EY684932

Overview
NameEY684932
Unique NameEY684932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684932_ssr841 microsatellite EY684932_ssr841:841..852. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684932 vs. ExPASy Swiss-Prot
Match: CP21C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial OS=Arabidopsis thaliana GN=CYP21-3 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 1.093e-33
Identity = 73/133 (54.89%), Postives = 94/133 (70.68%), Query Frame = 3
Query:    3 TRPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKSKDSKG-FELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 398
            T P  VD+F+  CQ GYFKG  F  V+K++VIQAG S +  A  +W      R  + TS KHE FM+GT K+K+ +G FE +I +A I DLN+KL VFGRV KG+DVVQEIEEV+TD+ YQPKS + I++VTL
Sbjct:   97 TAPNVVDQFMKFCQDGYFKGFLFSRVVKHFVIQAGDSAEFDAVKDWALD---RKNIDTSLKHEEFMVGTPKAKNEQGGFEFFIVSAQIKDLNEKLTVFGRVSKGQDVVQEIEEVETDDQYQPKSPIEIMSVTL 226          
BLAST of EY684932 vs. ExPASy Swiss-Prot
Match: PPWD1_PONAB (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Pongo abelii GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.317e-14
Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 3
Query:    9 PETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD-EHYQPKSDVGIINVTLK 401
            P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  ++ +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V  + +  +P  DV IIN+T+K
Sbjct:  513 PKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 646          
BLAST of EY684932 vs. ExPASy Swiss-Prot
Match: PPWD1_HUMAN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.317e-14
Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 3
Query:    9 PETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD-EHYQPKSDVGIINVTLK 401
            P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  ++ +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V  + +  +P  DV IIN+T+K
Sbjct:  513 PKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 646          
BLAST of EY684932 vs. ExPASy Swiss-Prot
Match: PPWD1_BOVIN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Bos taurus GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.317e-14
Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 3
Query:    9 PETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD-EHYQPKSDVGIINVTLK 401
            P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  ++ +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V  + +  +P  DV IIN+T+K
Sbjct:  511 PKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITVK 644          
BLAST of EY684932 vs. ExPASy Swiss-Prot
Match: PPWD1_MOUSE (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Mus musculus GN=Ppwd1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.256e-13
Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 3
Query:    9 PETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHE-AFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTD-EHYQPKSDVGIINVTLK 401
            P+TV+ F    + GY+ G +FH +IK ++IQ G         E    G+   +  ++ +H+  + +    +  ++ G + +IT  P P L++K  VFGRV KG +VVQ I  V  + +  +P  DV IIN+T+K
Sbjct:  513 PKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVSKGMEVVQRIFNVKVNPQTDKPYEDVSIINITVK 646          
BLAST of EY684932 vs. ExPASy Swiss-Prot
Match: PPIL2_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhizopus oryzae GN=cyp14 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.798e-13
Identity = 40/133 (30.08%), Postives = 73/133 (54.89%), Query Frame = 3
Query:    6 RPETVDKFIDLCQKGYFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV--KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIINVTL 398
            +P+T   FI+L + GY+  + FH  IK ++IQ G         E   +     +++T+ KH+A  + ++  + KD+ G + +IT A  P L+    VFG+VV G DV+ ++E +  DE  +P+ ++ I  + +
Sbjct:  306 KPKTCHNFIELAKTGYYNDVIFHRNIKKFMIQGGDPTGTGKGGESIWKRYFPDEIKTTLKHDARGVLSMANRGKDTNGSQFFITYAAAPHLDGLHTVFGKVVGGLDVLSKLESIPVDEKDRPEREIKIKQIQM 438          
BLAST of EY684932 vs. ExPASy Swiss-Prot
Match: CYP1_BRUMA (Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.063e-12
Identity = 46/140 (32.86%), Postives = 73/140 (52.14%), Query Frame = 3
Query:    9 PETVDKFIDLC-----------QKGYFKGMSFHHVIKNYVIQAGH-SKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV-KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 389
