EY686165

Overview
NameEY686165
Unique NameEY686165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFC4_HUMAN (Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 9.690e-48
Identity = 97/181 (53.59%), Postives = 124/181 (68.51%), Query Frame = 3
Query:    9 SGQRPWGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEGLFPARTPGDFDLSNKESNTVVAEGYRASQLHPQTHD 548
            SG R  G PCPP+KI+ILDEADSMT  AQ ALRRTME  SK TRF  ICNY+SRIIEPL SRC+KFRFKPLS+++   R+L I  +E + +  E ++ L  +S+GDLR+AIT+LQ A RL  G  IT K +  ++GVIP E ++G+F A   G FD        ++ EG+ A+QL  Q HD
Sbjct:  132 SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHD 312          
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFC4_MOUSE (Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.653e-47
Identity = 97/181 (53.59%), Postives = 125/181 (69.06%), Query Frame = 3
Query:    9 SGQRPWGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLIS-VSGVIPPEVVEGLFPARTPGDFDLSNKESNTVVAEGYRASQLHPQTHD 548
            SG R  G PCPP+KI+ILDEADSMT  AQ ALRRTME  SK TRF  ICNY+SRIIEPL SRC+KFRFKPLS+++   R+L I  +E + +  E ++ L  IS+GDLR+AIT+LQ A RL G    S+D+I+ ++GVIP   ++G+F A   G FD        ++ EG+ A+QL  Q HD
Sbjct:  132 SGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLVNQLHD 312          
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFC2_YEAST (Replication factor C subunit 2 OS=Saccharomyces cerevisiae GN=RFC2 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 2.556e-40
Identity = 89/178 (50.00%), Postives = 114/178 (64.04%), Query Frame = 3
Query:   30 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-----GSSITSKDLISVSGVIPPEVVEGLFPARTPGDFDLSNKESNTVVAEGYRASQLHPQTHD 548
            YPCPPYKIIILDEADSMT DAQ+ALRRTMETYS VTRF  ICNY++RII+PLASRC+KFRFK L       R+  I  +E +  D   L  +  IS GDLRR IT LQ A++       G +ITS  +  ++GV+P +++  +      GDFD   K  NT +  G+ A+ +  Q H+
Sbjct:  129 YPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHE 306          
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFC2_SCHPO (Replication factor C subunit 2 OS=Schizosaccharomyces pombe GN=rfc2 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 9.712e-40
Identity = 82/175 (46.86%), Postives = 115/175 (65.71%), Query Frame = 3
Query:   27 GYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLF-GSSITSKDLISVSGVIPPEVVEGLFPARTPGDFDLSNKESNTVVAEGYRASQLHPQTHD 548
            GYPCPP+KIIILDEADSMT+DAQ ALRRTME+Y+++TRF  ICNY++RII+PL+SRC+K+RFKPL  E M  R+  I  ++ ++++   ++ L   S GD+R+AIT+LQ AA L  G+ IT   +  ++G +P  ++  L       +       S  V AEGY    +  Q HD
Sbjct:  118 GYPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITISSVEELAGAVPYNIIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHD 292          
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFC4_DICDI (Probable replication factor C subunit 4 OS=Dictyostelium discoideum GN=rfc4 PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.074e-38
Identity = 80/172 (46.51%), Postives = 109/172 (63.37%), Query Frame = 3
Query:   33 PCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFPARTPGDFDLSNKESNTVVAEGYRASQLHPQTHD 548
