EY710545

Overview
NameEY710545
Unique NameEY710545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1052
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710545 vs. ExPASy Swiss-Prot
Match: NOP56_SCHPO (Nucleolar protein 56 OS=Schizosaccharomyces pombe GN=nop56 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 2.604e-63
Identity = 119/210 (56.67%), Postives = 156/210 (74.29%), Query Frame = 1
Query:   22 RIPGNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETK-IPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARIVKLIEDKSKLTEDMV 648
            +I   T+ V+ S+ D+++FGKVVQL +F PF++A  AL   N +SEG++ + L+NFLELNLPK    KK K SLGV +  + + I  E   I C ++E   +LLRG+R H D+ +K L PGD E+AQLGLGHSYSRAKVKFNVNR DNM+IQAI +LD LDKDIN+F+MR++EWYSWHFPEL KIV DNY YA IV L+ DK+ + ++M+
Sbjct:   23 QIAAKTKEVQLSLQDISKFGKVVQLRSFIPFKNAAHALENANDISEGVLNDFLKNFLELNLPKAS--KKKKVSLGVQDKNLATSIKSEIDAIECDTSELTQDLLRGIRFHGDKLLKQLSPGDFERAQLGLGHSYSRAKVKFNVNRNDNMIIQAIAILDQLDKDINTFAMRMKEWYSWHFPELSKIVGDNYKYAVIVTLVGDKTTINDEML 230          

HSP 2 Score: 23.8682 bits (50), Expect = 2.604e-63
Identity = 10/23 (43.48%), Postives = 15/23 (65.22%), Query Frame = 2
Query:  674 DKDKAKEIVEAGKSIMGKGFAGV 742
            DKD A+ I+ AGK  MG+  + +
Sbjct:  240 DKDIAQSIINAGKVSMGQDISEI 262          
BLAST of EY710545 vs. ExPASy Swiss-Prot
Match: NOP56_HUMAN (Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1 SV=4)

HSP 1 Score: 216.853 bits (551), Expect = 1.632e-55
Identity = 112/207 (54.11%), Postives = 144/207 (69.57%), Query Frame = 1
Query:   46 VRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARIVKLIEDKSKLTEDMVPAFKKI 666
            V  S+ ++ +F  +V+L AF PF S+  AL   N+VSEG++  +LR  LE +LP     KK K  LGV +PKIG+ I EE    CQ+   + E+LRGVRLHF   +K L      KAQLGLGHSYSRAKVKFNVNRVDNM+IQ+I LLD LDKDIN+FSMRVREWY +HFPELVKI+NDN  Y R+ + I ++ +L ED +   +++
Sbjct:   32 VEESVLNLGKFHSIVRLVAFCPFASSQVALENANAVSEGVVHEDLRLLLETHLPS----KKKKVLLGVGDPKIGAAIQEELGYNCQTGGVIAEILRGVRLHFHNLVKGLTDLSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDKDINTFSMRVREWYGYHFPELVKIINDNATYCRLAQFIGNRRELNEDKLEKLEEL 234          
BLAST of EY710545 vs. ExPASy Swiss-Prot
Match: NOP56_YEAST (Nucleolar protein 56 OS=Saccharomyces cerevisiae GN=NOP56 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.783e-55
Identity = 106/207 (51.21%), Postives = 145/207 (70.05%), Query Frame = 1
Query:   25 IPGNTEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETK-IPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARIVKLIEDKSKLTED 642
            I    + V+  I+D   F K+++L +F PF+ A +AL   N +SEGL++  L+  L+LNLPK    KK   +L +S+  +G  I EE   + C SNE   +L+RGVRLH ++  K L+ GDLE+AQLGLGH+YSRAKVKF+V + DN +IQAI LLD LDKDIN+F+MRV+EWY WHFPEL K+V DNY +A++V  I+DK+ L +D
