EY685062

Overview
NameEY685062
Unique NameEY685062
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length993
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685062 vs. ExPASy Swiss-Prot
Match: VPS4B_MOUSE (Vacuolar protein sorting-associated protein 4B OS=Mus musculus GN=Vps4b PE=1 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 3.633e-62
Identity = 124/229 (54.15%), Postives = 161/229 (70.31%), Query Frame = 1
Query:    1 KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTS-----------NGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLGRQRPTVSKSDL 654
            KW+GESEKLV +LFQ+ARE+ PSIIFIDEIDSLCG R E NESEA+RRIKTE LVQMQGVG ++  +LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++HLG T +SLTE+DF+ L RKT+G+SG+DIS+ V+D L +PVRK Q A  F K             N +  PC P   GA++++  ++      +++L P +S  D  + L   +PTV++ DL
Sbjct:  207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVP----GDKLLEPVVSMWDMLRSLSSTKPTVNEQDL 430          

HSP 2 Score: 21.9422 bits (45), Expect = 3.633e-62
Identity = 9/16 (56.25%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  650 ILKFKREFTKEFGEEG 697
            +LK K+ FT++FG+EG
Sbjct:  430 LLKLKK-FTEDFGQEG 444          
BLAST of EY685062 vs. ExPASy Swiss-Prot
Match: VPS4_YEAST (Vacuolar protein sorting-associated protein 4 OS=Saccharomyces cerevisiae GN=VPS4 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 8.275e-62
Identity = 129/228 (56.58%), Postives = 159/228 (69.74%), Query Frame = 1
Query:    1 KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTS-----NGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLGRQRPTVSKSDLEVQER 669
            KWMGESEKLV  LF MARE+ PSIIFIDE+D+L G RGEG ESEASRRIKTELLVQM GVG++ Q VLVL ATN P+ LD AIRRRF++RIYIPLPDL AR  MF++++GDTP  LT+ D+ +L   TEG+SGSDI+V VKD L +P+RK Q A  F   S          PC P   GA+++S  ++ A  L E    P ++  DF K +   RPTV++ DL  QE+
Sbjct:  205 KWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEG-ESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKE----PDLTIKDFLKAIKSTRPTVNEDDLLKQEQ 427          
BLAST of EY685062 vs. ExPASy Swiss-Prot
Match: VPS4B_HUMAN (Vacuolar protein sorting-associated protein 4B OS=Homo sapiens GN=VPS4B PE=1 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 1.050e-61
Identity = 124/229 (54.15%), Postives = 161/229 (70.31%), Query Frame = 1
Query:    1 KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTS-----------NGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLGRQRPTVSKSDL 654
            KW+GESEKLV +LFQ+ARE+ PSIIFIDEIDSLCG R E NESEA+RRIKTE LVQMQGVG ++  +LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MFK+HLG T +SLTE+DF  L RKT+G+SG+DIS+ V+D L +PVRK Q A  F K             + +  PC P   GA++++  ++      +++L P +S +D  + L   +PTV++ DL
Sbjct:  207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVP----GDKLLEPVVSMSDMLRSLSNTKPTVNEHDL 430          

HSP 2 Score: 21.9422 bits (45), Expect = 1.050e-61
Identity = 9/16 (56.25%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  650 ILKFKREFTKEFGEEG 697
            +LK K+ FT++FG+EG
