EY710534

Overview
NameEY710534
Unique NameEY710534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1030
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710534 vs. ExPASy Swiss-Prot
Match: RPT3_ARATH (Root phototropism protein 3 OS=Arabidopsis thaliana GN=RPT3 PE=1 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.131e-61
Identity = 125/181 (69.06%), Postives = 143/181 (79.01%), Query Frame = 1
Query:    1 RLCRVMDCQKLSIDACMHAAQNERLPLRIVVQVLFSEQIKISNAMANSTLKEA---GESQ--YQPMISNRKSLLEATPQSFQEGWATAKKDINTLKFELESVKAKYLELQNDMETLQRQFDKLTKQKQT---SAWTSGWKKLGKLTKMTATDHQDIRPQVPNAA--EQTRKTPRRWRNSIS 513
            RLCRVMDCQKLS+DACMHAAQNERLPLR+VVQVLFSEQ+KISNA+AN++LKE+   GE+   YQPMI NRK+L+EATPQSFQ  WA AKKDINTLKFELE+VK KY+ELQN+ME +QRQF+K  K K T   SAWTSGWKKL KLTKM+  +  DI      A       + PRRWRNSIS
Sbjct:  565 RLCRVMDCQKLSMDACMHAAQNERLPLRVVVQVLFSEQVKISNALANTSLKESTTLGEAMGTYQPMIPNRKTLIEATPQSFQARWAAAKKDINTLKFELETVKTKYVELQNEMEVMQRQFEKTGKVKNTPSSSAWTSGWKKLSKLTKMSGQESHDISSGGEQAGVDHPPPRKPRRWRNSIS 745          
BLAST of EY710534 vs. ExPASy Swiss-Prot
Match: NPH3_ORYSJ (Coleoptile phototropism protein 1 OS=Oryza sativa subsp. japonica GN=CPT1 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.638e-52
Identity = 116/197 (58.88%), Postives = 136/197 (69.04%), Query Frame = 1
Query:    1 RLCRVMDCQKLSIDACMHAAQNERLPLRIVVQVLFSEQIKISNAMANSTL------KEAGESQYQPMISNRKSLLEATPQSFQEGWATAKKDINTLKFELESVKAKYLELQNDMETLQRQFD------------KLTKQKQ----TSAWTSGWKKLGKLTKMTATDHQ---DIRPQVPNAAE-QTRKTPRRWRNSIS 513
            RLCRVMDCQKLS DACMHAAQNERLPLR+VVQVLF+EQ+KISNA+A+S+          G      M + R+ LL+ TPQSFQEGWA AKKDINTLKFELES+KAKYLELQ++M+ LQ+Q D            K+ KQ+Q     SAW+SGWKKLG+L KM+  D      + P  P   E   RK PRRWRNSIS
Sbjct:  568 RLCRVMDCQKLSFDACMHAAQNERLPLRVVVQVLFTEQVKISNALASSSAALRSSSSAPGADAAPAMPTTRRQLLDGTPQSFQEGWAAAKKDINTLKFELESMKAKYLELQHEMDALQKQVDGRGGGAPSPAAAKIGKQQQQGTSASAWSSGWKKLGRLAKMSGADAAAGGGVAP--PGGGEAAARKGPRRWRNSIS 762          
BLAST of EY710534 vs. ExPASy Swiss-Prot
Match: Y1044_ARATH (BTB/POZ domain-containing protein At1g30440 OS=Arabidopsis thaliana GN=At1g30440 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 1.109e-16
Identity = 54/151 (35.76%), Postives = 82/151 (54.30%), Query Frame = 1
Query:    4 LCRVMDCQKLSIDACMHAAQNERLPLRIVVQVLFSEQIKISNAMANSTL----KEAGESQYQPMISNRKSLLEATPQ---SFQEGWATAKKDINTLKFELESVKAKYLELQNDMETLQRQFDKLTKQKQ----------TSAWTSGWKKLG 405
            LCR++DCQKLS++AC HAAQNERLPLRI+VQVLF EQ+++  ++A   L     + G  Q       R       P        GWATA ++   LK  ++S++ +  EL+ +   ++++ +KL K  +          +  W +  KKLG