Sbjct:   27 IGSRLKEVQEQINDFGAFTKLIELVSFAPFKGAAEALENANDISEGLVSESLKAILDLNLPKASS-KKKNITLAISDKNLGPSIKEEFPYVDCISNELAQDLIRGVRLHGEKLFKGLQSGDLERAQLGLGHAYSRAKVKFSVQKNDNHIIQAIALLDQLDKDINTFAMRVKEWYGWHFPELAKLVPDNYTFAKLVLFIKDKASLNDD 232          
BLAST of EY710545 vs. ExPASy Swiss-Prot
Match: NOP56_MACFA (Nucleolar protein 56 OS=Macaca fascicularis GN=NOP56 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 4.747e-55
Identity = 111/207 (53.62%), Postives = 144/207 (69.57%), Query Frame = 1
Query:   46 VRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARIVKLIEDKSKLTEDMVPAFKKI 666
            V  S+ ++ +F  +V+L AF PF S+  AL   N+VSEG++  +LR  LE +LP     KK K  LGV +PKIG+ I EE    CQ+   + E+LRGVRLHF   +K L      KAQLGLGHSYSRAKVKFNVNRVDNM+IQ+I LLD LDKDIN+FSMRVREWY +HFPELVKI+NDN  Y R+ + I ++ +L E+ +   +++
Sbjct:   32 VEESVLNLGKFHNIVRLVAFCPFASSQVALENANAVSEGVVHEDLRLLLETHLPS----KKKKVLLGVGDPKIGAAIQEELGYNCQTGGVIAEILRGVRLHFHNLVKGLTDLSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDKDINTFSMRVREWYGYHFPELVKIINDNATYCRLAQFIGNRRELNEEKLEKLEEL 234          
BLAST of EY710545 vs. ExPASy Swiss-Prot
Match: NOP56_PONAB (Nucleolar protein 56 OS=Pongo abelii GN=NOP56 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 1.058e-54
Identity = 110/207 (53.14%), Postives = 143/207 (69.08%), Query Frame = 1
Query:   46 VRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARIVKLIEDKSKLTEDMVPAFKKI 666
            V  S+ ++ +F  +V+L AF PF S+  AL   N+VSEG++  +LR  LE +LP     KK +  LGV +PKIG+ I EE    CQ+   + E+LRGVRLHF   +K L      KAQLGLGHSYSR KVKFNVNRVDNM+IQ+I LLD LDKDIN+FSMRVREWY +HFPELVKI+NDN  Y R+ + I ++ +L ED +   +++
Sbjct:   32 VEESVLNLGKFHNIVRLVAFCPFASSQVALENANAVSEGVVHEDLRLLLETHLPS----KKKRVLLGVGDPKIGAAIQEELGYNCQTGGVIAEILRGVRLHFHNLVKGLTDLSACKAQLGLGHSYSRTKVKFNVNRVDNMIIQSISLLDQLDKDINTFSMRVREWYGYHFPELVKIINDNATYCRLAQFIGNRRELNEDKLEKLEEL 234          
BLAST of EY710545 vs. ExPASy Swiss-Prot
Match: NOP56_MOUSE (Nucleolar protein 56 OS=Mus musculus GN=Nop56 PE=1 SV=2)

HSP 1 Score: 214.157 bits (544), Expect = 1.058e-54
Identity = 113/207 (54.59%), Postives = 142/207 (68.60%), Query Frame = 1
Query:   46 VRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARIVKLIEDKSKLTEDMVPAFKKI 666
            V   + ++ +F  VV+L AF PF S+  AL   N+VSEG++  +LR  LE  LP     KK K  LGV +PKIG+ I EE    CQ+   + E+LRGVRLHF   +K L      KAQLGLGHSYSRAKVKFNVNRVDNM+IQ+I LLD LDKDIN+FSMRVREWY +HFPELVKIVNDN  Y R+ + I ++ +L E+ +   ++I
Sbjct:   32 VEECVLNLGKFHNVVRLVAFCPFSSSQVALENANAVSEGVVHEDLRLLLETYLPS----KKKKVLLGVGDPKIGAAIQEELGYNCQTGGVIAEILRGVRLHFHNLVKGLTDLSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDKDINTFSMRVREWYGYHFPELVKIVNDNATYCRLAQFIGNRRELNEEKLEKLEEI 234          
BLAST of EY710545 vs. ExPASy Swiss-Prot
Match: NOP56_BOVIN (Nucleolar protein 56 OS=Bos taurus GN=NOP56 PE=2 SV=1)

HSP 1 Score: 213.772 bits (543), Expect = 1.381e-54
