EY710525

Overview
NameEY710525
Unique NameEY710525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1063
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710525 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 2.173e-36
Identity = 84/174 (48.28%), Postives = 107/174 (61.49%), Query Frame = 3
Query:  135 MATAVAASSFVSRSYGHEVASGLNSKASQMKFR--CMKHSGLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKNAWDTDVVIELKVGDKIEKVRFFHCPKRGIDRVFVESPWF 650
            MA+  A+  FVSRS   + +    S  SQ+  R   + H+GLR++N +D LQ +T      T + A R   + + G S  IVCG G+N++FVGTEV PWSKT                  HRVMTI+PRYDQYK+AWDT V +E+KVGD IE VRFFHC KRG+DRVFV+ P F
Sbjct:    1 MASITASHHFVSRS---QTSLDTKSTLSQIGLRNHTLTHNGLRAVNKLDGLQSRTNTK--VTPKMASRTETK-RPGCSATIVCGKGMNLIFVGTEVGPWSKTGGLGDVLGGLPPALAARGHRVMTISPRYDQYKDAWDTSVAVEVKVGDSIEIVRFFHCYKRGVDRVFVDHPMF 168          

HSP 2 Score: 24.6386 bits (52), Expect = 2.173e-36
Identity = 20/52 (38.46%), Postives = 26/52 (50.00%), Query Frame = 1
Query:  673 TQSKILGPKNGKEYQKHPFSLSAGWGREPFETPRKIYNLKHQQKYFPGAPWG 828
            T SKI GPK G +Y  +    S    +   E P K+ NL +   YF G P+G
Sbjct:  176 TGSKIYGPKAGLDYLDNELRFSL-LCQAALEAP-KVLNL-NSSNYFSG-PYG 223          
BLAST of EY710525 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.383e-35
Identity = 84/177 (47.46%), Postives = 108/177 (61.02%), Query Frame = 3
Query:  135 MATAVAASSFVSRSYGHEVASGLNSKASQMKF-----RCMKHSGLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKNAWDTDVVIELKVGDKIEKVRFFHCPKRGIDRVFVESPWF 650
            MAT +AA  FVSRS  H     L +KA+ +       + +  +GLRSLN +D+LQ+KT  SK      A  NG      P+  I+CG G+N++FVG EV PWSKT                  HRVMT++PRYDQYK+AWDT V +E+K+GD+IE VRFFH  KRG+DRVFV+ P F
Sbjct:    1 MATVIAAH-FVSRS-SHLSIHALETKANNLSHTGPWTQTITPNGLRSLNTMDKLQMKTQ-SKAVKKVSATGNG-----RPAAKIICGHGMNLIFVGAEVGPWSKTGGLGDVLGGLPPAMAARGHRVMTVSPRYDQYKDAWDTSVSVEIKIGDRIETVRFFHSYKRGVDRVFVDHPMF 169          

HSP 2 Score: 24.2534 bits (51), Expect = 1.383e-35
Identity = 22/59 (37.29%), Postives = 31/59 (52.54%), Query Frame = 1
Query:  673 TQSKILGPKNGKEYQKHPFSLSAGWGREPFETPRKIYNLKHQQKYFPGAPWGGKKAAFL 849
            T SKI GP+ G +YQ +    S        E PR + NL +  K F G P+ G++ AF+
Sbjct:  177 TGSKIYGPRAGLDYQDNQLRFSL-LCLAALEAPR-VLNL-NSSKNFSG-PY-GEEVAFI 230          
BLAST of EY710525 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.231e-34
Identity = 80/175 (45.71%), Postives = 110/175 (62.86%), Query Frame = 3
Query:  135 MATAVAASSFVSRS--YGHEVASGLNSKAS-QMKFRCMKHSGLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKNAWDTDVVIELKVGDKIEKVRFFHCPKRGIDRVFVESPWF 650