Sbjct:  470 LCRLLDCQKLSLEACTHAAQNERLPLRIIVQVLFFEQLQLRTSVAGCFLVSDNLDGGSRQL------RSGGYVGGPNEGGGGGGGWATAVRENQVLKVGMDSMRMRVCELEKECSNMRQEIEKLGKTTKGGGSASNGVGSKTWENVSKKLG 614          
BLAST of EY710534 vs. ExPASy Swiss-Prot
Match: Y5880_ARATH (BTB/POZ domain-containing protein At5g48800 OS=Arabidopsis thaliana GN=At5g48800 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.164e-12
Identity = 47/140 (33.57%), Postives = 85/140 (60.71%), Query Frame = 1
Query:    1 RLCRVMDCQKLSIDACMHAAQNERLPLRIVVQVLFSEQIKISNAMANSTLKEAGESQYQPMISNR--KSLLEATPQSFQEGWATAKKDINTLKFELESVKAKYLELQNDMETLQRQFDKLTKQKQTSAWTSGWKKLGKLT 414
            +L +++D QKLS +A  HAAQNERLPL+ +VQVL+ EQ+K+ +++ +S   E  + + Q   S R     L AT  S ++ +A+ +++   LK EL  ++ +  +L+ +   ++R   +   +K  S+++   KK+GKL+
Sbjct:  445 KLSKLIDFQKLSQEAGAHAAQNERLPLQSIVQVLYFEQLKLRSSLCSSYSDEEPKPKQQQQQSWRINSGALSAT-MSPKDNYASLRRENRELKLELARLRMRLNDLEKEHICMKRDMQRSHSRKFMSSFS---KKMGKLS 580          
The following BLAST results are available for this feature:
BLAST of EY710534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RPT3_ARATH1.131e-6169.06Root phototropism protein 3 OS=Arabidopsis thalian... [more]
NPH3_ORYSJ1.638e-5258.88Coleoptile phototropism protein 1 OS=Oryza sativa ... [more]
Y1044_ARATH1.109e-1635.76BTB/POZ domain-containing protein At1g30440 OS=Ara... [more]
Y5880_ARATH2.164e-1233.57BTB/POZ domain-containing protein At5g48800 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-024-C09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710534 ID=EY710534; Name=EY710534; organism=Citrus sinensis; type=EST; length=1030bp
CGTCTCTGCCGTGTGATGGATTGCCAGAAACTGTCGATTGATGCTTGCAT
GCATGCCGCACAAAATGAAAGACTACCCCTAAGGATTGTAGTTCAAGTCC
TTTTCTCTGAGCAGATAAAGATTAGCAATGCTATGGCCAACAGCACCCTG
AAAGAAGCTGGAGAAAGTCAATACCAGCCAATGATATCAAACAGAAAATC
TCTACTTGAAGCGACACCACAGTCATTCCAAGAAGGATGGGCAACTGCTA
AGAAGGACATTAACACACTCAAATTTGAGCTAGAGAGTGTCAAGGCTAAG
TATCTTGAACTTCAAAATGACATGGAGACTCTACAGAGACAGTTTGATAA
GTTGACAAAGCAGAAACAAACTTCGGCATGGACTAGCGGGTGGAAGAAAC
TGGGCAAACTCACCAAGATGACAGCTACAGATCACCAGGATATAAGACCG
CAGGTTCCGAATGCTGCAGAACAGACGAGAAAAACACCTAGAAGATGGAG
AAATTCAATTTCTTGAACTCTGGAGTAACAAGCCAAGGACTGTCTTTTAA
TTTGGATTCTGTATTTCATTTGGTTTATTTTAATCTACTCTCAATCATGG
TTTTTAAAGCAATTTTCTACCCCCCAGAAGAAGAATTAAGAAAAAAAGAA
AAAAAGGGACGGCCNTTNNAAAAAAAAAAAAAAAAAAAATAAAAAAAAAA
AAAAAAGANAAAAAAATAATATATATAAAAATATTTTATTATAAATTTAA
TGGGGGGGGGGCCGCTCTAGGGGGTTCCAGGTGTTAAGGGAGGCGGGGGC
TTGGCGGACGCCCCCCCCTTTTAAAAAAAGGGGCCACCTCATATTTTTGG
TTTCCCGGGGGGCACATTTATTTTTAAAACCGGTGCGGGGGAGGGGGGGA
AAAACCCGGTGTGGCGGATTTACCCTATTTTTTTTTACGCCCGTATAGCC
CCCCCACTCCCCCCCCCCCTTTTTCCCCGCCCCCCCGCGGGAGGAGAAGA
GAAAGAAAAGAGAAGGAAAAAGAGAAGAGG
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