EY710542

Overview
NameEY710542
Unique NameEY710542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1024
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710542 vs. ExPASy Swiss-Prot
Match: NDK2_ARATH (Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2)

HSP 1 Score: 202.986 bits (515), Expect = 2.333e-51
Identity = 109/159 (68.55%), Postives = 119/159 (74.84%), Query Frame = 3
Query:  138 SSNKLTLRTTSHLAAFHSQSRLFVKPPSCRRRRTVARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVGASARKL*GSTDPPQAEPGKIKGD 614
            S  ++  RT   LAAF  Q RLF +  S  RRR  A +S E+GIFLPHLVASME VEETYIMVKPDG+QRGLVGEIISRFE            QCPK+LAEEHYKDL++K FFP LIEYITSGPVVCMAWEG GV ASARKL G TDP QAEPG I+GD
Sbjct:   31 SPARVNFRTA--LAAFRPQFRLFSRN-SASRRRLRASSSAESGIFLPHLVASMEDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGD 186          
BLAST of EY710542 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.672e-49
Identity = 106/176 (60.23%), Postives = 122/176 (69.32%), Query Frame = 3
Query:   87 SSPTLVGKISCSRRLSYSSNKLTLRTTSHLAAFHSQSRLFVKPPSCRRRRTVARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVGASARKL*GSTDPPQAEPGKIKGD 614
            SSPT   ++SC+       N +  +   HLAAF     LF    S   R   ++ ++ T IFLPHLVASME+VEETYIM+KPDGVQRGLVGEIISRFE             CPK+LAEEHYKDL SKPFFPKLI+YITSGPVVCMAWEG GV ASARKL G+T+P  AEPG I+GD
Sbjct:   19 SSPT--SRLSCAPSCKLILNPI--KKNHHLAAFQPAVHLFASNQS---RSHASKRNHTTRIFLPHLVASMEEVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLTGLKLFHCPKELAEEHYKDLQSKPFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATNPLNAEPGTIRGD 187          
BLAST of EY710542 vs. ExPASy Swiss-Prot
Match: NDK2_SPIOL (Nucleoside diphosphate kinase 2, chloroplastic OS=Spinacia oleracea GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.849e-48
Identity = 105/183 (57.38%), Postives = 120/183 (65.57%), Query Frame = 3
Query:   78 GVSSSPTLVGKISCSRRLSYSSNKLTLRTTSH----LAAFHSQSRLFVKPPSCRRRRTVARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVGASARKL*GSTDPPQAEPGKIKGD 614
            G+SS    +  +  S   +     L  R  +H    LAAFHSQS LF             + S +  IFLPHLVASMEQVEETYIM+KPDGVQRGLVGEIISRFE             CPK+LAEEHYKDL +K F+ KLI+YITSGPVVCMAWEG GV AS+RKL G+TDP QAEPG I+GD
Sbjct:    6 GLSSPCNCISSLPHSSSTTTRHQNLLFRRNNHHQQKLAAFHSQSHLFSTKCPLISHSLPRKKSFKPHIFLPHLVASMEQVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLIGLKMYPCPKELAEEHYKDLKAKSFYQKLIDYITSGPVVCMAWEGVGVVASSRKLIGATDPLQAEPGTIRGD 188          
BLAST of EY710542 vs. ExPASy Swiss-Prot
Match: NDK2_PEA (Nucleoside diphosphate kinase 2, chloroplastic OS=Pisum sativum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 7.767e-47
Identity = 104/183 (56.83%), Postives = 120/183 (65.57%), Query Frame = 3
Query:   72 ALGVSSSPTLVGKISCSRRLSYSSNKLTLRTTSHLAAFHSQSRLFV--KPPSCRRRRTVARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVGASARKL*GSTDPPQAEPGKIKGD 614
            A+ V S   L    S     +  +    LRTT +L+AF S+S LF      S   +    R+S E+GIFLP L+ S+EQV++ YIMVKPDGVQRGLVGEIISRFE            QC K+LAEEHYK LN K FFPKLIEYITSGPVV MAWEG GV  SARKL G+TDP QAEPG I+GD