Sbjct:  430 LLKLKK-FTEDFGQEG 444          
BLAST of EY685062 vs. ExPASy Swiss-Prot
Match: VPS4B_PONAB (Vacuolar protein sorting-associated protein 4B OS=Pongo abelii GN=VPS4B PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 3.035e-61
Identity = 123/229 (53.71%), Postives = 161/229 (70.31%), Query Frame = 1
Query:    1 KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTS-----------NGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLGRQRPTVSKSDL 654
            KW+GESEKLV +LFQ+ARE+ PSIIFIDEIDSLCG R E NESEA+RRIKTE LVQM+GVG ++  +LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MFK+HLG T +SLTE+DF  L RKT+G+SG+DIS+ V+D L +PVRK Q A  F K             + +  PC P   GA++++  ++      +++L P +S +D  + L   +PTV++ DL
Sbjct:  207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMRGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVP----GDKLLEPVVSMSDMLRSLSNTKPTVNEHDL 430          

HSP 2 Score: 21.9422 bits (45), Expect = 3.035e-61
Identity = 9/16 (56.25%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  650 ILKFKREFTKEFGEEG 697
            +LK K+ FT++FG+EG
Sbjct:  430 LLKLKK-FTEDFGQEG 444          
BLAST of EY685062 vs. ExPASy Swiss-Prot
Match: VPS4B_BOVIN (Vacuolar protein sorting-associated protein 4B OS=Bos taurus GN=VPS4B PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 3.035e-61
Identity = 123/229 (53.71%), Postives = 160/229 (69.87%), Query Frame = 1
Query:    1 KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTS-----------NGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLGRQRPTVSKSDL 654
            KW+GESEKLV +LFQ+ARE+ PSIIFIDEIDSLCG R E NESEA+RRIKTE LVQMQGVG ++  +LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MFK+HLG T +SLTE+DF  L +KTEG+SG+DIS+ V+D L +PVRK Q A  F K             + +  PC P   GA++++  ++      +++L P +  +D  + L   +PTV++ DL
Sbjct:  207 KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSE-NESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFKLHLGTTQNSLTEADFRDLGKKTEGYSGADISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNNIVDDLLTPCSPGDPGAIEMTWMDVP----GDKLLEPVVCMSDMLRSLSSTKPTVNEHDL 430          

HSP 2 Score: 21.9422 bits (45), Expect = 3.035e-61
Identity = 9/16 (56.25%), Postives = 14/16 (87.50%), Query Frame = 2
Query:  650 ILKFKREFTKEFGEEG 697
            +LK K+ FT++FG+EG
Sbjct:  430 LLKLKK-FTEDFGQEG 444          
BLAST of EY685062 vs. ExPASy Swiss-Prot
Match: VPS4A_RAT (Vacuolar protein sorting-associated protein 4A OS=Rattus norvegicus GN=Vps4a PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 3.144e-61
Identity = 121/229 (52.84%), Postives = 159/229 (69.43%), Query Frame = 1
Query:    1 KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTS-----------NGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLGRQRPTVSKSDL 654
            KW+GESEKLV +LF++AR+  PSIIFIDE+DSLCG R E NESEA+RRIKTE LVQMQGVG+N+   LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++HLG TPH+LT+++   LARKTEG+SG+DIS+ V+D L +PVRK Q A  F K             + +  PC P   GA++++  ++      +++L P +  +D  + L   RPTV+  DL