            P   +K+IILDEADSMT DAQ ALRRT+ET SK TRF  +CNYISRII+PLASRCAKFRFKPL       R+  I  +EG+  +      +  +S GD+R+AITYLQ A R F + I+   + +++G +PP++++ L        FD       +++A+GY  SQ+  Q  D
Sbjct:  113 PGATFKLIILDEADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIAGSLPPQLIKQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFD 284          
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFC2_PHANO (Replication factor C subunit 2 OS=Phaeosphaeria nodorum GN=RFC2 PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 1.111e-35
Identity = 91/208 (43.75%), Postives = 120/208 (57.69%), Query Frame = 3
Query:   30 YPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSIT-----------------------SKDLIS------VSGVIPPEVV----EGLFPARTPGDFDLSN--KESNTVVAEGYRASQLHPQTHD 548
            Y CPP+KII+LDEADSMT+DAQ+ALRRTMETYS++TRF  +CNY++RII+PLASRC+KFRFK L +     RV  I   E + LDA     L  ++ GDLR+AIT+LQ AARL G++ T                       SK  IS      ++GVIP   +    + LFP         +   K    ++AEG+ ASQ   Q ++
Sbjct:  153 YSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAARLVGATQTAGRKKKVVVDDEDEMDIDPPSAPSKTTISLEQIAEIAGVIPAPTLASFSDALFPKSAAKSIRYNEIAKVVENMIAEGWSASQTVSQLYE 360          
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFCS_ARCFU (Replication factor C small subunit OS=Archaeoglobus fulgidus GN=rfcS PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.562e-32
Identity = 71/143 (49.65%), Postives = 92/143 (64.34%), Query Frame = 3
Query:   42 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFPARTPGDF 470
            P+KII LDEAD++T DAQ ALRRTME YSK  RF   CNY+SRIIEP+ SRCA FRFKP+ +E M  R+L IC +EG+ +  + L  L  IS GD R+AI  LQGAA + G  + +  +  ++    PE +  L      G+F
Sbjct:  102 PFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI-GEVVDADTIYQITATARPEEMTELIQTALKGNF 243          
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFCS_AERPE (Replication factor C small subunit OS=Aeropyrum pernix GN=rfcS PE=3 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 3.132e-30
Identity = 72/169 (42.60%), Postives = 101/169 (59.76%), Query Frame = 3
Query:   42 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFPARTPGDFDLSNKESNTVVAE-GYRASQLHPQTH 545
            P+KI++LDEAD+MT DAQ ALRR ME YS VTRF  I NY S+II+P+ SRCA FRF+PLS++ +  R+ +I   EG++ + EAL  +  IS+GD+R+AI  LQ A+ L    +T   +  V G+  P  V  +      GDF  +      ++ E G     +  Q H
Sbjct:  104 PFKIVLLDEADNMTSDAQQALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGVDYEEEALDAIYEISEGDMRKAINVLQAASYL--GKVTVDAVYRVVGMAKPREVREMLATALKGDFTAARSLLRKIMIEYGMSGEDVARQIH 270          
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFCS_STAMF (Replication factor C small subunit OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.190e-29
Identity = 72/169 (42.60%), Postives = 98/169 (57.99%), Query Frame = 3
Query:   42 PYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFPARTPGDF-DLSNKESNTVVAEGYRASQLHPQTH 545
            P+KI++LDEAD+MT DAQ ALRR ME Y+  TRF  I NY S+IIEP+ SRCA FRF PL +E + SR+  I  +E + +D EAL  +  +S+GD+RRAI  LQ AA L    +T   +  V G+  P  +  +      G+F D   K    ++  G     +  Q H
