EY710670

Overview
NameEY710670
Unique NameEY710670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1043
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS_FAGCR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Fagus crenata GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.396e-45
Identity = 97/146 (66.44%), Postives = 111/146 (76.03%), Query Frame = 1
Query:    1 ASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELE------KGMGVP*APQVTRILRWTLLDNVESWPMYGCTDAT 420
            ASSMISSATVAT +RA+ AQA+MVAPFTGLKS++AFPAT+K+NNDITS+ASNGGRVQCMKVWPP GL+KFETLSYLPPLS E+L K+I YLI  GWIPCLEFELE      +    P        + W L       PM+GCTDAT
Sbjct:    2 ASSMISSATVATVSRATPAQATMVAPFTGLKSTAAFPATRKSNNDITSLASNGGRVQCMKVWPPLGLQKFETLSYLPPLSIESLAKQIEYLILKGWIPCLEFELEHPFVYRENNRSPGYYDGRYWVMWKL-------PMFGCTDAT 140          
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS_GOSHI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Gossypium hirsutum GN=RBCS PE=3 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 2.849e-44
Identity = 101/184 (54.89%), Postives = 122/184 (66.30%), Query Frame = 1
Query:    1 ASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGM---GVP*APQVTRILRWTLLDNVESWPMYGCTDATPGFEGGWGRVQKENPLSFVRNYRN*KQRRPGCRGSVSLLPK 543
            ASSMISSAT+AT N +S AQA+MVAPFTGLKS+SAFP T+K NNDITS+ASNGGRVQCM+VWPP G KKFETLSYLP L+   L KE++YL+RS WIPCLEFELE+G         P       WT+       PM+GCTD+    E      +KE P +F+R       R+  C   ++  PK
Sbjct:    2 ASSMISSATIATVNCSSPAQANMVAPFTGLKSASAFPVTRKANNDITSLASNGGRVQCMQVWPPLGKKKFETLSYLPDLTPVQLAKEVDYLLRSKWIPCLEFELEEGFVHRKYSSLPTYYDGRYWTMW----KLPMFGCTDSAQVLE-ELENCKKEYPNAFIRIIGFDNVRQVQCISFIAYKPK 180          
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 1.083e-43
Identity = 100/184 (54.35%), Postives = 121/184 (65.76%), Query Frame = 1
Query:    7 SMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGMGV---P*APQVTRILRWTLLDNVESW--PMYGCTDATPGFEGGWGRVQKENPLSFVRNYRN*KQRRPGCRGSVSLLPK 543
            ++ISSA V T NRAS AQA++VAPFTGLKSS+ FP TKKTNNDITSIASNGGRV CM+VWPP G KKFETLSYLPPL++E L KE+ YLIR GWIPCLEFELEKG        +P       WT+      W  P++G TD++   +      + E P SF+R       R+  C   ++  PK
Sbjct:    2 ALISSAAVTTVNRASSAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTM------WRLPLFGATDSSQVLK-ELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTPK 178          
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 4.115e-43
Identity = 90/142 (63.38%), Postives = 106/142 (74.65%), Query Frame = 1
Query:    1 ASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGMGVP*APQVTRIL---RWTLLDNVESWPMYGCTDA 417
            ASSM+S+ATVA+ NR S AQA+MVAPFTGLKS+  FP T+KTN+DITSI SNGG+VQCMKVWP  G+KKFETLSYLPPL+ E L  E+ YL+RSGWIPCLEFELE G+      +V        WT+       PM+GCTDA
Sbjct:    2 ASSMLSTATVASINRVSPAQATMVAPFTGLKSTPVFPTTRKTNSDITSITSNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMW----KLPMFGCTDA 139          
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 7.018e-43
Identity = 93/159 (58.49%), Postives = 111/159 (69.81%), Query Frame = 1
Query:   13 ISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGMGV---P*APQVTRILRWTLLDNVESWPMYGCTDATPGFEGGWGRVQKENPLSFVR 480
            ISS+ +AT NR +  QAS+ APFTGLKS+ AFP TKK NND +S+ SNGGRVQCMKVWPP GLKK+ETLSYLPPLSDEAL KEI+YLIR+ WIPCLEFELE G        +P       WT+       PM+GCTD+    +   G  +KE P +F+R
Sbjct:    4 ISSSAIATVNRTTSTQASLAAPFTGLKSNVAFPVTKKANNDFSSLPSNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMW----KLPMFGCTDSAQVMK-EVGECKKEYPNAFIR 157          
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.042e-42
Identity = 91/142 (64.08%), Postives = 104/142 (73.24%), Query Frame = 1
Query:    1 ASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKG---MGVP*APQVTRILRWTLLDNVESWPMYGCTDA 417
            ASSM+S+A VA  NRAS AQASMVAPFTGLKS+SAFP T+KT  DITSIASNGGRVQCM+VWPP G K +ETLSYLPPL+ E L KE+ YL+R GW+PCLEFELE G        +P       WT+       PM+GCTDA
Sbjct:    2 ASSMLSTAAVACINRASPAQASMVAPFTGLKSTSAFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMW----KLPMFGCTDA 139          
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.042e-42
Identity = 97/163 (59.51%), Postives = 114/163 (69.94%), Query Frame = 1
Query:    1 ASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGMGV---P*APQVTRILRWTLLDNVESWPMYGCTDATPGFEGGWGRVQKENPLSFVR 480