            MAT  A+S+FVSR+  + +  AS  +  A   +K + + H GLRS N++D LQ ++ A K  +++ + R+      G    IVC  G++++F+G EV PWSKT                  HRVMTI PRYDQYK+AWDT VV+++KVGDK+E VRFFHC KRG+DRVFV+ P F
Sbjct:    1 MATVTASSNFVSRTSLFNNHGASSCSDVAQITLKGQSLTHCGLRSFNMVDNLQRRSQA-KPVSAKSSKRSSKVKTAGK---IVCEKGMSVIFIGAEVGPWSKTGGLGDVLGGLPPALAARGHRVMTICPRYDQYKDAWDTCVVVQIKVGDKVENVRFFHCYKRGVDRVFVDHPIF 171          
BLAST of EY710525 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 6.111e-34
Identity = 101/261 (38.70%), Postives = 140/261 (53.64%), Query Frame = 3
Query:  135 MATAVAASSFVSRSYGHEVAS-GLNSKASQMKFRCMK--HSGLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKNAWDTDVVIELKVGDKIEKVRFFHCPKRGIDRVFVESPWFPGEGGGENPIQNLGA*EWKGIPETPIFPFSWLGPGAL*NPPKNL*S*TPTKIFSRGPMGGKKGSFFVGQRTGAILPPYTPVVHWEK 908
            MAT V AS  VS  +G   +S    +  +Q+  R  +  H+GLRS+N++D+LQ++  A +  +  +   NG      P   I+CG G+N++FV  EV PWSKT                  HRVMT++PRYDQYK+AWDT VV+E+KVGD IE VRFFHC KRG+DRVFV+ P F  +  G+   +  G        +  +  FS L   AL  P   + + T +K FS GP  G+   F       A+LP Y   ++  K
Sbjct:    1 MAT-VTASQLVSHVHGGATSSPDTKTNLAQVGLRNQQFTHNGLRSINMVDKLQMRNNAKQSRSLVKKTDNG-----SPLGKIICGTGMNLVFVLAEVGPWSKTGGLGDVVGGLPPAMAGNGHRVMTVSPRYDQYKDAWDTSVVVEIKVGDSIETVRFFHCYKRGVDRVFVDHPIFLEKVWGKTKSKIYGPNAGTDYQDNQL-RFSLLCQAALEAP--RVLNLTSSKYFS-GPY-GEDVVFVANDWHTALLPCYLKSMYQSK 250          
BLAST of EY710525 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 3.831e-32
Identity = 80/176 (45.45%), Postives = 102/176 (57.95%), Query Frame = 3
Query:  135 MATAVAASSFVSRSYGHEVASGLNSKASQMKFR--CMKHSGLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSL-MIVCGV-GLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKNAWDTDVVIELKVGDKIEKVRFFHCPKRGIDRVFVESPWF 650
            MAT + AS FVS   G   +        Q+  R   + H+GLR +N ID LQ++T A K        +NG  ++ G +   IVC   G+N++FVG EV PW KT                  HRVMT+ PRYDQYK+AWDT VV+EL+VGD+IE VRFFH  KRG+DRVFV+ P F
Sbjct:    1 MAT-ITASHFVSHVCGGATSGESKVGLGQLALRSQAVTHNGLRPVNKIDMLQLRTSAKK------PSKNGRENEGGMAAGTIVCKQQGMNLVFVGCEVGPWCKTGGLGDVLGGLPPALAARGHRVMTVCPRYDQYKDAWDTCVVVELQVGDRIEPVRFFHSYKRGVDRVFVDHPMF 169          

HSP 2 Score: 25.409 bits (54), Expect = 3.831e-32
Identity = 19/52 (36.54%), Postives = 27/52 (51.92%), Query Frame = 1
Query:  673 TQSKILGPKNGKEYQKHPFSLSAGWGREPFETPRKIYNLKHQQKYFPGAPWG 828
            T S + GPK GK+Y+ +    S    +   E PR + NL +   YF G P+G
Sbjct:  177 TGSMLYGPKAGKDYKDNQLRFSL-LCQAALEAPR-VLNL-NSSNYFSG-PYG 224          
BLAST of EY710525 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.722e-28
Identity = 60/126 (47.62%), Postives = 77/126 (61.11%), Query Frame = 3