Identity = 110/207 (53.14%), Postives = 143/207 (69.08%), Query Frame = 1
Query:   46 VRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARIVKLIEDKSKLTEDMVPAFKKI 666
            V   + ++ +F  +V+L AF PF S+  AL   N+VSEG++  +LR  LE +LP     KK K  LGV +PKIG+ I EE    CQ+   + E+LRGVRLHF   +K L      KAQLGLGHSYSRAKVKFNVNRVDNM+IQ+I LLD LDKDIN+FSMRVREWY +HFPELVKI+NDN  Y R+ + I ++ +L E+ +   +++
Sbjct:   32 VEECVLNLGKFHNIVRLVAFCPFSSSQVALENANAVSEGVVHEDLRLLLETHLPP----KKKKVLLGVGDPKIGAAIQEELGYNCQTGGVIAEILRGVRLHFHNLVKGLTDLSACKAQLGLGHSYSRAKVKFNVNRVDNMIIQSISLLDQLDKDINTFSMRVREWYGYHFPELVKIINDNATYCRLAQFIGNRKELNEEKLEKLEEL 234          
BLAST of EY710545 vs. ExPASy Swiss-Prot
Match: NOP56_DICDI (Nucleolar protein 56 OS=Dictyostelium discoideum GN=nop56 PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 4.913e-52
Identity = 105/211 (49.76%), Postives = 144/211 (68.25%), Query Frame = 1
Query:   37 TEAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARIVKLIEDKSKLTEDMVPAFKKIL 669
            T+ V+ S+ D ++F KV ++    PF SA +AL   NS+SEG++T  L +FL+    K  EG      LGV + K+ + I +E KI C SN    E++R +R H   F K LK  DL KAQLGLGHSYSR+KVKFNV++VDNM+IQ+I LL+ LDKD+N+F MR+REWYSWHFPEL+KI+     +A++ KLI++K  LTE+ +   K+IL
Sbjct:   28 TDQVQKSMQDFSKFSKVCKMVGSLPFTSAENALENINSISEGILTESLHDFLKQTFSKKTEG----VVLGVCDNKLSASIGDELKISCLSNSHTSEIIRCIRNHISEFTK-LKSADLLKAQLGLGHSYSRSKVKFNVHKVDNMIIQSICLLEQLDKDLNTFFMRLREWYSWHFPELLKIIESQVHFAKLAKLIQNKKNLTEESLDEIKEIL 233          
BLAST of EY710545 vs. ExPASy Swiss-Prot
Match: YZVL_CAEEL (Uncharacterized NOP5 family protein K07C5.4 OS=Caenorhabditis elegans GN=K07C5.4 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 3.084e-46
Identity = 95/202 (47.03%), Postives = 136/202 (67.33%), Query Frame = 1
Query:   40 EAVRSSISDMNRFGKVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEE-TKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARIVKLIEDKSKLTED 642
            + V ++ +D  +F ++V+L +F PF++   AL  CNS+SEGL   +L NFL+ +LPK    KK    LG+++ K+   + E    +       + E+LRG R+HF+R  K+L    L KAQL LGHSYSR+KVKF+V+RVDNMVIQ+I LLD LDKDIN F MR+REWYS+H+PEL ++  D Y Y+R+   I D++K+ E+
Sbjct:   32 QEVDAAHADGYKFSQIVELASFDPFKNTEAALENCNSISEGLAHPDLTNFLQKSLPK----KKKHVVLGINDSKLAGSLTEAFPDLKLVFGGVITEILRGTRVHFERLAKNLPHHSLSKAQLSLGHSYSRSKVKFDVHRVDNMVIQSIALLDQLDKDINLFGMRIREWYSYHYPELFRLAPDQYKYSRLAVAILDRNKMAEN 229          
BLAST of EY710545 vs. ExPASy Swiss-Prot
Match: NOP5B_ARATH (Probable nucleolar protein 5-2 OS=Arabidopsis thaliana GN=NOP5-2 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 4.038e-38
Identity = 85/181 (46.96%), Postives = 119/181 (65.75%), Query Frame = 1
Query:   82 KVVQLTAFHPFESALDALNQCNSVSEGLMTNELRNFLELNLPKVKEGKKAKFSLGVSEPKIGSHIFEETKIPCQSNEFVLELLRGVRLHFDRFIKDLKPGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVNDNYLYARIVKLIEDK 624
