EY685100

Overview
NameEY685100
Unique NameEY685100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length980
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685100_ssr236 microsatellite EY685100_ssr236:236..250. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY685100 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 7.096e-50
Identity = 110/177 (62.15%), Postives = 130/177 (73.45%), Query Frame = 1
Query:  145 RSGANQLSSVK--YLPSLRRNVNLSVRCTAXXXXXXXXXXXX-PTIPKAE---PQPP--KKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGKVAMLGLVA*DFTEFVKGAPLV 651
            RS  NQ +++   Y+P+LRRNV+L VR  A             PT P A    PQP   + P+MST FS++ AFSGPAPERINGRLAMIGFVAA+GVEI+KGQ +  QLS GGVAWFLGTSVLL++ASL+P F+GVSVESKS   M+SDAE WNG++AMLGLVA  FTEFVKG  LV
Sbjct:   20 RSRVNQFTNIPSVYIPTLRRNVSLKVRSMAEGEPKEQSKVAVDPTTPTASTPTPQPAYTRPPKMSTKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of EY685100 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 8.421e-35
Identity = 87/200 (43.50%), Postives = 124/200 (62.00%), Query Frame = 1
Query:   76 MAASLATQSMLASPVAARVTGIRRSGANQLSSVKY---LPSLRRNVNLSVRCTAXXXXXXXXXXXXP--TIPKAEPQPPKKPRMSTGFS-EVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGKVAMLGLVA*DFTEFVKGAPLVKL 657
            MA+S    ++ A     + T I R G N L   K    LP +RRN   +VR                  T        P +  ++T  + ++F+F G APERINGR AMIGFVAA+GVE++ G+DVF+Q+ +GGV WFL TS +L +A+L+P+++G+S E+K++GF  SDAE+WNG+ AM+GLVA  FTE+VKG PL+ +
Sbjct:    1 MASSTCYATIPAMSCRGQST-ITRFGPNNLFLGKQSYELPLMRRNAKFTVRSMREDNEKEEQQQQKQQQTHDGGPDLTPNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLINV 199          
BLAST of EY685100 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.941e-31
Identity = 73/133 (54.89%), Postives = 93/133 (69.92%), Query Frame = 1
Query:  265 PTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLS--DGGVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGKVAMLGLVA*DFTEFVKGAPLVKL 657
            PT   A P+P  K + +    +  AFSGPAPERINGRLAM+GFVAAL VE ++G  +  Q+     G+AWFL T+ + +VASL+PL +G SVESKS G  ++DAELWNG+ AMLGLVA   TEF+ GAP V +
Sbjct:  100 PTTIPAAPKPVTK-KANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFVNI 231          
BLAST of EY685100 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 7.377e-31
Identity = 84/191 (43.98%), Postives = 111/191 (58.12%), Query Frame = 1
Query:   88 LATQSMLASPVAARVTGIRRSGANQLSSVKYLPSLRRNVNLSVRCTAXXXXXXXXXXXXPTIPKAEPQPPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGKVAMLGLVA*DFTEFVKGAPLVKL 657
            +AT   ++S   A V  + RS A+   + + LP+L R   L VR               P+ P     PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNG+ AMLGLVA   TE + GAP + +
Sbjct:    1 MATMMSMSSFAGAAV--VPRSSASSFGA-RSLPALGRRA-LVVRAQTEG----------PSAP-----PPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFINV 172          
BLAST of EY685100 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.803e-30
Identity = 65/123 (52.85%), Postives = 84/123 (68.29%), Query Frame = 1
Query:  292 PPKKPRMSTGFSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDG-GVAWFLGTSVLLTVASLVPLFKGVSVESKSDGFMTSDAELWNGKVAMLGLVA*DFTEFVKGAPLVKL 657
            PP KP+ ST   +  AFSGPAPERINGRLAM+GFV AL VE  +G  + +QL  G G AWF  T  +L++ASLVPL +G S E ++   M ++AELWNG+ AM+GLVA   TE + G P + +
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGTPFINV 167          
BLAST of EY685100 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 3.009e-16
Identity = 60/131 (45.80%), Postives = 72/131 (54.96%), Query Frame = 1
Query:  268 TIPKAEPQPPKKPRMSTG--FSEVFAFSGPAPERINGRLAMIGFVAALGVEISKGQDVFAQLSDGGVAWFLGTSVLLTVASLVPLFKGVSVESKSD--GFMTSDAELWNGKVAMLGLVA*DFTEFVKGAPL 648
            T P + P PP  P        +EV  FSG APE INGRLAM+GFVAALG E+S G+ V  QL D      L T VL + ASL+P F       K D  G  T DAE+ NG+ AM+G  A    E ++G  L
Sbjct:   47 TPPPSSPSPPPPPPTPAAPTVTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQGIAL 171          
The following BLAST results are available for this feature:
BLAST of EY685100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA7.096e-5062.15Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL8.421e-3543.50Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU1.941e-3154.89High molecular mass early light-inducible protein ... [more]
ELI9_HORVU7.377e-3143.98Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU2.803e-3052.85Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA3.009e-1645.80Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-008-G05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685100 ID=EY685100; Name=EY685100; organism=Citrus sinensis; type=EST; length=980bp
CCACGCGTCCGGCCGACCTGAAGCACCCAATTCCCGAATTATACTTTGTT
CTGTTTTCTACTTCATAAATTAAAAATGGCCGCATCACTTGCTACTCAAT
CTATGCTGGCAAGTCCTGTAGCAGCTCGTGTGACTGGTATCAGGAGATCC
GGGGCAAACCAACTTTCCTCCGTCAAGTACTTGCCTAGTCTGCGTAGAAA
TGTCAACTTATCCGTGCGCTGCACGGCAGAGGATGAGCAGCAGCAGCAGC
AGAAAGATGATCAACCAACCATACCGAAAGCTGAGCCTCAGCCACCAAAG
AAGCCGCGGATGAGCACGGGGTTCTCTGAGGTGTTCGCGTTCAGCGGGCC
GGCACCGGAGAGGATAAACGGGAGGCTTGCGATGATTGGGTTCGTGGCTG
CATTGGGGGTGGAGATATCCAAGGGTCAGGATGTGTTTGCCCAGTTATCA
GACGGTGGGGTTGCCTGGTTCTTGGGGACCAGTGTTTTGCTCACGGTTGC
GTCCCTGGTTCCTTTGTTTAAAGGTGTCAGCGTGGAGTCTAAATCGGATG
GGTTCATGACTTCGGATGCTGAGTTGTGGAATGGGAAGGTTGCTATGCTG
GGCCTTGTTGCTTAGGATTTCACCGAGTTTGTTAAGGGGGCACCCCTGGT
TAAGCTTAATTTTGCTAAATCTGGAAATGTGTATTAATTTTACGCAATTA
AGGGAGCAAAACCAACGGAAACAATTCGCAATTTCCTCCTGGCTATTCTG
AGAATCCAACAAACCTTTATCACAAAAAAAAAAAAAAAAAAGGAGGCACC
TCTAAAGCACCACCAATCACCTAACGACGGGACCCGCAACCACTAACTTT
TTCTCACTCGGCAATCAAGAACGAAACATTGGCGCCGCACTGCTACATAA
TCACTATTGGTAACAACCAGCAACCGCCACAAAACATACAACAGCAGCAA
CATAACCCCCACACTATAAAATCAGCACAT
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