EY710319

Overview
NameEY710319
Unique NameEY710319
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1036
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710319 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 6.882e-63
Identity = 108/120 (90.00%), Postives = 112/120 (93.33%), Query Frame = 1
Query:   67 MGSTE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLKVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVILYN 417
            MGS+E  GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDL+VMDNCLKVT GVDHVFNLAADMGGMGFIQSNHSVI+YN
Sbjct:    1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYN 120          

HSP 2 Score: 40.0466 bits (92), Expect = 6.882e-63
Identity = 32/80 (40.00%), Postives = 43/80 (53.75%), Query Frame = 2
Query:  422 TLISFHMLEASRISGVKRFF*CLHCLRLS*I*AAGTSLSLEESKAGPLT------L*RLSHGELAVEKYECLSKIFGIGC 643
            T+ISF+MLEA+RI+GVKRFF               T++SL+ES A P        L +L+  EL     +  +K FGI C
Sbjct:  122 TMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELC----KHYTKDFGIEC 197          
BLAST of EY710319 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.382e-62
Identity = 107/120 (89.17%), Postives = 111/120 (92.50%), Query Frame = 1
Query:   67 MGSTE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLKVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVILYN 417
            MGS+E  GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDL+VMDNCLKVT  VDHVFNLAADMGGMGFIQSNHSVI+YN
Sbjct:    1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNSVDHVFNLAADMGGMGFIQSNHSVIMYN 120          

HSP 2 Score: 40.0466 bits (92), Expect = 3.382e-62
Identity = 32/80 (40.00%), Postives = 43/80 (53.75%), Query Frame = 2
Query:  422 TLISFHMLEASRISGVKRFF*CLHCLRLS*I*AAGTSLSLEESKAGPLT------L*RLSHGELAVEKYECLSKIFGIGC 643
            T+ISF+MLEA+RI+GVKRFF               T++SL+ES A P        L +L+  EL     +  +K FGI C
Sbjct:  122 TMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELC----KHYTKDFGIEC 197          
BLAST of EY710319 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 1.662e-61
Identity = 103/118 (87.29%), Postives = 112/118 (94.92%), Query Frame = 1
Query:   67 MGSTEGT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLKVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVILYN 417
            MG+T GT YGAYTY+ELERE YWPSE L+IS+TGAGGFIASHIARRLK EGHY+IASDWKKNEHMTEDMFC EFHLVDL+VM+NCLKVT+GVDHVFNLAADMGGMGFIQSNHSVI+YN
Sbjct:    1 MGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYN 118          

HSP 2 Score: 37.7354 bits (86), Expect = 1.662e-61
Identity = 31/81 (38.27%), Postives = 45/81 (55.56%), Query Frame = 2
Query:  422 TLISFHMLEASRISGVKRFF*CLH-CLRLS*I*AAGTSLSLEESKAGPLT------L*RLSHGELAVEKYECLSKIFGIGC 643
            T+ISF+M+EA+RI+G+KRFF     C+         T++SL+ES A P        L +L+  EL     +  +K FGI C
Sbjct:  120 TMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELC----KHYNKDFGIEC 196          
BLAST of EY710319 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.389e-60
Identity = 100/107 (93.46%), Postives = 104/107 (97.20%), Query Frame = 1
Query:   97 YTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLKVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVILYN 417
            YTY ELE+EPYWP EKLRIS+TGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDL+VMDNCLKVT GVDHVFNLAADMGGMGFIQSNHSVI+YN
Sbjct:    7 YTYVELEKEPYWPFEKLRISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTTGVDHVFNLAADMGGMGFIQSNHSVIMYN 113          

HSP 2 Score: 39.2762 bits (90), Expect = 1.389e-60
Identity = 32/80 (40.00%), Postives = 42/80 (52.50%), Query Frame = 2
Query:  422 TLISFHMLEASRISGVKRFF*CLHCLRLS*I*AAGTSLSLEESKAGPLT------L*RLSHGELAVEKYECLSKIFGIGC 643
            T+ISF+MLEA+RI+GVKRFF               T +SL+ES A P        L +L+  EL     +  +K FGI C
Sbjct:  115 TMISFNMLEAARINGVKRFFYASSACIYPEFKQLDTVVSLKESDAWPAEPQDAYGLEKLATEELC----KHYTKDFGIEC 190          
The following BLAST results are available for this feature:
BLAST of EY710319 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GME1_ORYSJ6.882e-6390.00GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSI3.382e-6289.17GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME_ARATH1.662e-6187.29GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
GME2_ORYSJ1.389e-6093.46GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-097-D12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710319 ID=EY710319; Name=EY710319; organism=Citrus sinensis; type=EST; length=1036bp
AGCCATTCTCCTCCTCCTTTATCTTCTCCTCTTCATTAAACTCTCAAAGT
TCAGGTGTTTTTCAGAATGGGAAGTACTGAAGGAACCTATGGTGCATACA
CCTATGAGGAGCTTGAGAGGGAACCTTACTGGCCTTCCGAGAAGCTCCGA
ATTTCTGTCACTGGGGCAGGTGGTTTTATTGCCTCCCACATTGCTCGGCG
TCTGAAGAGTGAAGGCCATTACATTATTGCTTCTGACTGGAAGAAGAATG
AGCACATGACTGAGGATATGTTCTGTCATGAATTCCACCTTGTTGACCTT
AAGGTCATGGACAATTGCTTGAAAGTTACTAAGGGGGTTGACCATGTGTT
TAACCTTGCTGCTGATATGGGTGGTATGGGCTTTATTCAGTCCAACCACT
CTGTCATCTTGTATAACATATACCTTGATCAGCTTTCACATGCTTGAGGC
TTCAAGGATCAGTGGAGTAAAGAGGTTTTTCTAATGCCTACATTGCCTGC
GTCTATCATGAATTTAAGCAGCTGGAACTAGCCTAAGCTTGGAGGAGTCA
AAAGCTGGCCCGCTAACCCTCTAGAGATTATCGCATGGAGAACTTGCAGT
GGAGAAGTACGAATGCCTAAGCAAGATCTTTGGAATAGGTTGCGGTTGGT
AAATCCGAGAATATTACGGCATTTGTAAATGGAAGAGGGAAGAAGAAATC
CTGCAGATTTTACAAAGGATTAAATAACAACAAGTTAGAAATGAGTAAGA
AAATCATAAAAAAATACCAATACGACAGATTAACAACCTGATACAATATA
AAAATACTGAATGAGAAGAAAATACCGAAAGAGTAGAAACATACAGGAAA
TAAGAAATATAAAAATAAAGAACAATAAATACAAGAAAGGTAATCAAAAC
AGATAGAAAGGTAAAAGACGGGAATACATATGAAGGGCAGCTGAACTACA
ACATGACATAACAACACATGAACATATTAACACTTCCTATCCAATAGACA
CCACCATGAGGACAAGGAGAAGGAAAGAAATAGGAC
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