Sbjct:  200 KWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSVMIDDLLTPCSPGDPGAIEMTWMDVP----GDKLLEPVVCMSDMLRSLATTRPTVNADDL 423          
BLAST of EY685062 vs. ExPASy Swiss-Prot
Match: VPS4A_MOUSE (Vacuolar protein sorting-associated protein 4A OS=Mus musculus GN=Vps4a PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 3.144e-61
Identity = 121/229 (52.84%), Postives = 159/229 (69.43%), Query Frame = 1
Query:    1 KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTS-----------NGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLGRQRPTVSKSDL 654
            KW+GESEKLV +LF++AR+  PSIIFIDE+DSLCG R E NESEA+RRIKTE LVQMQGVG+N+   LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++HLG TPH+LT+++   LARKTEG+SG+DIS+ V+D L +PVRK Q A  F K             + +  PC P   GA++++  ++      +++L P +  +D  + L   RPTV+  DL
Sbjct:  200 KWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSVMIDDLLTPCSPGDPGAIEMTWMDVP----GDKLLEPVVCMSDMLRSLATTRPTVNADDL 423          
BLAST of EY685062 vs. ExPASy Swiss-Prot
Match: VPS4A_HUMAN (Vacuolar protein sorting-associated protein 4A OS=Homo sapiens GN=VPS4A PE=1 SV=1)

HSP 1 Score: 234.958 bits (598), Expect = 5.363e-61
Identity = 121/229 (52.84%), Postives = 159/229 (69.43%), Query Frame = 1
Query:    1 KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKTS-----------NGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLGRQRPTVSKSDL 654
            KW+GESEKLV +LF++AR+  PSIIFIDE+DSLCG R E NESEA+RRIKTE LVQMQGVG+N+   LVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++HLG TPH+LT+++   LARKTEG+SG+DIS+ V+D L +PVRK Q A  F K             + +  PC P   GA++++  ++      +++L P +  +D  + L   RPTV+  DL
Sbjct:  200 KWLGESEKLVKNLFELARQHKPSIIFIDEVDSLCGSRNE-NESEAARRIKTEFLVQMQGVGNNNDGTLVLGATNIPWVLDSAIRRRFEKRIYIPLPEEAARAQMFRLHLGSTPHNLTDANIHELARKTEGYSGADISIIVRDSLMQPVRKVQSATHFKKVCGPSRTNPSMMIDDLLTPCSPGDPGAMEMTWMDVP----GDKLLEPVVCMSDMLRSLATTRPTVNADDL 423          
BLAST of EY685062 vs. ExPASy Swiss-Prot
Match: VPS4_SCHPO (Suppressor protein of bem1/bed5 double mutants OS=Schizosaccharomyces pombe GN=vps4 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 8.015e-57
Identity = 118/231 (51.08%), Postives = 153/231 (66.23%), Query Frame = 1
Query:    1 KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFF-----FKTSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLGRQRPTVSKSDLEVQERIHK 678
            KWMGESE+LV  LF+MARE  PSIIFIDEIDSLCG R EG ESE+SRRIKTE LVQM GVG ++  VLVL ATN P+ LD AIRRRF+KRIYIPLP+  AR  MF++++G  P  LT  DF+ LA+ T+G+SGSDIS+ V+D + EPVR+   A  F      K++  +  PC P    A + S  E+      E I+ P ++  DF   + + +PT++  D+E   +  K
Sbjct:  201 KWMGESERLVRQLFEMAREQKPSIIFIDEIDSLCGSRSEG-ESESSRRIKTEFLVQMNGVGKDESGVLVLGATNIPWTLDSAIRRRFEKRIYIPLPNAHARARMFELNVGKIPSELTSQDFKELAKMTDGYSGSDISIVVRDAIMEPVRRIHTATHFKEVYDNKSNRTLVTPCSPGDPDAFESSWLEVN----PEDIMEPKLTVRDFYSAVRKVKPTLNAGDIEKHTQFTK 426          
BLAST of EY685062 vs. ExPASy Swiss-Prot
Match: VPS4_DICDI (Vacuolar protein sorting-associated protein 4 OS=Dictyostelium discoideum GN=vps4 PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.239e-49
