EY685146

Overview
NameEY685146
Unique NameEY685146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length854
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685146_ssr725 microsatellite EY685146_ssr725:725..736. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY685146 vs. ExPASy Swiss-Prot
Match: RL10_SOLME (60S ribosomal protein L10 OS=Solanum melongena GN=RPL10 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.236e-44
Identity = 82/93 (88.17%), Postives = 88/93 (94.62%), Query Frame = 1 
Query:   34 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYLGRTAGEGALHLRLTEHP 312
            MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKY+ ++AG+ A HLR+  HP
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHP 93
[Close]
BLAST of EY685146 vs. ExPASy Swiss-Prot
Match: RL10_EUPES (60S ribosomal protein L10 OS=Euphorbia esula GN=RPL10 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.236e-44
Identity = 83/93 (89.25%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:   34 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYLGRTAGEGALHLRLTEHP 312
            MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKY+ + AG+ A HLR+  HP
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKFAGKDAFHLRVRVHP 93
[Close]
BLAST of EY685146 vs. ExPASy Swiss-Prot
Match: RL10_VITRI (60S ribosomal protein L10 OS=Vitis riparia GN=RPL10 PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.754e-44
Identity = 82/93 (88.17%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:   34 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYLGRTAGEGALHLRLTEHP 312
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKY+ + AG+ A HLR+  HP
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKYAGKDAFHLRVRVHP 93
[Close]
BLAST of EY685146 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.596e-44
Identity = 81/93 (87.10%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:   34 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYLGRTAGEGALHLRLTEHP 312
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHLVSWEKENVSSEALEAARIACNKY+ + AG+ A HLR+  HP
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHP 93
[Close]
BLAST of EY685146 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 178.718 bits (452), Expect = 3.596e-44
Identity = 81/93 (87.10%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:   34 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYLGRTAGEGALHLRLTEHP 312
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEFP+CVHLVSWEKENVSSEALEAARIACNKY+ + AG+ A HLR+  HP
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMTKNAGKDAFHLRVRVHP 93
[Close]
BLAST of EY685146 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.367e-43
Identity = 80/93 (86.02%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:   34 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYLGRTAGEGALHLRLTEHP 312
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKY+ ++AG+ A HLR+  HP
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHP 93
[Close]
BLAST of EY685146 vs. ExPASy Swiss-Prot
Match: RL101_ARATH (60S ribosomal protein L10-1 OS=Arabidopsis thaliana GN=RPL10A PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.367e-43
Identity = 80/93 (86.02%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:   34 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYLGRTAGEGALHLRLTEHP 312
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFPFCVHLVSWEKENVSSEALEAARIACNKY+ ++AG+ A HLR+  HP
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHP 93
[Close]
BLAST of EY685146 vs. ExPASy Swiss-Prot
