EY710660

Overview
NameEY710660
Unique NameEY710660
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1065
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY710660 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.195e-37
Identity = 95/172 (55.23%), Postives = 107/172 (62.21%), Query Frame = 3 
Query:   87 IGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKTQTTSANIRHMN*FMPDGAMLGAAGFIIPEAFNKFGC*LWSLKAVWVQELELYFLMGNTLELLSGKKIP 602
            +G  EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KK +   A  +         AMLGAAGFIIPEA NK+G      +AVW +   L  L GNTL    GK IP
Sbjct:    4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPE-NFAKYQAFELIHARWAMLGAAGFIIPEALNKYGA-NCGPEAVWFKTGAL-LLDGNTLNYF-GKNIP 168
The following BLAST results are available for this feature:
BLAST of EY710660 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CB26_ARATH1.195e-3755.23Chlorophyll a-b binding protein CP26, chloroplasti... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-083-G03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710660 ID=EY710660; Name=EY710660; organism=Citrus sinensis; type=EST; length=1065bp
ATTTCATTTCTCTAACACAAAGAAGCAGCAGCAGCAACACTCTGAAGATG
GCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTGGAGCTAAGGA
GATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTC
CAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAG
AAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGT
TAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGC
CCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAA
GTTCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAGCAAGAAAACCCA
GACGACTTCAGCAAATATCAGGCATATGAATTGATTCATGCCAGATGGGG
CCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTTAACAAGTTT
GGGTGCTAACTGTGGTCCCTGAAAGCTGTCTGGGTTCAAGAACTGGAACT
TTACTTCTTGATGGGAAACACTTTGGAACTACTTTCGGGAAAAAAAATCC
CAAATCCAACCTTGGTTTTTGGTGTCCTTGGGCTAGAAAAATTGTTTCCT
TTGAGGGTGGGGGCTGAAAATTAAAAAAAATCCCCCCAACGGGTTTGGAT
TTTTGGAAAAAACAAACTTACACCCACCAGGAGGTCCAATTTTAACACAC
AGGGGATATTATACAAAGGGTTCCCCAAGACCAAATTTTACCATGTTATA
CAAGAAAATGAAAAATAAACAAAAAAGGAGAAAAACACGGAACGGTGTTA
TTCCACCACATTAAAAATATTACTTAACAAACATATCAAATCAACCAACA
ATACAATAAAAGGATAAAAAGACAATGTTGACACTAATTCTTAATAACGC
ACTACTACAAAAACATCCAACGTATAAATAAAAAGATATACAATCTTATA
GGCTATCACCACAGACAGAGAAAGAAACATCTCACTGAACATAAGCAGTG
ATTAAAACCAACCCA
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