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF ICNY++RII+PLASRC+KFRFK L R+ I +E + D L + IS GDLRR IT LQ A++ G +ITS + ++GV+P +++ + GDFD K NT + G+ A+ + Q H+ Sbjct: 129 YPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHE 306
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFC2_SCHPO (Replication factor C subunit 2 OS=Schizosaccharomyces pombe GN=rfc2 PE=1 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 9.712e-40 Identity = 82/175 (46.86%), Postives = 115/175 (65.71%), Query Frame = 3 Query: 27 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEGLFPARTPGDFDLSNKESNTVVAEGYRASQLHPQTHD 548 GYPCPP+KIIILDEADSMT+DAQ ALRRTME+Y+++TRF ICNY++RII+PL+SRC+K+RFKPL E M R+ I ++ ++++ ++ L S GD+R+AIT+LQ AA L G+ IT + ++G +P ++ L + S V AEGY + Q HD Sbjct: 118 GYPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAGAVPYNIIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHD 292
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFC4_DICDI (Probable replication factor C subunit 4 OS=Dictyostelium discoideum GN=rfc4 PE=3 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 1.074e-38 Identity = 80/172 (46.51%), Postives = 109/172 (63.37%), Query Frame = 3 Query: 33 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFPARTPGDFDLSNKESNTVVAEGYRASQLHPQTHD 548 P +K+IILDEADSMT DAQ ALRRT+ET SK TRF +CNYISRII+PLASRCAKFRFKPL R+ I +EG+ + + +S GD+R+AITYLQ A R F + I+ + +++G +PP++++ L FD +++A+GY SQ+ Q D Sbjct: 113 PGATFKLIILDEADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLIKQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFD 284
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFC2_PHANO (Replication factor C subunit 2 OS=Phaeosphaeria nodorum GN=RFC2 PE=3 SV=1) HSP 1 Score: 150.599 bits (379), Expect = 1.111e-35 Identity = 91/208 (43.75%), Postives = 120/208 (57.69%), Query Frame = 3 Query: 30 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT-----------------------SKDLIS------VSGVIPPEVV----EGLFPARTPGDFDLSN--KESNTVVAEGYRASQLHPQTHD 548 Y CPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF +CNY++RII+PLASRC+KFRFK L + RV I E + LDA L ++ GDLR+AIT+LQ AARL G++ T SK IS ++GVIP + + LFP + K ++AEG+ ASQ Q ++ Sbjct: 153 YSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAARLVGATQTAGRKKKVVVDDEDEMDIDPPSAPSKTTISLEQIAEIAGVIPAPTLASFSDALFPKSAAKSIRYNEIAKVVENMIAEGWSASQTVSQLYE 360
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFCS_ARCFU (Replication factor C small subunit OS=Archaeoglobus fulgidus GN=rfcS PE=1 SV=1) HSP 1 Score: 139.428 bits (350), Expect = 2.562e-32 Identity = 71/143 (49.65%), Postives = 92/143 (64.34%), Query Frame = 3 Query: 42 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFPARTPGDF 470 P+KII LDEAD++T DAQ ALRRTME YSK RF CNY+SRIIEP+ SRCA FRFKP+ +E M R+L IC +EG+ + + L L IS GD R+AI LQGAA + G + + + ++ PE + L G+F Sbjct: 102 PFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI-GEVVDADTIYQITATARPEEMTELIQTALKGNF 243
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFCS_AERPE (Replication factor C small subunit OS=Aeropyrum pernix GN=rfcS PE=3 SV=3) HSP 1 Score: 132.494 bits (332), Expect = 3.132e-30 Identity = 72/169 (42.60%), Postives = 101/169 (59.76%), Query Frame = 3 Query: 42 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFPARTPGDFDLSNKESNTVVAE-GYRASQLHPQTH 545 P+KI++LDEAD+MT DAQ ALRR ME YS VTRF I NY S+II+P+ SRCA FRF+PLS++ + R+ +I EG++ + EAL + IS+GD+R+AI LQ A+ L +T + V G+ P V + GDF + ++ E G + Q H Sbjct: 104 PFKIVLLDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGVDYEEEALDAIYEISEGDMRKAINVLQAASYL--GKVTVDAVYRVVGMAKPREVREMLATALKGDFTAARSLLRKIMIEYGMSGEDVARQIH 270
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFCS_STAMF (Replication factor C small subunit OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1) HSP 1 Score: 130.568 bits (327), Expect = 1.190e-29 Identity = 72/169 (42.60%), Postives = 98/169 (57.99%), Query Frame = 3 Query: 42 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFPARTPGDF-DLSNKESNTVVAEGYRASQLHPQTH 545 P+KI++LDEAD+MT DAQ ALRR ME Y+ TRF I NY S+IIEP+ SRCA FRF PL +E + SR+ I +E + +D EAL + +S+GD+RRAI LQ AA L +T + V G+ P + + G+F D K ++ G + Q H Sbjct: 108 PFKIVLLDEADNMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKVEIDEEALEAIHDLSEGDMRRAINILQAAAAL--GKVTVDSVYKVVGLAHPREIRQMIQLALAGNFNDAREKLRELMINYGLSGVDVIKQVH 274
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFCS_PYRKO (Replication factor C small subunit OS=Pyrococcus kodakaraensis GN=rfcS PE=1 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 2.030e-29 Identity = 68/142 (47.89%), Postives = 92/142 (64.79%), Query Frame = 3 Query: 45 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFPARTPGDF 470 +KII LDEAD++T+DAQ ALRRTME +S RF CNY S+IIEP+ SRCA FRF+PL +E ++ R+ +I EGL L E L + +++GDLRRAI LQ AA L + IT +++ V+ PE V + G+F Sbjct: 651 FKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRIRYIAENEGLELTEEGLQAILYVAEGDLRRAINVLQAAAAL-DTKITDENVFLVASRARPEDVREMMTLALEGNF 791 The following BLAST results are available for this feature:
BLAST of EY686165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >EY686165 ID=EY686165; Name=EY686165; organism=Citrus sinensis; type=EST; length=885bpback to top |