Match: RL102_ARATH (60S ribosomal protein L10-2 OS=Arabidopsis thaliana GN=RPL10B PE=2 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 3.044e-43
Identity = 79/93 (84.95%), Postives = 87/93 (93.55%), Query Frame = 1 
Query:   34 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYLGRTAGEGALHLRLTEHP 312
            MGRRPARCYRQIK KPYPKSR+CRGVPDPKIRIYDVGMK+KGVDEFP+CVHLVSWEKENVSSEALEAARIACNKY+ ++AG+ A HLR+  HP
Sbjct:    1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENVSSEALEAARIACNKYMVKSAGKDAFHLRIRVHP 93
[Close]
BLAST of EY685146 vs. ExPASy Swiss-Prot
Match: RL102_ORYSJ (60S ribosomal protein L10-2 OS=Oryza sativa subsp. japonica GN=SG12 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.511e-42
Identity = 79/93 (84.95%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:   34 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYLGRTAGEGALHLRLTEHP 312
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEF  CVHLVSWEKENV+SEALEAARIACNKY+ ++AG+ A HLR+  HP
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHP 93
[Close]
BLAST of EY685146 vs. ExPASy Swiss-Prot
Match: RL102_ORYSI (60S ribosomal protein L10-2 OS=Oryza sativa subsp. indica GN=SG12 PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.511e-42
Identity = 79/93 (84.95%), Postives = 86/93 (92.47%), Query Frame = 1 
Query:   34 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYLGRTAGEGALHLRLTEHP 312
            MGRRPARCYRQIKNKPYPKSR+CRGVPDPKIRIYDVGMKKKGVDEF  CVHLVSWEKENV+SEALEAARIACNKY+ ++AG+ A HLR+  HP
Sbjct:    1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEAARIACNKYMTKSAGKDAFHLRVRVHP 93
The following BLAST results are available for this feature:
BLAST of EY685146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL10_SOLME1.236e-4488.1760S ribosomal protein L10 OS=Solanum melongena GN=... [more]
RL10_EUPES1.236e-4489.2560S ribosomal protein L10 OS=Euphorbia esula GN=RP... [more]
RL10_VITRI2.754e-4488.1760S ribosomal protein L10 OS=Vitis riparia GN=RPL1... [more]
RL101_ORYSJ3.596e-4487.1060S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI3.596e-4487.1060S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL103_ARATH1.367e-4386.0260S ribosomal protein L10-3 OS=Arabidopsis thalian... [more]
RL101_ARATH1.367e-4386.0260S ribosomal protein L10-1 OS=Arabidopsis thalian... [more]
RL102_ARATH3.044e-4384.9560S ribosomal protein L10-2 OS=Arabidopsis thalian... [more]
RL102_ORYSJ1.511e-4284.9560S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]
RL102_ORYSI1.511e-4284.9560S ribosomal protein L10-2 OS=Oryza sativa subsp.... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-010-D01-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685146 ID=EY685146; Name=EY685146; organism=Citrus sinensis; type=EST; length=854bp
GAGAATAGCTGAGACCGAACACGAACGCTCGCCATGGGAAGAAGACCGGC
AAGGTGTTACCGCCAAATCAAGAACAAACCCTACCCAAAGTCCCGCTTTT
GCCGCGGTGTCCCCGATCCCAAGATCAGAATCTACGATGTCGGGATGAAG
AAGAAAGGCGTCGACGAGTTCCCCTTCTGCGTTCACCTCGTCAGTTGGGA
GAAGGAGAACGTGTCGAGCGAGGCCTTGGAAGCTGCCCGTATCGCTTGCA
ACAAGTACCTGGGCAGAACGGCCGGCGAGGGTGCTCTGCATTTGCGACTC
ACAGAGCACCCCCTTCCCTGGTCTGCGCGTCCACAAACGCGGGCCAGCCA
TCGGCCGAGCAAGGCCCGCGCGGCGACCACGCGCCCCCCCCGACGGGGGG
GGGGCGCCAGCGGCCGAGCGAGTAGCAGAACGCCAGAAGGAAGAGGGAAC
AGGAGGGGAACGCGGAGCACGCCCCGCCACGACGGAGCAGCCGGCCCGAC
AACCCGGACACCGCAGCCCCAGAGCACGCCCCCCGCGTGCCCACGCCGCG
ACAGACGGCGGGTGACCGCCGACACCGGGGGCGGAGACCACGCCCGGGCA
CGACCCGACGCGCCAAGACGCCGAAGACGAACCCAGACAACGAAGCCACG
CGCCTGGACAGCACGGATCGCAGCCACCCACGGCCAAACCAGCAGGACCG
CCGGAACGACCCCCCCCGGCCGAACGCCGCCGCCGCAGCGGAAGAGCAGA
GGCCCGGCGAGGCGAGGACGGCGCAGCGGCACCCTGCGCCGACGGTGCGC
AGTCAGGCATTGGCACACCCCCGCCCGCCCCCCGACGCACCGAACGGCAA
CCTC
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