Sbjct:    3 AMAVFSGSNLFATSSLLLTTNSKTRYSQLRTTQNLSAFSSKSHLFSPSSTSSSYPKTFRTRSSTESGIFLPRLITSLEQVDQAYIMVKPDGVQRGLVGEIISRFEKKGFKLTGLKLFQCSKELAEEHYKHLNQKSFFPKLIEYITSGPVVSMAWEGVGVVPSARKLIGATDPLQAEPGTIRGD 185          
BLAST of EY710542 vs. ExPASy Swiss-Prot
Match: NDK1_SPIOL (Nucleoside diphosphate kinase 1 OS=Spinacia oleracea GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 1.377e-27
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 3
Query:  303 VEETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVGASARKL*GSTDPPQAEPGKIKGD 614
            +E+T+IM+KPDGVQRGLVGEIISRFE               +  AE+HY DL++KPFF  L+EYI SGPVV M WEG GV A+ RKL G+T+P  +EPG I+GD
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIISRFEKKGFSLKALKFVNVDRPFAEKHYADLSAKPFFNGLVEYIVSGPVVAMVWEGKGVVATGRKLIGATNPLASEPGTIRGD 104          
BLAST of EY710542 vs. ExPASy Swiss-Prot
Match: NDK_ANAVT (Nucleoside diphosphate kinase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.799e-27
Identity = 61/106 (57.55%), Postives = 74/106 (69.81%), Query Frame = 3
Query:  303 VEETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVGASARKL*GSTDPPQAEPGKIKGDPG 620
            +E T++ +KPDGVQRGLVGEII RFE            Q  K+LAE+HY     +PFFP L+E+ITSGPVV M WEG GV ASARK+ G+T+P  AEPG I+GD G
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLQVSKELAEQHYGVHRERPFFPSLVEFITSGPVVAMVWEGDGVIASARKIIGATNPLTAEPGTIRGDFG 106          
BLAST of EY710542 vs. ExPASy Swiss-Prot
Match: NDK_ANASP (Nucleoside diphosphate kinase OS=Anabaena sp. (strain PCC 7120) GN=ndk PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.799e-27
Identity = 61/106 (57.55%), Postives = 74/106 (69.81%), Query Frame = 3
Query:  303 VEETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVGASARKL*GSTDPPQAEPGKIKGDPG 620
            +E T++ +KPDGVQRGLVGEII RFE            Q  K+LAE+HY     +PFFP L+E+ITSGPVV M WEG GV ASARK+ G+T+P  AEPG I+GD G
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLQVSKELAEQHYGVHRERPFFPSLVEFITSGPVVAMVWEGDGVIASARKIIGATNPLTAEPGTIRGDFG 106          
BLAST of EY710542 vs. ExPASy Swiss-Prot
Match: NDK_CYAP4 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndk PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.068e-27
Identity = 60/106 (56.60%), Postives = 73/106 (68.87%), Query Frame = 3
Query:  303 VEETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVGASARKL*GSTDPPQAEPGKIKGDPG 620
            +E T++ VKPDGVQR LVGEII RFE               KDLAE+HY +   KPFFP L+++ITSGPVV M WEG GV ASARK+ G+T+P  +EPG I+GD G
Sbjct:    1 MERTFLAVKPDGVQRALVGEIIRRFEAKGFKLVGLKLMNVSKDLAEQHYGEHKEKPFFPGLVQFITSGPVVAMVWEGKGVVASARKIIGATNPLNSEPGTIRGDYG 106          
BLAST of EY710542 vs. ExPASy Swiss-Prot
Match: NDK1_MESCR (Nucleoside diphosphate kinase 1 OS=Mesembryanthemum crystallinum GN=NDKP1 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 8.928e-27
Identity = 58/104 (55.77%), Postives = 73/104 (70.19%), Query Frame = 3
Query:  303 VEETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVGASARKL*GSTDPPQAEPGKIKGD 614
            +E+T+IM+KPDGVQRGLVGEIISRFE               +  AE+HY DL++KPFF  L+EYI SGPVV M WEG GV  + RK+ G+T+P  +EPG I+GD