            A SMISSATVA  +RAS AQ+SMVAPFT LKS+SAFP T+KTNNDITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E L KE++YL+R   IPCLEFELE G        +P       WT+       PM+GC D++   +      +K  P +F+R
Sbjct:    2 ACSMISSATVAAVSRASPAQSSMVAPFTCLKSTSAFPVTQKTNNDITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMW----KLPMFGCNDSSQVLK-ELEECKKAYPSAFIR 159          
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 5.941e-42
Identity = 98/165 (59.39%), Postives = 116/165 (70.30%), Query Frame = 1
Query:    1 ASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGMGV---P*APQVTRILRWTLLDNVESWPMYGCTDATPGFEGGWGRVQKENPLSFVR 480
            ASSMISS TVAT  A+R + AQA MVAPF GLKSSSAFP T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R  W+PCLEFELE G        +P       WT+       PM+GCTD++   +      +K  P SF+R
Sbjct:    2 ASSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMW----KLPMFGCTDSSQVLK-ELEEAKKAYPQSFIR 160          
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.729e-41
Identity = 98/165 (59.39%), Postives = 116/165 (70.30%), Query Frame = 1
Query:    1 ASSMISSATVAT--ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGMGV---P*APQVTRILRWTLLDNVESWPMYGCTDATPGFEGGWGRVQKENPLSFVR 480
            ASSMISS TVAT  A+R + AQA MVAPFTGLKSSSA P T+K+N DITSIASNGGRVQCM+VWPP GLKKFETLSYLPPLS E+L KE++YL+R  W+PCLEFELE G        +P       WT+       PM+GCTD++   +      +K  P SF+R
Sbjct:    2 ASSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSN-DITSIASNGGRVQCMQVWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMW----KLPMFGCTDSSQVLK-ELEEAKKAYPQSFIR 160          
BLAST of EY710670 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.463e-40
Identity = 88/144 (61.11%), Postives = 109/144 (75.69%), Query Frame = 1
Query:    1 ASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNN-DITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGMGV---P*APQVTRILRWTLLDNVESWPMYGCTDAT 420
            ASS++SSA VAT  R+++AQASMVAPFTGLKS+++FP TKK NN DITS+ASNGGRV+CM+VWPP  +KK+ETLSYLP LSDE LLKE+ YL+++GW+PCLEFE E G        +P       WT+       PM+GCTDAT
Sbjct:    2 ASSIVSSAAVAT--RSNVAQASMVAPFTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMW----KLPMFGCTDAT 139          
The following BLAST results are available for this feature:
BLAST of EY710670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RBS_FAGCR4.396e-4566.44Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GOSHI2.849e-4454.89Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA1.083e-4354.35Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES4.115e-4363.38Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LACSA7.018e-4358.49Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HEVBR2.042e-4264.08Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE2.042e-4259.51Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_PYRPY5.941e-4259.39Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP1.729e-4159.39Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU1.463e-4061.11Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-083-H02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710670 ID=EY710670; Name=EY710670; organism=Citrus sinensis; type=EST; length=1043bp
GCTTCCTCAATGATCTCATCGGCCACCGTTGCCACCGCGAACCGCGCCAG
CCTTGCTCAGGCCAGCATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTT
CTGCTTTCCCAGCAACCAAGAAGACCAACAATGACATTACTTCCATTGCA
AGCAACGGCGGAAGAGTCCAATGCATGAAGGTGTGGCCACCAACTGGCTT
GAAGAAGTTCGAGACTCTCTCATACCTCCCGCCACTGTCCGATGAAGCTT
TGCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTG
GAATTCGAGTTGGAGAAAGGGATGGGTGTACCGTGAGCACCACAAGTCAC
CAGGATACTACGATGGACGCTACTGGACAATGTGGAAAGCTGGCCCATGT
ATGGGTGCACAGATGCAACCCCAGGTTTTGAAGGAGGTTGGGGGAGGGTC
CAAAAGGAAAACCCACTTTCATTCGTCCGAAATTATCGGAATTGAAAACA
AAGACGTCCAGGTTGCAGGGGATCAGTTTCATTGCTGCCAAAGCCCCCAA
GGGGTCCTAGGTTCCCAATATAAAATTTTGGGTACCACCCCCTGGCAAAA
TTGGTTGAATAATATTATTGGTAAACCCCCAAAAGGTTTATTTCAATCAA
GGGGGGGTTTAGGGTTGGCTTTAAAATTTGAACCAAGGGCGGACGGTTGC
TCCCGGGCCCAATTTTTTTGGTTTTCCCCCCCCAGAAGCCAAAAAAGAAC
ACATAAAAAGATAAAGAAAAACCAGGAAACAAATCACACAAAAAAAAGAA
AAGGGGGGCGCCCCACGAAAGGAATACTCAAGCTTATAAGACGAGAGAGA
GGGGCAAAGACGAAAGCAAGTATTGGTAAAGAAGAATAAAAAGTAATGAA
AGTTAAGAGGGGGCGGGAAATATTAATAAAAAAAGAAAAGAGAGAGAGAA
AAAAAAAACAAACAGAGAGGTATACAAAAAAACGATAAAGTGATGTCGCG
TTACGGAAAAAAAAAGAGCCATACAACACCCCCTGTCAATATT
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