Query:  273 DELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKNAWDTDVVIELKVGDKIEKVRFFHCPKRGIDRVFVESPWF 650
            D L ++T A      + A R G R    PSL++    G+N++FVG E+APWSKT                  HRVM ++PRYDQYK+AWDT VV E+K+GD  E VRFFHC KRG+DRVF++ P F
Sbjct:   44 DALSMRTSACPAPRQQPAARRGGRGGRFPSLVVCATAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVVSPRYDQYKDAWDTSVVSEIKMGDGYETVRFFHCYKRGVDRVFIDHPLF 169          
BLAST of EY710525 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.837e-28
Identity = 63/134 (47.01%), Postives = 80/134 (59.70%), Query Frame = 3
Query:  249 GLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKNAWDTDVVIELKVGDKIEKVRFFHCPKRGIDRVFVESPWF 650
            G R+    D L ++T A      +Q  R G R    PSL++    G+N++FVG E+APWSKT                  HRVM ++PRYDQYK+AWDT VV E+K+GD  E VRFFHC KRG+DRVFV+ P F
Sbjct:   34 GARASAAADTLSMRTSARAAPRHQQQARRGGRF---PSLVVCASAGMNVVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVVSPRYDQYKDAWDTSVVSEIKMGDGYETVRFFHCYKRGVDRVFVDHPLF 164          
BLAST of EY710525 vs. ExPASy Swiss-Prot
Match: SSG1_HORVU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Hordeum vulgare GN=WAXY PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.248e-27
Identity = 65/145 (44.83%), Postives = 88/145 (60.69%), Query Frame = 3
Query:  225 KFRCMKHSGLRSLNIIDE-LQVKTMASKLAT--SRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKNAWDTDVVIELKVGDKIEKVRFFHCPKRGIDRVFVESPWF 650
            +FR     GLR  N  D  L ++T+ +  A   SR+A R   R  +   ++   G G+N++FVG E+APWSKT                  HRVM ++PRYDQYK+AWDT V+ E+KV D+ E+VRFFHC KRG+DRVF++ PWF
Sbjct:   21 RFRRPGFQGLRPRNPADAALGMRTIGASAAPKQSRKAHRGSRRCLS--VVVSATGSGMNLVFVGAEMAPWSKTGGLGDVLGGLPPAMAANGHRVMVVSPRYDQYKDAWDTSVISEIKVADEYERVRFFHCYKRGVDRVFIDHPWF 163          
BLAST of EY710525 vs. ExPASy Swiss-Prot
Match: SSG1_PEA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.234e-26
Identity = 66/134 (49.25%), Postives = 85/134 (63.43%), Query Frame = 3
Query:  249 GLRSLNIIDELQVKTMASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKNAWDTDVVIELKVGDKIEKVRFFHCPKRGIDRVFVESPWF 650
            GLRSLN   +L V+T  +   +S  + ++  +        IVCG+ L  +FVG EV PWSKT                  HRVMT++PRYDQYK+AWDT+V++E+KVGDKIE VRFFHC KRG+DRVFV+ P F
Sbjct:   44 GLRSLN---KLHVRTARATSGSSDTSEKSLGK--------IVCGMSL--VFVGAEVGPWSKTGGLGDVLGGLPPVLAGNGHRVMTVSPRYDQYKDAWDTNVLVEVKVGDKIETVRFFHCYKRGVDRVFVDHPLF 164          
BLAST of EY710525 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.750e-26
Identity = 60/119 (50.42%), Postives = 75/119 (63.03%), Query Frame = 3