            K+V+L AF  F++  +AL     + EG  +  LR FL+ N     +G+    +L V++ K+G+ I E+ KI C  N  V+ELLRGVR  F   I  L   DL    LGL HS +R K+KF+ ++VD M+IQAI LLD LDK++N+++MRVREWY WHFPEL KI++DN LYA+ VKL+ ++
Sbjct:   41 KMVKLKAFEKFDNTSEALEAVAKLLEGAPSKGLRKFLKANC----QGE----TLAVADSKLGNVIKEKLKIDCIHNNAVMELLRGVRSQFTELISGLGDQDLAPMSLGLSHSLARYKLKFSSDKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELAKIISDNILYAKSVKLMGNR 213          
The following BLAST results are available for this feature:
BLAST of EY710545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
NOP56_SCHPO2.604e-6356.67Nucleolar protein 56 OS=Schizosaccharomyces pombe ... [more]
NOP56_HUMAN1.632e-5554.11Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1... [more]
NOP56_YEAST2.783e-5551.21Nucleolar protein 56 OS=Saccharomyces cerevisiae G... [more]
NOP56_MACFA4.747e-5553.62Nucleolar protein 56 OS=Macaca fascicularis GN=NOP... [more]
NOP56_PONAB1.058e-5453.14Nucleolar protein 56 OS=Pongo abelii GN=NOP56 PE=2... [more]
NOP56_MOUSE1.058e-5454.59Nucleolar protein 56 OS=Mus musculus GN=Nop56 PE=1... [more]
NOP56_BOVIN1.381e-5453.14Nucleolar protein 56 OS=Bos taurus GN=NOP56 PE=2 S... [more]
NOP56_DICDI4.913e-5249.76Nucleolar protein 56 OS=Dictyostelium discoideum G... [more]
YZVL_CAEEL3.084e-4647.03Uncharacterized NOP5 family protein K07C5.4 OS=Cae... [more]
NOP5B_ARATH4.038e-3846.96Probable nucleolar protein 5-2 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-024-D09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710545 ID=EY710545; Name=EY710545; organism=Citrus sinensis; type=EST; length=1052bp
TTGGGACCGGCGGTACGGGTCCGGATTCCCGGGAACACTGAGGCTGTTCG
AAGCTCCATTTCCGATATGAACCGCTTTGGTAAAGTCGTTCAGCTCACGG
CCTTTCACCCATTCGAGTCCGCTCTCGATGCTCTTAATCAGTGCAACTCT
GTTTCTGAAGGGCTTATGACCAATGAATTGAGGAACTTTTTGGAGCTTAA
TCTCCCAAAAGTTAAGGAAGGAAAGAAGGCAAAATTTAGTTTGGGAGTAT
CTGAGCCTAAGATTGGGTCCCATATATTTGAGGAGACTAAGATTCCTTGT
CAAAGCAATGAGTTTGTTCTTGAACTTCTTCGTGGTGTGCGTCTGCATTT
TGATAGGTTCATTAAGGACTTAAAGCCTGGTGACTTAGAAAAAGCTCAGC
TTGGTTTGGGGCACAGTTACAGCAGAGCAAAGGTGAAATTCAATGTCAAC
CGAGTTGACAATATGGTTATTCAAGCAATTTTTCTTCTGGATACTCTTGA
CAAGGATATCAATTCCTTCTCCATGCGTGTGAGGGAGTGGTACTCATGGC
ATTTCCCGGAATTAGTCAAGATTGTCAATGACAACTATCTCTATGCCCGA
ATTGTAAAACTTATAGAGGACAAGTCAAAGTTGACTGAAGACATGGTCCC
GGCTTTTAAAAAAATACTTGGGGGATAAAGACAAGGCCAAGGAAATTGTG
GAGGCTGGCAAAAGCATCATGGGGAAAGGATTTGCCGGCGTTTGAATTAA
TTAAAGGCCCAAAGTTTTGCCCCAAGGGGGGAGGGAACCTCCCAAAGATA
AGGAAAAAAATTTTTAGAAGATTTCGGGGTTTCTAAAAATGAAAGGAAAT
TTGCCCCCCAATTTTGGCCCCCCTTTATAGGGGGGGGAAATTGTGTGGGG
GGGCCCGGGGTTGGTTTTTTCCCCGGGGGGGGGGAGAACCCCCCCACAAA
AACGTGGGGGAGAAAAAGGGGGCCCCCACCTTTTCACCCCCCCCCTTTCA
AATAATTCCCTTGTGGGGGGGGGGGGAGAAAAAAAAAAAACCCACCCCTC
CC
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