Sbjct:  108 PFKIVLLDEADNMTADAQQALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKVEIDEEALEAIHDLSEGDMRRAINILQAAAAL--GKVTVDSVYKVVGLAHPREIRQMIQLALAGNFNDAREKLRELMINYGLSGVDVIKQVH 274          
BLAST of EY686165 vs. ExPASy Swiss-Prot
Match: RFCS_PYRKO (Replication factor C small subunit OS=Pyrococcus kodakaraensis GN=rfcS PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.030e-29
Identity = 68/142 (47.89%), Postives = 92/142 (64.79%), Query Frame = 3
Query:   45 YKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRVLHICNEEGLNLDAEALSTLSSISQGDLRRAITYLQGAARLFGSSITSKDLISVSGVIPPEVVEGLFPARTPGDF 470
            +KII LDEAD++T+DAQ ALRRTME +S   RF   CNY S+IIEP+ SRCA FRF+PL +E ++ R+ +I   EGL L  E L  +  +++GDLRRAI  LQ AA L  + IT +++  V+    PE V  +      G+F
Sbjct:  651 FKIIFLDEADALTQDAQQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRIRYIAENEGLELTEEGLQAILYVAEGDLRRAINVLQAAAAL-DTKITDENVFLVASRARPEDVREMMTLALEGNF 791          
The following BLAST results are available for this feature:
BLAST of EY686165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RFC4_HUMAN9.690e-4853.59Replication factor C subunit 4 OS=Homo sapiens GN=... [more]
RFC4_MOUSE1.653e-4753.59Replication factor C subunit 4 OS=Mus musculus GN=... [more]
RFC2_YEAST2.556e-4050.00Replication factor C subunit 2 OS=Saccharomyces ce... [more]
RFC2_SCHPO9.712e-4046.86Replication factor C subunit 2 OS=Schizosaccharomy... [more]
RFC4_DICDI1.074e-3846.51Probable replication factor C subunit 4 OS=Dictyos... [more]
RFC2_PHANO1.111e-3543.75Replication factor C subunit 2 OS=Phaeosphaeria no... [more]
RFCS_ARCFU2.562e-3249.65Replication factor C small subunit OS=Archaeoglobu... [more]
RFCS_AERPE3.132e-3042.60Replication factor C small subunit OS=Aeropyrum pe... [more]
RFCS_STAMF1.190e-2942.60Replication factor C small subunit OS=Staphylother... [more]
RFCS_PYRKO2.030e-2947.89Replication factor C small subunit OS=Pyrococcus k... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-035-D03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY686165 ID=EY686165; Name=EY686165; organism=Citrus sinensis; type=EST; length=885bp
CTGTAGGCTCTGGTCAGCGACCTTGGGGTTATCCTTGTCCCCCATATAAG
ATTATTATTTTAGATGAAGCAGATTCCATGACTGAAGATGCTCAGAATGC
TCTGAGACGTACTATGGAAACTTACTCCAAAGTCACAAGATTCTTCTTTA
TATGCAATTACATAAGCAGGATAATAGAGCCTCTTGCTTCAAGATGTGCA
AAGTTCAGGTTCAAGCCACTTTCTGAGGAAGTTATGAGTAGCCGTGTATT
GCACATTTGTAATGAAGAAGGACTCAATCTAGATGCAGAGGCTTTATCAA
CCTTAAGTTCTATATCACAAGGTGATCTCCGCAGGGCTATTACATACTTG
CAGGGAGCTGCTCGATTATTTGGATCATCAATAACTTCCAAGGACCTAAT
TAGTGTGTCTGGTGTTATCCCACCGGAGGTAGTGGAGGGGCTTTTCCCGG
CGCGCACACCTGGTGACTTTGATTTAAGCAATAAGGAAAGTAACACCGTC
GTTGCGGAGGGATATCGGGCCTCTCAGCTTCATCCCCAAACACATGATGG
GGGTGGAGGAAACCAACAATTCGCCTCATGGCCAACCCAGGTGCAACAAT
CCCGGGAGGGTGGGCGCAGGAAACCCTACCCGCCGTGGTGCGGGCCTCGC
AAACGAGGCCTTGCAGCTTCTTGACCTGGCCCACAAACCCGACAACAACC
ACACCTCACCCCCAGAGACGCAGCGTCTTGAAAGACGCGGGAAGGACCGC
AACGACACGGCGATCCCAGACACCGCCATGCCACCGACCCCGCAACCGAC
CTACCGCCTATCGCCCTACAGGCGCCGCCCACTCACGCACGAAGCTCTGC
CCCAGCAGCCAGGAGGCACGCCCCCCACCGAGCGC
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