Query:  294 MASKLATSRQAGRNGFRSQNGPSLMIVCGVGLNILFVGTEVAPWSKTXXXXXXXXXXXXXXXXXXHRVMTIAPRYDQYKNAWDTDVVIELKVGDKIEKVRFFHCPKRGIDRVFVESPWF 650
            +A + AT+ +  RN  R+    S  IVC  G+ I+FV TEV PW KT                  HRVMTIAPRYDQYK+ WDT+V++E+ VGD+ E VRFFHC KRG+DRVFV+ P F
Sbjct:   11 LAKRRATNYETHRNSSRT----SSPIVCSTGMPIIFVATEVHPWCKTGGLGDVVGGLPPALAAMGHRVMTIAPRYDQYKDTWDTNVLVEVIVGDRTETVRFFHCYKRGVDRVFVDHPMF 125          
The following BLAST results are available for this feature:
BLAST of EY710525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
SSG1_SOLTU2.173e-3648.28Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MANES1.383e-3547.46Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ARATH1.231e-3445.71Probable granule-bound starch synthase 1, chloropl... [more]
SSG1_ANTMA6.111e-3438.70Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_IPOBA3.831e-3245.45Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SORBI1.722e-2847.62Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MAIZE3.837e-2847.01Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_HORVU3.248e-2744.83Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_PEA1.234e-2649.25Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1B_HORVU2.750e-2650.42Granule-bound starch synthase 1b, chloroplastic/am... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-024-B12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710525 ID=EY710525; Name=EY710525; organism=Citrus sinensis; type=EST; length=1063bp
CCGTCGGACGGTCGGGATTCCGGGTCGACCCACGCGTCCGCGTTCATTCA
TAGACGCTTGAGCACCAGATTTCATCAGGAAACTAAGAGGGAAACAAATC
TTCAGCAGAGACTACAAACATAATAATATCAGCTATGGCTACCGCTGTAG
CCGCTTCAAGCTTCGTCTCAAGGAGTTATGGACATGAGGTAGCTTCAGGA
TTGAATAGTAAGGCATCACAGATGAAATTTAGGTGTATGAAGCACAGTGG
GCTGAGAAGTTTAAATATCATAGACGAACTCCAAGTGAAAACAATGGCAT
CAAAACTAGCCACCAGCAGGCAAGCTGGGAGGAATGGATTTAGAAGCCAG
AACGGGCCATCCTTAATGATTGTTTGTGGGGTTGGCCTGAATATCCTCTT
TGTTGGAACAGAGGTTGCTCCTTGGAGTAAAACTGGGGGACTTGGTGATG
TTCTTGGAGGTCTGCCACCAGCACTGGCCGCCAATGGGCACCGTGTCATG
ACGATTGCACCCCGATATGACCAGTACAAAAATGCTTGGGATACTGATGT
TGTAATTGAGCTGAAAGTTGGAGACAAAATTGAAAAAGTTCGCTTCTTTC
ATTGCCCCAAGAGAGGAATTGATCGGGTGTTTGTGGAATCTCCTTGGTTT
CCTGGGGAAGGGGGGGGGGAAAACCCAATCCAAAATCTTGGGGCCTAAGA
ATGGAAAGGAATACCAGAAACACCCATTTTCCCTTTCAGCTGGTTGGGGC
CGGGAGCCCTTTGAAACCCCCCGAAAAATTTATAATCTTAAACACCAACA
AAAATATTTTCCCGGGGCCCCATGGGGGGGAAAAAAGGCAGCTTTTTTGT
GGGGCAAAGGACGGGGGCAATACTCCCCCCTTATACCCCTGTGGTACACT
GGGAAAAAACTAATGTGAAAAGACCCCCACGAGGGGGGGAAGGGAAAAAA
AAGAGGGGGCCAAAAATGTTTGTTTTTTTATTGTTGGGCCTCCCCAACAA
TTTTTTATGTTTATTCCCCCCACAGGGGGAAAAAAATATTTTTTGTTTTG
ATTTGTTGGAGGA
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