EY685047

Overview
NameEY685047
Unique NameEY685047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length934
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY685047_ssr328 microsatellite EY685047_ssr328:328..337. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY685047 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.023e-26
Identity = 56/61 (91.80%), Postives = 56/61 (91.80%), Query Frame = 2
Query:   74 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVLLVPIHFPPHYRFK 256
            SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP DSPYAGGV LV IHFPP Y FK
Sbjct:    3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFK 63          
BLAST of EY685047 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.280e-26
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 2
Query:   74 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVLLVPIHFPPHYRFK 256
            SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP DSPY+GGV LV IHFPP Y FK
Sbjct:    3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFK 63          
BLAST of EY685047 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 2.280e-26
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 2
Query:   74 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVLLVPIHFPPHYRFK 256
            SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP DSPY+GGV LV IHFPP Y FK
Sbjct:    3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFK 63          
BLAST of EY685047 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 2.280e-26
Identity = 54/61 (88.52%), Postives = 57/61 (93.44%), Query Frame = 2
Query:   74 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVLLVPIHFPPHYRFK 256
            SKRILKELKDLQKDPP++CSAGPVAEDMFHWQATIMGPP+SPYAGGV LV IHFPP Y FK
Sbjct:    3 SKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFK 63          
BLAST of EY685047 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.977e-26
Identity = 55/61 (90.16%), Postives = 56/61 (91.80%), Query Frame = 2
Query:   74 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVLLVPIHFPPHYRFK 256
            SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP +SPYAGGV LV IHFPP Y FK
Sbjct:    3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFK 63          
BLAST of EY685047 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.633e-26
Identity = 54/61 (88.52%), Postives = 56/61 (91.80%), Query Frame = 2
Query:   74 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVLLVPIHFPPHYRFK 256
            SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP +SPY+GGV LV IHFPP Y FK
Sbjct:    3 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFK 63          
BLAST of EY685047 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.171e-22
Identity = 47/61 (77.05%), Postives = 53/61 (86.89%), Query Frame = 2
Query:   74 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVLLVPIHFPPHYRFK 256
            ++RILKELK+LQ+DPP SCSAGP  EDMFHWQATIMGP +SPY+GGV LV IHFPP Y FK
Sbjct:    3 TRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFK 63          
BLAST of EY685047 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.810e-22
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 2
Query:   74 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVLLVPIHFPPHYRFK 256
            SKRI KEL+DLQ+DPP SCSAGP  +DMF WQATIMGP DSP+AGGV LV IHFPP Y FK
Sbjct:    3 SKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFK 63          
BLAST of EY685047 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.766e-21
Identity = 44/61 (72.13%), Postives = 51/61 (83.61%), Query Frame = 2
Query:   74 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVLLVPIHFPPHYRFK 256
            SKRI KEL DL++DPPTSCSAGPV +D++HWQA+IMGP DSPYAGGV  + IHFP  Y FK
Sbjct:    4 SKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFK 64          
BLAST of EY685047 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.431e-20
Identity = 45/60 (75.00%), Postives = 49/60 (81.67%), Query Frame = 2
Query:   77 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVLLVPIHFPPHYRFK 256
            KRI KEL DL +DPP+SCSAGPV ED+FHWQATIMGP DSPYAGGV  + IHFP  Y FK
Sbjct:    4 KRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFK 63          
The following BLAST results are available for this feature:
BLAST of EY685047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
UBC4_SOLLC1.023e-2691.80Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC9_ARATH2.280e-2690.16SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC28_ARATH2.280e-2690.16Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC11_ARATH2.280e-2688.52Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC10_ARATH2.977e-2690.16Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC8_ARATH6.633e-2688.52Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC29_ARATH1.171e-2277.05Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC30_ARATH5.810e-2277.05Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC4_YEAST3.766e-2172.13Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC1_MAGGR1.431e-2075.00Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-008-A12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY685047 ID=EY685047; Name=EY685047; organism=Citrus sinensis; type=EST; length=934bp
TTTTTTTTTTTTTAACTTCCCCTTATGGAATTTTTTTACAAACAACAATT
TCAGAGAATTACCCTTATGGCGCTCCAAGCGGATCTTGAAGGAGCTGAAG
GATCTCCAGAAAGATCCTCCTACCTCTTGCAGCGCCGGCCCCGTTGCGGA
AGACATGTTTCATTGGCAAGCAACAATCATGGGCCCTCCTGATAGTCCAT
ATGCAGGCGGAGTGTTACTAGTTCCAATTCATTTTCCTCCACACTATCGA
TTTAAACGCAGCTAAGGTTGCATTCACCACGAGGCCTCTCCTATCTTAAC
ATAGGAAAAGAGGGGAGGAGAAAGGAGGAGAGAGAGAAGAGAAAGGAGGG
CCAACACCCCCCCCCACACCAACCCACCGCCCCCACCCCAACCCCCCCCC
CCCCCCCCCCCACCCCCCCCCCCCCCGGCGCGGAGGCGGGCCCGCGGGGC
AGGGGCGAACGAGCGGACGCCGACCCCCCCAACGCCGATCACCACCCCAC
CGCAGAACGGAGGACAGCCCGCGACCAGCGCAGCGCAGCCGCCTCCGCCG
ACCCCAACCCCAACTCAAGGAGAAACAACACAAGAAACCCAGAGAACAGA
CGACAACGAAAACGCGACAAGCCAATCGATGCACCCGCGCCAGGAAGAGC
GAAACCGGACCGCGCGACCAGCACGAAGCCGGCGAGCAGCCGACCAACCA
GCAGAACCAACCAACACCACACGAGCACGCTGAAAACCGTGCCAACGGCC
CACGGGGGCGGACACCCCCCGCACACGCAGCAAGGACAGGGGCGAGACGG
ATTGGAGTGAACCGGGACGGGGACCCACGCAAAACGGGCAGCAGGACAGC
ACCGACCCGAAAACCAGGCCAACCACGACAGAGAAATAACAGCAGCACCA
ACCAAAAGCCGACACCAAACGACGCAGAAGACAA
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