EY710658 | Citrus Genome Database

Overview


Name	EY710658
Unique Name	EY710658
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1006

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_VITVI (Histone H3.3 OS=Vitis vinifera PE=2 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.528e-51
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 313
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 88

HSP 2 Score: 49.6766 bits (117), Expect = 1.528e-51
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_TOBAC (Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.528e-51
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 313
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 88

HSP 2 Score: 49.6766 bits (117), Expect = 1.528e-51
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_PINPS (Histone H3.3 OS=Pinus pinaster PE=2 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.528e-51
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 313
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 88

HSP 2 Score: 49.6766 bits (117), Expect = 1.528e-51
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_ORYSJ (Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3 PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.528e-51
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 313
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 88

HSP 2 Score: 49.6766 bits (117), Expect = 1.528e-51
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_ORYSI (Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_011536 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.528e-51
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 313
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 88

HSP 2 Score: 49.6766 bits (117), Expect = 1.528e-51
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_ORYCO (Histone H3.3 OS=Oryza coarctata PE=2 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.528e-51
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 313
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 88

HSP 2 Score: 49.6766 bits (117), Expect = 1.528e-51
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_MEDSA (Histone H3.3 OS=Medicago sativa PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.528e-51
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 313
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 88

HSP 2 Score: 49.6766 bits (117), Expect = 1.528e-51
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_LOLTE (Histone H3.3 OS=Lolium temulentum PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 1.528e-51
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 313
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 88

HSP 2 Score: 49.6766 bits (117), Expect = 1.528e-51
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_LOLMU (Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.528e-51
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 313
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 88

HSP 2 Score: 49.6766 bits (117), Expect = 1.528e-51
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

BLAST of EY710658 vs. ExPASy Swiss-Prot
Match: H33_GOSHI (Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 1.528e-51
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 2

Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 313
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSH 88

HSP 2 Score: 49.6766 bits (117), Expect = 1.528e-51
Identity = 26/37 (70.27%), Postives = 28/37 (75.68%), Query Frame = 3

Query:  351 LVGLFEDTNLCAIHAKRGHYYGPRTYSFARKIRGERA 461
            LVGLFEDTNLCAIHAKR     P+    AR+IRGERA
Sbjct:  101 LVGLFEDTNLCAIHAKRVTIM-PKDIQLARRIRGERA 136

The following BLAST results are available for this feature:

BLAST of EY710658 vs. ExPASy Swiss-Prot

BLAST of EY710658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 197


Match Name	E-value	Identity	Description
H33_VITVI	1.528e-51	100.00	Histone H3.3 OS=Vitis vinifera PE=2 SV=3	[more]
H33_TOBAC	1.528e-51	100.00	Histone H3.3 OS=Nicotiana tabacum GN=H3 PE=1 SV=1	[more]
H33_PINPS	1.528e-51	100.00	Histone H3.3 OS=Pinus pinaster PE=2 SV=3	[more]
H33_ORYSJ	1.528e-51	100.00	Histone H3.3 OS=Oryza sativa subsp. japonica GN=H3...	[more]
H33_ORYSI	1.528e-51	100.00	Histone H3.3 OS=Oryza sativa subsp. indica GN=OsI_...	[more]
H33_ORYCO	1.528e-51	100.00	Histone H3.3 OS=Oryza coarctata PE=2 SV=3	[more]
H33_MEDSA	1.528e-51	100.00	Histone H3.3 OS=Medicago sativa PE=1 SV=2	[more]
H33_LOLTE	1.528e-51	100.00	Histone H3.3 OS=Lolium temulentum PE=2 SV=2	[more]
H33_LOLMU	1.528e-51	100.00	Histone H3.3 OS=Lolium multiflorum GN=RH3 PE=2 SV=...	[more]
H33_GOSHI	1.528e-51	100.00	Histone H3.3 OS=Gossypium hirsutum GN=HIS3 PE=2 SV...	[more]

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Properties


Property Name	Value
Genbank description	CS00-C3-701-083-G01-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY710658 ID=EY710658; Name=EY710658; organism=Citrus sinensis; type=EST; length=1006bp
CGAATTTTTAGAGAGAGAAATTGAGTAGAGGAGTTGAAGAAACTCAGAGA
TGGCCCGTACCAAGCAAACTGCACGTAAGTCAACCGGAGGAAAGGCTCCT
AGGAAGCAACTTGCTACCAAGGCCGCCCGTAAGTCTGCGCCCACCACCGG
TGGTGTTAAGAAGCCTCATCGTTACCGTCCTGGAACCGTCGCCCTTCGAG
AAATTCGCAAGTACCAGAAGAGTACCGAGCTGCTTATCAGGAAACTCCCA
TTCCAGAGACTTGTTCGTGAAATTGCTCAGGACTTTAAGACTGATCTGCG
TTTCCAGAGCCATGCAGTGCTGGCCCTGCAGGAGGCAGCGGAGGCTTAAC
CTTGTTGGTCTCTTCGAGGACACTAACCTCTGCGCCATTCATGCAAAGCG
TGGTCACTATTATGGCCCAAGGACATACAGCTTTGCCCGTAAGATCCGTG
GCGAGCGTGCTTAAACCGTAATTGCTGGGTTGGCTTTCAATTTGAATGGA
TGGAAAGGGAAAGGGGGGCATTTGGAATGGGTTAAATTTGTACGTGGGGG
GTTGGGGGGGGGGGTAAAAAAGGGGTAAGGAATTCCCATAAGTTATTAAA
AAAATGGCTTTTGCTCTCTTCTGGGGTTTGTTTTTTGGGGGGGGTTTTTA
AAAGGCCAATTTGGTAGGGAAAGGGGAATTTTTATTACCCCATAAAAAAC
AAGGAATTATAGAGGTATCTATAGAAAAAATGAAGAAGACAGAAAAAAAG
GGGGGAGAAAAACAACTTCATGAAATTTTAGCCCCACAAACACGACATAT
GTTTGTTACTAAAGAGAAAAAAAGACAAAAAAAAATAGAAATAGAGACAC
GGTAGTACAGTCACAATAGAGAGACCAACGATAATACCGGCGGCCTGGGG
AGGCGAGAAGAATAAATACTTGCTGTAAACATTAAGTCAAAGCAATAAGT
GAAACATACAAGAATAAATCAGGAGCACGGCAGAGAAAATCCACAGATAG
TGAATG