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIISRFEKKGFSLKALKFINVDRPFAEKHYADLSAKPFFNGLVEYIVSGPVVAMVWEGKGVVLTGRKIIGATNPLASEPGTIRGD 104          
BLAST of EY710542 vs. ExPASy Swiss-Prot
Match: NDK_CYAA5 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain ATCC 51142) GN=ndk PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.989e-26
Identity = 61/108 (56.48%), Postives = 72/108 (66.67%), Query Frame = 3
Query:  303 VEETYIMVKPDGVQRGLVGEIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVGASARKL*GSTDPPQAEPGKIKGDPGGS 626
            +E T+IM+KPDGVQRGLVGE+I RFE               K+LAEEHY     +PFF  L+E+I S PVV M WEG GV ASARKL G+T+P  AEPG I+GD G S
Sbjct:    1 MERTFIMIKPDGVQRGLVGEVIGRFEAKGFTLVGLKLMSVSKELAEEHYDVHKERPFFGSLVEFICSSPVVAMVWEGDGVVASARKLIGATNPLSAEPGTIRGDFGVS 108          
The following BLAST results are available for this feature:
BLAST of EY710542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 498
Match NameE-valueIdentityDescription
NDK2_ARATH2.333e-5168.55Nucleoside diphosphate kinase II, chloroplastic OS... [more]
NDK2_TOBAC1.672e-4960.23Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_SPIOL1.849e-4857.38Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK2_PEA7.767e-4756.83Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK1_SPIOL1.377e-2757.69Nucleoside diphosphate kinase 1 OS=Spinacia olerac... [more]
NDK_ANAVT1.799e-2757.55Nucleoside diphosphate kinase OS=Anabaena variabil... [more]
NDK_ANASP1.799e-2757.55Nucleoside diphosphate kinase OS=Anabaena sp. (str... [more]
NDK_CYAP43.068e-2756.60Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]
NDK1_MESCR8.928e-2755.77Nucleoside diphosphate kinase 1 OS=Mesembryanthemu... [more]
NDK_CYAA51.989e-2656.48Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-024-D06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710542 ID=EY710542; Name=EY710542; organism=Citrus sinensis; type=EST; length=1024bp
GGACCGCGGTACGCGTCCGGATTCCGGGTCGACCACGCGTCCGGAGAGAG
AGAGAGATGGAGGGTGTAGGTGCGTTAGGTGTGTCATCATCACCAACTCT
TGTTGGCAAGATAAGTTGCAGCAGACGCTTATCCTACAGCTCCAACAAGC
TTACCCTACGCACCACCAGCCACCTTGCAGCATTCCACTCACAGTCCCGT
CTTTTCGTAAAACCCCCATCATGTCGTCGCCGCAGAACCGTTGCTCGCAA
CTCCAACGAAACCGGCATCTTCCTTCCCCACTTGGTCGCTTCCATGGAAC
AAGTTGAGGAGACTTACATTATGGTGAAACCAGATGGTGTTCAACGTGGT
CTGGTTGGCGAAATTATTTCAAGGTTTGAGAAGAAGGGATTCAAACTGAT
TGGCTTGAAGCTCTTTCAATGCCCGAAAGATTTAGCTGAGGAGCACTATA
AGGATCTCAATTCCAAACCATTTTTTCCTAAACTGATTGAGTACATTACT
TCAGGACCAGTTGTATGTATGGCATGGGAGGGTGCTGGTGTGGGAGCATC
TGCACGTAAGTTATAAGGGTCAACAGATCCCCCTCAAGCTGAACCAGGCA
AAATAAAAGGGGATCCTGGCGGTTCAAACTGGGAAGGAAGGGGGGCCATG
GGGAGTGGAAGCCCTGGAAAAGGGCAAGGGGGGAAATAGGGCCCGGGGGG
TCAAAAAAAGGGGGAAGTTGGGGGCCGGGGGAAACCCGCCTCCAAGCCCC
GGGGGTTAAAGGGGAATAAAAAATTCCAACCAAAAACTTTAAAAATAGGG
GGGGGGGGGCAACCTTTTTTGAAAAAAATTTCCCCTTTTCGAGAAAAAAA
AATAAATTTTGGAAAATTTATACAAAAAAAAATTTTTTTTTGGGGTTTGG
GGGGGTGTTTTTTATAAAATATTTTACAAAGGGGGGGGAAAAAAACCCCC
CGCCGAAGGAGGAAAAAAAAGACGCGCCTTTTTTTTTTTTGTGGGGGGGG
GGGAGAAAAAACAAAAAAAAAAAC
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