EY710653

Overview
NameEY710653
Unique NameEY710653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1006
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710653 vs. ExPASy Swiss-Prot
Match: RH28_ORYSJ (DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa subsp. japonica GN=Os12g0481100 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 6.897e-28
Identity = 81/178 (45.51%), Postives = 98/178 (55.06%), Query Frame = 3
Query:    3 ILRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDE-DQVDKLQGSGKDKKEKAGISMVDLAYRRXXXXXXXXXXLDAGKIVKSNGKKSKHSSQESNSRAKEMRELFHSDMSEKK 533
            ILRKAEMEATKAENMIAHK+EI++RPKRTWF TEKEKKL  KA K S  +GK S + V SAQQA                                 DE +  ++ + S   KKEK G S+VD+AYRR            AG     N KK+K  S +  +R +EM+ELF +DMSE K
Sbjct:  598 ILRKAEMEATKAENMIAHKDEIYSRPKRTWFATEKEKKLLAKAAKESTSQGK-SNSGVISAQQAEDLRLKEKKRREREKNLPRKKRRRLEAEREMLEDESEDEEEAKESKGGKKEKKGQSLVDVAYRRAKSMKASGKR-GAGTGKGKNDKKAKQHSGKGPTRQEEMQELFQNDMSEWK 773          

HSP 2 Score: 23.483 bits (49), Expect = 6.897e-28
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  538 KRTGGIRKKPKHSFKRQSR 594
            K+   +RKK K+SFK +SR
Sbjct:  779 KKNNVMRKKSKNSFKSKSR 797          
BLAST of EY710653 vs. ExPASy Swiss-Prot
Match: RH28_ARATH (DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana GN=RH28 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.710e-22
Identity = 70/191 (36.65%), Postives = 97/191 (50.79%), Query Frame = 3
Query:    6 LRKAEMEATKAENMIAHKEEIFARPKRTWFVTEKEKKLAVKADKASIEKGKGSGNEVTSAQQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD--------EDQVDKLQG--SGKDKK----EKAGISMVDLAYRRXXXXXXXXXXLDAGKIVKSN-GKKSKHSSQESNSRAKEMRELFHSDMSEKK 533
            LRKAEME  KAENM+ H++EI+ARPKRTWF+TEKEKKL  +A+K S   G  +G E+ SA +A                                 D        +++ D+ +G   GKDKK    +K G+++ DL Y R          +D+GK+ +    KK   S   +  R +EM++LF SDM EKK
Sbjct:  572 LRKAEMEFAKAENMLEHRDEIYARPKRTWFMTEKEKKLVAQAEKDS--AGNPAGGELVSADRAEDLKMKEKRKREREKNLPRKKRRKLEAAREMLEDNEGEEEEEDEEGDEKRGRSRGKDKKKQETDKKGLTLKDLGYMRAKAVKAKQRAIDSGKMERPKPDKKQSRSKPRNQPRGEEMKDLFKSDMGEKK 760          
The following BLAST results are available for this feature:
BLAST of EY710653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RH28_ORYSJ6.897e-2845.51DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sa... [more]
RH28_ARATH1.710e-2236.65DEAD-box ATP-dependent RNA helicase 28 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-083-F08-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710653 ID=EY710653; Name=EY710653; organism=Citrus sinensis; type=EST; length=1006bp
GAATCCTGAGAAAAGCTGAAATGGAAGCAACAAAGGCAGAAAATATGATT
GCTCATAAGGAAGAAATTTTTGCACGCCCTAAAAGAACTTGGTTTGTGAC
AGAAAAGGAGAAAAAGCTTGCAGTAAAGGCAGATAAGGCATCTATTGAAA
AAGGAAAAGGTTCTGGAAATGAGGTGACAAGTGCTCAACAGGCTGAAGAC
CTTAAAATAAAGGAAAAGAGGAAGCGAGAACGTGAGAAAAATTTGCCTCG
AAAGGAGCGTCGAAAATTAGAAGCAGCTAGAGAGATGTTGGAGGATGAAG
ATCAAGTAGACAAGTTACAAGGTAGTGGAAAAGACAAGAAGGAAAAGGCT
GGGATATCTATGGTTGACCTTGCTTACCGAAGAGCAAAAGCTGTGAAAGC
CAAGCAGAAGGCTCTGGACGCGGGGAAGATTGTGAAATCAAACGGCAAGA
AATCGAAACATTCTTCTCAAGAAAGTAATTCTAGGGCAAAAGAGATGCGG
GAACTGTTTCATAGTGACATGAGTGAGAAAAAAGCAGAAGAGAACTGGTG
GTATAAGAAAGAAGCCGAAGCATTCATTTAAGAGGCAATCACGTTTACAA
GCGCAGATAGTACTTCTAATACAAGCATTGAAAGGTTTCCCTGTATTGTA
TCTTAAGGAAAAAGAAATGAAAAAGGGCAGGAAAAAACTTGGATTGGCAA
ACTTTGACCTTAAAAAATTTGAGAAAATTCCGAAAAAAAGGCCCTCCTGG
CCCTCGGTAAAAATTTTAAAAAAAATCAAATAGAATTTTCAAAGGTTAAA
TTTTCCTGGTTTTTGCCCTTGGAAAAAATTTTTTTTTTGGGGGAAGGAAA
ATTTGAAATTTTTTCAAATCACAAATTTTGTTTTTCCTCTCACACAAAAA
AAAAAAGAAACAAAAAGAAAAAAAAAAACAAAAAACAAAAAAAGAAAAAA
AAAAAATAAAACAAAAAATAGAAATAAAGAAGAAGCAGGCGTGGACTGGC
TCTTTA
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