EY685061

Overview
NameEY685061
Unique NameEY685061
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length967
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY685061 vs. ExPASy Swiss-Prot
Match: RS8_MAIZE (40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2)

HSP 1 Score: 238.81 bits (608), Expect = 3.541e-62
Identity = 124/158 (78.48%), Postives = 128/158 (81.01%), Query Frame = 3
Query:    3 NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGKSAGA 476
            NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR                           SNHV+RKLEKR++ RTLDPHIEEQFGSGRLLACI+SRPGQCGRADGYILEGKELEFYMKKLQRKKGKSA A
Sbjct:   65 NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKTPAAKKDNAEGQEVEAAAEETKK-SNHVTRKLEKRKEGRTLDPHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKSAVA 221          
BLAST of EY685061 vs. ExPASy Swiss-Prot
Match: RS8_ORYSJ (40S ribosomal protein S8 OS=Oryza sativa subsp. japonica GN=RPS8 PE=2 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 2.997e-61
Identity = 123/158 (77.85%), Postives = 125/158 (79.11%), Query Frame = 3
Query:    3 NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGKSAGA 476
            NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYL HYGVDIGR                           SNHV RKLEKRQ+ RTLD HIEEQFGSGRLLACI+SRPGQCGRADGYILEGKELEFYMKKLQRKKGK A A
Sbjct:   65 NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEGQDAEATTEEAKK--SNHVVRKLEKRQQGRTLDAHIEEQFGSGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKKGKGASA 220          
BLAST of EY685061 vs. ExPASy Swiss-Prot
Match: RS8_PRUAR (40S ribosomal protein S8 OS=Prunus armeniaca GN=RPS8 PE=2 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 4.785e-59
Identity = 118/159 (74.21%), Postives = 126/159 (79.25%), Query Frame = 3
Query:    3 NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGKSAGAA 479
            N+SWGSEAVTRKTR+LDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV+IGR                           SNHV+ KLEKRQ+ RTLD HIEEQFG G+LLACI+SRPGQCG+ADG ILEGKELEFYMKKLQRKKGK AGAA
Sbjct:   65 NFSWGSEAVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVEIGRKKKTAAAKKDTPEEGEATTEEAKK---SNHVAIKLEKRQQGRTLDAHIEEQFGGGKLLACISSRPGQCGKADGDILEGKELEFYMKKLQRKKGKGAGAA 220          
BLAST of EY685061 vs. ExPASy Swiss-Prot
Match: RS82_ARATH (40S ribosomal protein S8-2 OS=Arabidopsis thaliana GN=RPS8B PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 8.163e-59
Identity = 119/159 (74.84%), Postives = 124/159 (77.99%), Query Frame = 3
Query:    3 NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGKSAGAA 479
            N+SWGSEAVTRKTRILDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGVDIGR                           SNHV RKLE RQ+ R LD H+EEQF SGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQ+KKGK+AGAA
Sbjct:   65 NFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEVKK-------------SNHVQRKLEMRQEGRALDSHLEEQFSSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGKNAGAA 210          
BLAST of EY685061 vs. ExPASy Swiss-Prot
Match: RS81_ARATH (40S ribosomal protein S8-1 OS=Arabidopsis thaliana GN=RPS8A PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 4.192e-55
Identity = 108/157 (68.79%), Postives = 120/157 (76.43%), Query Frame = 3
Query:    3 NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXX-SNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGKSA 470
            NYSWGSEA TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV++GR                            SNH+ RK+  RQ+ R+LD HIE+QF SGRLLACI+SRPGQCGRADGYILEGKELEFYMKK+Q+KKGK A
Sbjct:   65 NYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKKGKGA 221          
BLAST of EY685061 vs. ExPASy Swiss-Prot
Match: RS8_ICTPU (40S ribosomal protein S8 OS=Ictalurus punctatus GN=rps8 PE=2 SV=3)

HSP 1 Score: 175.637 bits (444), Expect = 3.681e-43
Identity = 84/154 (54.55%), Postives = 108/154 (70.13%), Query Frame = 3
Query:    3 NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK 464
            N+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ ++ VD+APF+QWY  HY + +GR                           S  V +K +KR+K+  + P ++EQF  G+LLACI+SRPGQCGRADGY+LEGKELEFY++K++ KKGK
Sbjct:   64 NFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCVILVDSAPFRQWYESHYALPLGR---------KKGAKLTPEEEDILNKKRSKKVQKKFDKRRKNSKISPLLDEQFQQGKLLACISSRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208          
BLAST of EY685061 vs. ExPASy Swiss-Prot
Match: RS8_XENLA (40S ribosomal protein S8 OS=Xenopus laevis GN=rps8 PE=2 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 9.067e-42
Identity = 84/154 (54.55%), Postives = 105/154 (68.18%), Query Frame = 3
Query:    3 NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK 464
            N+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ I+ VD+ PF+QW+  HY + +GR                           S    +K E+R+K   + P +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++ KKGK
Sbjct:   64 NFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCILLVDSTPFRQWFEAHYALPLGRKKGAKLTPEEEEILNKKR---------SKKTQKKYEERKKTAKISPLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKAKKGK 208          
BLAST of EY685061 vs. ExPASy Swiss-Prot
Match: RS8_RAT (40S ribosomal protein S8 OS=Rattus norvegicus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 3.445e-41
Identity = 81/154 (52.60%), Postives = 106/154 (68.83%), Query Frame = 3
Query:    3 NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK 464
            N+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                           S  + +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++ +KGK
Sbjct:   64 NFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGR---------KKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208          
BLAST of EY685061 vs. ExPASy Swiss-Prot
Match: RS8_MOUSE (40S ribosomal protein S8 OS=Mus musculus GN=Rps8 PE=1 SV=2)