            P T + F+ LC           +  ++KG +FH VIKN++IQ G  +K      E    G    +       E F++    K  ++ G + +ITT P P LN+  +VFG+VV G++VV +IE + T+   +P +DV I+N
Sbjct:   33 PRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILN 172          
BLAST of EY684932 vs. ExPASy Swiss-Prot
Match: PPID_YARLI (Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia lipolytica GN=CPR6 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.535e-11
Identity = 42/139 (30.22%), Postives = 74/139 (53.24%), Query Frame = 3
Query:    9 PETVDKFIDLC--QKG--------YFKGMSFHHVIKNYVIQAGH-SKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 389
            P+T + F  LC  +KG        +FKG SFH VIK++++Q G  +       E     K   +    P  + F++    +  ++ G + +ITT   P L++K +VFG+++ G+ +V++IE  +T E  +PK  V I++
Sbjct:   30 PKTAENFRALCTGEKGNTQAGIPLHFKGSSFHRVIKDFMVQGGDFTAGNGTGGESIYGEKFPDEAFPYPHDQPFLLSMANAGPNTNGSQFFITTTETPHLDNKHVVFGKLLSGKGIVRQIERTETGEQDRPKQPVTIVD 168          
BLAST of EY684932 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.535e-11
Identity = 43/132 (32.58%), Postives = 69/132 (52.27%), Query Frame = 3
Query:    9 PETVDKFIDLC--QKG--------YFKGMSFHHVIKNYVIQAGHSKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTVKS-KDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKS 371
            P+T + F  LC  +KG        ++KG SFH VIKN+++Q G           +  G+  +      KH+   +    + K++ G + +ITTA  P LN    VFG VV+G D+V+++E  +TD   +PK+
Sbjct:   33 PKTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIKNFMVQGGDFTHGTGIGGESIYGRTFNDENFLVKHKIGCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRPKA 164          
BLAST of EY684932 vs. ExPASy Swiss-Prot
Match: NKTR_MOUSE (NK-tumor recognition protein OS=Mus musculus GN=Nktr PE=1 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.535e-11
Identity = 44/140 (31.43%), Postives = 73/140 (52.14%), Query Frame = 3
Query:    9 PETVDKFIDLC--QKGY---------FKGMSFHHVIKNYVIQAGH-SKDLAAADEWTSRGKIRSQLRTSPKHEAFMIGTV-KSKDSKGFELYITTAPIPDLNDKLIVFGRVVKGEDVVQEIEEVDTDEHYQPKSDVGIIN 389
            P+T   F+ LC  +KG          +KG +FH V+KN++IQ G  S+      E    G  + +        AF++    + K + G + +ITT P P L+   +VFG V+ G +V+++IE + TD   +P +DV +I+
Sbjct:   33 PKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVID 172          
The following BLAST results are available for this feature:
BLAST of EY684932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CP21C_ARATH1.093e-3354.89Peptidyl-prolyl cis-trans isomerase CYP21-3, mitoc... [more]
PPWD1_PONAB4.317e-1432.84Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_HUMAN4.317e-1432.84Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_BOVIN4.317e-1432.84Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_MOUSE1.256e-1332.84Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPIL2_RHIOR2.798e-1330.08Peptidyl-prolyl cis-trans isomerase-like 2 OS=Rhiz... [more]
CYP1_BRUMA1.063e-1232.86Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia ma... [more]
PPID_YARLI1.535e-1130.22Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia ... [more]
PPID_DICDI1.535e-1132.58Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
NKTR_MOUSE1.535e-1131.43NK-tumor recognition protein OS=Mus musculus GN=Nk... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-005-D12-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684932 ID=EY684932; Name=EY684932; organism=Citrus sinensis; type=EST; length=911bp
CCACGCGTCCGGAAACCGTGGATAAATTTATTGACTTGTGTCAAAAGGGG
TACTTCAAAGGTATGTCTTTCCATCATGTGATAAAAAACTATGTCATTCA
AGCTGGGCATTCCAAGGATCTTGCAGCTGCTGATGAATGGACATCAAGAG
GGAAGATCCGCAGTCAGCTGAGGACCAGTCCGAAGCATGAGGCGTTTATG
ATTGGAACTGTAAAATCTAAAGACAGCAAAGGATTTGAGCTATACATTAC
AACTGCACCAATACCAGATTTAAATGATAAGCTTATTGTGTTTGGACGAG
TAGTGAAGGGTGAGGATGTGGTGCAGGAAATTGAAGAGGTGGATACAGAT
GAGCACTATCAGCCTAAGTCAGATGTAGGGATCATCAATGTGACACTAAA
GCATGCGATATGAGGATGTATGCTAAGCTACCGAAAAGATTTTACACCTA
GCCAAGTTTCTTGTTGTGCTATTGATTTTCGTATTAATCTTGTATTGCTG
CTGCTAGAACGCTTGGCTCAGGTTTCCCTCTCCCTGTCCCTCCCCGGTTA
TCGCCCTGGACGGAGAAGAGGGACCAAAGAACGGACGGTGACCTGACCGG
AAACCCCACGCGGGGCACGAGCCCGCCCCACAATACCCCCAATTCGGCCA
TGCCAGACAGAACGGTAGATGGGCGCCACCCAACCCGGGCGCGTAGCGCG
AACGGCACAGCACCAAACCCAAGACCACGAAACCCGGAGCACCAACGAAA
AAACACCAACGACCGCGCCAAAGCAACCCCAATCAGGCCCACACGCCCCA
GCCTCAGCGAAGCCGCACACAGACGCCCCGACACACCAGCCCGCCGCCGC
CGACCGCACTACGCCGCCAAACCGACGAGCTCCACGAGGGGGAACCAGGG
CGAAACGCAAC
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