EY710661

Overview
NameEY710661
Unique NameEY710661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710661 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 3.096e-45
Identity = 90/105 (85.71%), Postives = 97/105 (92.38%), Query Frame = 3
Query:    3 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 317
            Q+LQPMLQELGKQNPQLVRLIQEHQADFLRLINEPV+G E N+ +QL   MPQ++ VTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct:  274 QILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVEGEE-NVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377          
BLAST of EY710661 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 1.438e-42
Identity = 89/109 (81.65%), Postives = 98/109 (89.91%), Query Frame = 3
Query:    3 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG--EGNLGDQLAGLMPQ--SIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 317
            Q+LQPMLQELGKQNP L+RLIQ+HQADFLRLINEPV+GG   GNL  Q+A  MPQ  +IQVT EEREAIERLEAMGF+RA+VLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct:  311 QVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419          
BLAST of EY710661 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 157.532 bits (397), Expect = 3.666e-38
Identity = 78/106 (73.58%), Postives = 93/106 (87.74%), Query Frame = 3
Query:    3 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGG-EGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 317
            Q+LQP+LQELGKQNPQ+++LIQE+QA+FL LINEP +G  E NL DQ    MPQ+I VTPEE EAI RLEAMGFDRA+VL+VFFACNK+E+LAANYLLDHM+EF+D
Sbjct:  283 QILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388          
BLAST of EY710661 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 4.481e-36
Identity = 73/107 (68.22%), Postives = 92/107 (85.98%), Query Frame = 3
Query:    3 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQGGEGNLG--DQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 317
            Q+LQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP +G +G++   DQ    MP S+ VTPEE+E+IERLEAMGFDRAIV+E F +C++NEELAANYLL+H  +FED
Sbjct:  262 QILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368          
BLAST of EY710661 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 149.058 bits (375), Expect = 1.304e-35
Identity = 73/107 (68.22%), Postives = 92/107 (85.98%), Query Frame = 3
Query:    3 QLLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQG--GEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFED 317
            Q+LQPMLQELGKQNPQL+RLIQE+QA+FL+L+NEP +G  GEG++ DQ    MP +I VTP E+EAI+RLEAMGFDRA+V+E F AC++NEELAANYLL++  +FED
Sbjct:  265 QILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371          
BLAST of EY710661 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 6.282e-22
Identity = 51/106 (48.11%), Postives = 75/106 (70.75%), Query Frame = 3
Query:    6 LLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ----------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 293
            LL  +LQ++G++NPQL++ I +HQ  F++++NEPVQ          GG G + +  +G M   IQVTP+E+EAIERL+A+GF   +V++ +FAC KNE LAAN+LL
Sbjct:  298 LLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402          
BLAST of EY710661 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 8.204e-22
Identity = 51/106 (48.11%), Postives = 74/106 (69.81%), Query Frame = 3
Query:    6 LLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ----------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 293
            LL  +LQ++G++NPQL++ I +HQ  F++++NEPVQ          GG G + +   G M   IQVTP+E+EAIERL+A+GF   +V++ +FAC KNE LAAN+LL
Sbjct:  297 LLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGGGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 401          
BLAST of EY710661 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 5.318e-21
Identity = 51/112 (45.54%), Postives = 75/112 (66.96%), Query Frame = 3
Query:    6 LLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ----------------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 293
            LL  +LQ++G++NPQL++ I +HQ  F++++NEPVQ                GG G + +  +G M   IQVTP+E+EAIERL+A+GF   +V++ +FAC KNE LAAN+LL
Sbjct:  298 LLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 408          
BLAST of EY710661 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.945e-21
Identity = 51/113 (45.13%), Postives = 75/113 (66.37%), Query Frame = 3
Query:    6 LLQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVQ-----------------GGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLL 293
            LL  +LQ++G++NPQL++ I +HQ  F++++NEPVQ                 GG G + +  +G M   IQVTP+E+EAIERL+A+GF   +V++ +FAC KNE LAAN+LL
Sbjct:  298 LLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGGIAEAGSGHM-NYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 409          
BLAST of EY710661 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 50/112 (44.64%), Postives = 76/112 (67.86%), Query Frame = 3
Query:    6 LLQPMLQELGKQNPQLVRLIQEHQADFLRLINEP---------VQGGEGNLGDQLAGLMPQSIQVTPEEREAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHMHEFE 314
            LL  +LQ+LG++NPQL++ I  HQ  F++++NEP         V+G  G +G++   +    IQVTP+E+EAIERL+A+GF  ++V++ +FAC KNE LAAN+LL    + E
Sbjct:  254 LLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGEVGAIGEEAPQM--NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363          
The following BLAST results are available for this feature:
BLAST of EY710661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RD23D_ARATH3.096e-4585.71Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RD23C_ARATH1.438e-4281.65Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RAD23_ORYSJ3.666e-3873.58Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23B_ARATH4.481e-3668.22Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23A_ARATH1.304e-3568.22Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_HUMAN6.282e-2248.11UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23B_BOVIN8.204e-2248.11UV excision repair protein RAD23 homolog B OS=Bos ... [more]
RD23B_RAT5.318e-2145.54UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE6.945e-2145.13UV excision repair protein RAD23 homolog B OS=Mus ... [more]
RD23A_MOUSE1.185e-2044.64UV excision repair protein RAD23 homolog A OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-083-G04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710661 ID=EY710661; Name=EY710661; organism=Citrus sinensis; type=EST; length=543bp
CTCAATTATTGCAGCCCATGCTTCAAGAGTTGGGGAAACAAAATCCTCAG
CTAGTGAGGCTTATTCAGGAACATCAGGCTGACTTCCTTCGGCTTATCAA
TGAACCTGTTCAAGGTGGTGAGGGGAATTTGGGGGACCAGCTTGCTGGGT
TAATGCCACAGTCAATACAAGTCACGCCCGAAGAACGTGAAGCCATAGAA
CGTCTTGAGGCAATGGGCTTTGATCGAGCAATTGTATTGGAGGTGTTCTT
TGCCTGCAACAAGAATGAGGAACTTGCTGCCAACTACCTTTTAGACCATA
TGCATGAGTTTGAGGATTGATTGAAAGGGGAATAGAAAAGATTCAAGATG
AAAATGATGGTTACTACCTTTGGACGGCATTTATTAAAAAATACCTCTAA
TTAGTTTCTTTCCCTTCTCATTTCTCCTCGACTTCATTTGTTAAACAAAG
TTCAGATATTCTTGCTTTGGTATGGTGGTGGAGAGTGAACAAGTAATGCA
AGATGTAACATTCTTCACCTTCTCAAAAAAAAAAAAAAAAAAA
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