EY710517

Overview
NameEY710517
Unique NameEY710517
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1003
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710517 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 9.342e-37
Identity = 78/172 (45.35%), Postives = 108/172 (62.79%), Query Frame = 1
Query:   13 FSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 528
            F+S+Y S K AK++ D  T  ++GYGFVRF DEN++  A+ EM G  C  RP+R+ +ATPK  S          + ++  P    +  Q      ++ N+T+FVG L   VS+E+L+  F  FGEI+ VKIP GKGCGFVQF NR+ AE+A+ +LQG  +G   +RLSWGRN
Sbjct:  206 FASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPK--SKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375          
BLAST of EY710517 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 9.048e-32
Identity = 74/172 (43.02%), Postives = 101/172 (58.72%), Query Frame = 1
Query:   13 FSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 528
            F S YPS   AK+I+D  TG ++ YGFVRF  E E+  A+  M G  C  RP+RI VA+PK  +         AL +     SN    Q   S  +  N T+FVG L S++S++DL+  F  FG IL++KIP GKGCGFVQ++ +  AE A+  +QG  +G   +RL+WG N
Sbjct:  202 FRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRASIAADS---ALGIVPTSTSNRQPNQDLCSM-DPLNTTVFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHN 369          
BLAST of EY710517 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 3.682e-25
Identity = 70/203 (34.48%), Postives = 106/203 (52.22%), Query Frame = 1
Query:   13 FSSKYPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPK-----------KASGXXXXXXXXALVLAGGPG--SNGARVQGSQSDGES------------------NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRN 528
            F ++Y S   AK++ D  TG +KGYGFV+F + +E+  A++EM GV+ + R +++   + +           ++S         +  L+ G    SNG    G + +  S                  NN T+F+G L S V++++LR  F  FG I+ VKIPVGK CGFVQ+ +R  AE A+  +QG  I    VRLSWGR+
Sbjct:  183 FINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQQHVSGNNDYNRSSSSLNNENVDSRFLSKGQSFLSNGNNNMGFKRNHMSQFIYPVQQQPSLNHFTDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRS 385          
BLAST of EY710517 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.222e-17
Identity = 58/180 (32.22%), Postives = 89/180 (49.44%), Query Frame = 1
Query:   34 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR-NPGNKQWRG 552
            V GA+VI +  T R++GYG+V F +++   +A+ EM G     RP+  D++T K                   P  N  R +         + T+F+G L  +   + + E F++ GE++SV+IP        KG G+VQF+N +DA+ AL  LQG  I  + VRL +    P N   RG
Sbjct:  194 VIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSK-------------------PAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNNDGGRG 354          
BLAST of EY710517 vs. ExPASy Swiss-Prot
Match: TIAR_MOUSE (Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.960e-16
Identity = 47/185 (25.41%), Postives = 88/185 (47.57%), Query Frame = 1
Query:   25 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQWRGDHSNHWKWG 579
            +  +  A+V+ D  TG++KGYGFV F ++ +   A+  M G +   R +R + AT K  +                  +   R +   +     N T++ G + S ++D+ +R+ FS FG+I+ +++   KG  FV+F+  + A  A+  + GT I    V+  WG+   +        ++ +WG
Sbjct:  137 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQET----------NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWG 311          
BLAST of EY710517 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.960e-16
Identity = 47/185 (25.41%), Postives = 88/185 (47.57%), Query Frame = 1
Query:   25 YPSVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGRNPGNKQWRGDHSNHWKWG 579
            +  +  A+V+ D  TG++KGYGFV F ++ +   A+  M G +   R +R + AT K  +                  +   R +   +     N T++ G + S ++D+ +R+ FS FG+I+ +++   KG  FV+F+  + A  A+  + GT I    V+  WG+   +        ++ +WG
Sbjct:  120 FGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQEN----------NTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMTKNFQQVDYSQWG 294          
BLAST of EY710517 vs. ExPASy Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.551e-15
Identity = 53/191 (27.75%), Postives = 96/191 (50.26%), Query Frame = 1
Query:   34 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQ--SDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR------NPGNKQWR-GDHSNHWKWG 579
            +  A+V+ D  TG++KGYGFV F ++ +   A+ +M G +   R +R + AT K  +                  SN  ++   +  S    NN T++ G + S ++++ +R+ FS FG+I+ +++   KG  FV+F++ + A  A+  + GT I    V+  WG+      NP  +Q + G    + +WG