Identity = 108/229 (47.16%), Postives = 148/229 (64.63%), Query Frame = 1
Query:    1 KWMGESEKLVSSLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHSLTESDFESLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFK----------TSNGMWMPCGPKQSGAVQISMQELAAKGLAEQILPPPISKTDFDKVLGRQRPTVSKSDLE 657
            KW+G+SEKLV  LF+MARE   S+IFIDE+DSLC  R +  ESE++RRIKTE L+QM GVG++   +LVLAATN P+ LD AIRRRF+KRIYI LP+ +AR  MF++H+G TP++L ++D++ LA  TEG+SGSDI   VKD + +PVR  Q A  F +                 PC P    A +++  ++    L E    P I+  D  K L   +P+V+K+DL+
Sbjct:  207 KWLGDSEKLVKQLFEMAREKNNSVIFIDEVDSLCSSRND-QESESARRIKTEFLIQMNGVGNDSDGILVLAATNIPWGLDLAIRRRFEKRIYIGLPEPQARAKMFQIHIGSTPNTLVQADYKKLADLTEGYSGSDIGSLVKDAIMQPVRAVQCATHFKQIRAPSREDPSVMTDYVTPCSPGDPLAQEMTWMDIDPTKLKE----PEITIADCLKSLRVIKPSVNKADLD 430          
The following BLAST results are available for this feature:
BLAST of EY685062 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 362
Match NameE-valueIdentityDescription
VPS4B_MOUSE3.633e-6254.15Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4_YEAST8.275e-6256.58Vacuolar protein sorting-associated protein 4 OS=S... [more]
VPS4B_HUMAN1.050e-6154.15Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_PONAB3.035e-6153.71Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4B_BOVIN3.035e-6153.71Vacuolar protein sorting-associated protein 4B OS=... [more]
VPS4A_RAT3.144e-6152.84Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_MOUSE3.144e-6152.84Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4A_HUMAN5.363e-6152.84Vacuolar protein sorting-associated protein 4A OS=... [more]
VPS4_SCHPO8.015e-5751.08Suppressor protein of bem1/bed5 double mutants OS=... [more]
VPS4_DICDI1.239e-4947.16Vacuolar protein sorting-associated protein 4 OS=D... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-008-C08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685062 ID=EY685062; Name=EY685062; organism=Citrus sinensis; type=EST; length=993bp
AAGTGGATGGGTGAAAGTGAAAAGCTTGTCTCAAGCCTTTTCCAGATGGC
TCGTGAAAGTGCTCCTTCCATTATTTTTATTGATGAAATAGATTCCTTAT
GTGGTCAGCGTGGAGAAGGCAATGAGAGCGAAGCTTCTCGGCGCATCAAA
ACTGAACTTCTTGTACAGATGCAGGGTGTTGGACACAACGATCAGAAAGT
TCTTGTTCTTGCTGCAACAAATACTCCCTATGCTCTAGATCAGGCCATCC
GGCGACGTTTTGACAAGCGTATATACATCCCTCTTCCAGATTTGAAGGCA
AGACAGCACATGTTCAAGGTGCATTTAGGAGATACACCCCACAGTTTGAC
TGAAAGTGATTTTGAAAGTTTAGCTCGCAAGACCGAGGGGTTTTCTGGTT
CTGATATTTCCGTTTGTGTAAAGGATGTCTTGTTCGAACCTGTACGGAAA
ACTCAGGATGCCATGTTTTTCTTTAAGACCTCTAATGGTATGTGGATGCC
ATGTGGACCGAAGCAATCAGGTGCTGTTCAGATTTCGATGCAGGAGCTTG
CAGCAAAAGGGCTTGCAGAACAGATCCTTCCACCCCCTATTTCGAAAACA
GATTTTGATAAAGTTCTTGGCAGACAGAGGCCAACAGTGAGCAAAAGTGA
TCTTGAAGTTCAAGAGAGAATTCACAAAGGAGTTTGGAGAGGAAGGGTAA
TGGGGCCTATTATGCACATAAATGCTGAATCATGCTAATGAGTGGCAAGC
ATATGAATCTTGATGTATTTTATCACTTCTGGGATCAATCCATTTTCCTC
CTCCAAAAAGGGGAGGGGGACTTGGATTTCCCTTTATTCGGGATTCCAAT
GGGAAAAATGGGGGGTTTGAAACTTGTAAATTTTTTTTGGTTTGAAATTT
GGGAAAAAAACACGATCCCCCACAATTAAGGGCCTCTACTTTGCTGTGTC
GGTTTTCACAAAAAAAAAACAAAAAAGGGGCTGCCCCACTTCA
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