HSP 1 Score: 169.088 bits (427), Expect = 3.445e-41
Identity = 81/154 (52.60%), Postives = 106/154 (68.83%), Query Frame = 3
Query:    3 NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK 464
            N+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                           S  + +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++ +KGK
Sbjct:   64 NFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGR---------KKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208          
BLAST of EY685061 vs. ExPASy Swiss-Prot
Match: RS8_MACFA (40S ribosomal protein S8 OS=Macaca fascicularis GN=RPS8 PE=2 SV=3)

HSP 1 Score: 169.088 bits (427), Expect = 3.445e-41
Identity = 81/154 (52.60%), Postives = 106/154 (68.83%), Query Frame = 3
Query:    3 NYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXSNHVSRKLEKRQKDRTLDPHIEEQFGSGRLLACIASRPGQCGRADGYILEGKELEFYMKKLQRKKGK 464
            N+SWGSE  TRKTRI+DVVYNASNNELVRT+TLVK+ IV +D+ P++QWY  HY + +GR                           S  + +K ++R+K+  +   +EEQF  G+LLACIASRPGQCGRADGY+LEGKELEFY++K++ +KGK
Sbjct:   64 NFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGR---------KKGAKLTPEEEEILNKKRSKKIQKKYDERKKNAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARKGK 208          
The following BLAST results are available for this feature:
BLAST of EY685061 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RS8_MAIZE3.541e-6278.4840S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 ... [more]
RS8_ORYSJ2.997e-6177.8540S ribosomal protein S8 OS=Oryza sativa subsp. ja... [more]
RS8_PRUAR4.785e-5974.2140S ribosomal protein S8 OS=Prunus armeniaca GN=RP... [more]
RS82_ARATH8.163e-5974.8440S ribosomal protein S8-2 OS=Arabidopsis thaliana... [more]
RS81_ARATH4.192e-5568.7940S ribosomal protein S8-1 OS=Arabidopsis thaliana... [more]
RS8_ICTPU3.681e-4354.5540S ribosomal protein S8 OS=Ictalurus punctatus GN... [more]
RS8_XENLA9.067e-4254.5540S ribosomal protein S8 OS=Xenopus laevis GN=rps8... [more]
RS8_RAT3.445e-4152.6040S ribosomal protein S8 OS=Rattus norvegicus GN=R... [more]
RS8_MOUSE3.445e-4152.6040S ribosomal protein S8 OS=Mus musculus GN=Rps8 P... [more]
RS8_MACFA3.445e-4152.6040S ribosomal protein S8 OS=Macaca fascicularis GN... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-008-C07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685061 ID=EY685061; Name=EY685061; organism=Citrus sinensis; type=EST; length=967bp
GAAACTACTCCTGGGGAAGTGAAGCAGTGACTCGTAAGACCAGAATTCTG
GATGTGGTATACAATGCCTCCAATAATGAGCTGGTCCGTACTCAAACTTT
GGTGAAGAGTGCCATTGTTCAGGTTGATGCAGCACCATTCAAGCAGTGGT
ATCTCCAGCATTATGGTGTTGACATTGGTCGCAAGAAGAAGGCTGCAGCT
GCTGCCACAACCAAGAAAGAAGGAGAGGAAGGAGAGGCTCCCGCCACTGA
GGAGGCAAAGAAGAGCAACCATGTCTCGAGAAAGCTTGAGAAGCGTCAAA
AAGATCGCACACTTGACCCACATATTGAGGAGCAGTTTGGTAGTGGTCGT
TTGTTAGCTTGTATCGCATCACGGCCTGGCCAGTGTGGACGTGCTGATGG
ATACATCTTGGAGGGTAAAGAACTGGAATTCTACATGAAGAAGTTACAGA
GGAAGAAGGGCAAGAGTGCTGGTGCTGCTTAAATTTTTGTTTATTGAAAC
TCCGTACTGGAATTTCTAGTTTTGTCTTGTGTTCTTGTTTTTAGTCTTAA
GTTAAGACTTCTAGAGTCGAGATGATATCAACAGTCGAACTTGTATTTCT
CACTTGTGTTATTGTTATATTTTGGTTTTGGAGCTTAGCAAAGACAAAGA
CCCACACAGGGCCAACAGAGCAGTAGACAAAAAGGACATCCAAAACAATG
ACAAAAAAGGGGGGGCGGACCCTAAGGAGAACCAGCTACTAACTCGCGCG
GGCGCGAGCCATAAATAACTTCTGAAGCGGCACCCCACCCGCAGATTAAG
AGCTCACGTAATTTAGACACTAGCGGGCGTGAGACATACCCGACCCGACC
GCGAACAGACAACGTTCGGGATCACCTAGCACCCTTGCCGCCAGCGGGCC
GCCACAGACACGAGGCCCCCCCCCTAATATCCCCGCACTAGCCACCACCC
CGCCAGACCCGCACCTC
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