Sbjct:  132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE------------SNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPPTYGQWG 310          
BLAST of EY710517 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 2.239e-14
Identity = 38/76 (50.00%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  298 ESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR 525
            +  N T+FVG L    ++  LR  F  FG IL+V+IP GK CGFV+F  R DAE ++Q LQG  +G   +RLSWGR
Sbjct:  356 DPTNTTVFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGR 431          
BLAST of EY710517 vs. ExPASy Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 2.924e-14
Identity = 52/191 (27.23%), Postives = 96/191 (50.26%), Query Frame = 1
Query:   34 VKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVATPKKASGXXXXXXXXALVLAGGPGSNGARVQGSQSDGES--NNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPVGKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLSWGR------NPGNKQWR-GDHSNHWKWG 579
            +  A+V+ D  TG++KGYGFV F ++ +   A+ +M G +   R +R + AT K  +                  SN  ++   +   +S  +N T++ G + S ++++ +R+ FS FG+I+ +++   KG  FV+F + + A  A+  + GT I    V+  WG+      NP  +Q + G    + +WG
Sbjct:  132 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE------------SNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQNQIGYPQPYGQWG 310          
BLAST of EY710517 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.774e-11
Identity = 47/174 (27.01%), Postives = 82/174 (47.13%), Query Frame = 1
Query:   31 SVKGAKVIIDSNTGRTKGYGFVRFGDENERSRAMTEMNGVYCSSRPMRIDVA--TPKKASGXXXXXXXXALVLAGGP----GSNGARVQGSQSDGESNNATIFVGALDSDVSDEDLREPFSQFGEILSVKIPV------GKGCGFVQFANRKDAEVALQKLQGTAIGKQTVRLS 516
            +V+  +VI D  TGR++G+GFV     +E   A  + NG     RP+R++     PK+  G            + GP    GS+G+   G    G  +   ++VG L   V D  L   FS+ G+++  ++         KG GFV + + ++ + A++ L G  +  + +R+S
Sbjct:  116 NVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDG-----------FSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVS 278          
The following BLAST results are available for this feature:
BLAST of EY710517 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
YG41_SCHPO9.342e-3745.35Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
CSX1_SCHPO9.048e-3243.02RNA-binding post-transcriptional regulator csx1 OS... [more]
NAM8_YEAST3.682e-2534.48Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
NSR1_YEAST8.222e-1732.22Nuclear localization sequence-binding protein OS=S... [more]
TIAR_MOUSE6.960e-1625.41Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=... [more]
TIAR_HUMAN6.960e-1625.41Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
TIA1_MOUSE1.551e-1527.75Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=... [more]
NGR1_YEAST2.239e-1450.00Negative growth regulatory protein NGR1 OS=Sacchar... [more]
TIA1_HUMAN2.924e-1427.23Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=T... [more]
ROC1_ARATH1.774e-1127.01Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-024-B03-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710517 ID=EY710517; Name=EY710517; organism=Citrus sinensis; type=EST; length=1003bp
CCACGCGTCCGCTTTTCTAGTAAGTATCCATCTGTAAAAGGAGCCAAAGT
TATCATCGACTCGAATACTGGCCGTACAAAAGGTTACGGTTTTGTTAGAT
TTGGTGATGAAAATGAGAGGTCAAGGGCCATGACCGAAATGAATGGTGTG
TATTGTTCAAGTAGGCCGATGCGCATAGATGTTGCAACCCCCAAAAAGGC
TTCTGGATATCAACAACAGTATTCTTCACAAGCTCTTGTATTGGCTGGTG
GACCTGGGTCAAATGGTGCTAGGGTCCAAGGTTCTCAATCTGATGGCGAG
TCCAATAATGCGACTATATTTGTTGGGGCACTTGATTCTGATGTCAGTGA
TGAGGATCTCAGAGAGCCTTTTTCTCAGTTTGGTGAGATTCTTTCTGTTA
AAATACCTGTTGGTAAAGGATGTGGGTTTGTGCAATTTGCAAACAGAAAG
GATGCTGAGGTTGCATTGCAGAAGTTACAAGGGACCGCTATAGGCAAGCA
AACAGTCCGTCTTTCTTGGGGTCGCAATCCTGGGAACAAACAGTGGAGAG
GAGATCACAGTAACCACTGGAAATGGGGCACACTATGGAAGTCAGGGCTT
TAGTGGCAAATGGATATGCTTTTTCCGCCAAATCAAGATCCAAACTTGTA
TGCTGCAACAGCGGTTCCCGGGGGCTCTTTAAAAATATTGGGGGCAGTTC
GACCCCCGGGTAACTCGGAACTTGCTAAACTGGGGTAAAAATTACCCCAA
GGAAATCTTAGGAAACAAAAAAAAAGAGTGGAATTTTGGCGGCCGGAAAC
ATTGGTACCTAAAATCTTGGAATTTTTGGAAAAAATTTTTTGAACTCGGG
AGAAAAAAATTTTAAAAAACCTTTGGGGGAAAAGGGTGGGGAGGGGGGGT
TTGATTTTTTTTTTTTTTTTTTTTCTTTTTTCTTGGGGGGGGAAACTTCT
GGGTTTGTTGGAAAAAAGGGGGAATTTTGTTTTTTTTGTGTTTTTTGTGG
GTT
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