EY684888

Overview
NameEY684888
Unique NameEY684888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.915e-38
Identity = 64/94 (68.09%), Postives = 77/94 (81.91%), Query Frame = 2 
Query:  194 SNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            SNG R QC+KVWPP GLKK+ETLSYLPPLSDE L +EI+YL+R+ WIPCLEF+LE G+VYREHH +P YY+GRYWT  K+ MFG     QV+K+
Sbjct:   50 SNGGRVQCMKVWPPIGLKKYETLSYLPPLSDEALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKE 143

HSP 2 Score: 36.1946 bits (82), Expect = 1.915e-38
Identity = 15/24 (62.50%), Postives = 18/24 (75.00%), Query Frame = 1 
Query:  118 PFNGLTSSTAFPWTNKTNNDFTSI 189
            PF GL S+ AFP T K NNDF+S+
Sbjct:   25 PFTGLKSNVAFPVTKKANNDFSSL 48
[Close]
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS_MEDSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.496e-38
Identity = 60/95 (63.16%), Postives = 78/95 (82.11%), Query Frame = 2 
Query:  191 ASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            ASNG R  C++VWPP G KKFETLSYLPPL++E L +E+ YL+R GWIPCLEF+LEKG+VYRE+H++P YY+GRYWT  ++ +FG    +QVLK+
Sbjct:   49 ASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEVEYLIRKGWIPCLEFELEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKE 143

HSP 2 Score: 38.891 bits (89), Expect = 2.496e-38
Identity = 17/31 (54.84%), Postives = 19/31 (61.29%), Query Frame = 1 
Query:  118 PFNGLTSSTAFPWTNKTNNDFTSICKQRSKI 210
            PF GL SS  FP T KTNND TSI     ++
Sbjct:   25 PFTGLKSSAGFPVTKKTNNDITSIASNGGRV 55
[Close]
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS_BETVE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.578e-37
Identity = 63/95 (66.32%), Postives = 78/95 (82.11%), Query Frame = 2 
Query:  191 ASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            ASNG R QC++VWPP GLKKFETLSYLPPLS E L +E++YLLR   IPCLEF+LE G+VYREH+++P YY+GRYWT  K+ MFG +  +QVLK+
Sbjct:   51 ASNGGRVQCMQVWPPLGLKKFETLSYLPPLSSEQLAKEVDYLLRKNLIPCLEFELEHGFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKE 145

HSP 2 Score: 36.1946 bits (82), Expect = 4.578e-37
Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 1 
Query:  118 PFNGLTSSTAFPWTNKTNNDFTSICKQRSKI 210
            PF  L S++AFP T KTNND TSI     ++
Sbjct:   27 PFTCLKSTSAFPVTQKTNNDITSIASNGGRV 57
[Close]
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.319e-36
Identity = 61/95 (64.21%), Postives = 77/95 (81.05%), Query Frame = 2 
Query:  191 ASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            ASNG R QC++VWPP G+KKFETLSYLPPLS+E+LL+E+ YLL +GW+PCLEF+   G+VYREH  TP YY+GRYWT  K+ MFG   P+QV+ +
Sbjct:   50 ASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAE 144

HSP 2 Score: 33.8834 bits (76), Expect = 1.319e-36
Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 1 
Query:  118 PFNGLTSSTAFPWTNKTNNDFTSICKQRSKI 210
            PFNGL S +AFP T K NND TS+     ++
Sbjct:   27 PFNGLKSISAFPVTRK-NNDITSVASNGGRV 56
[Close]
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.799e-36
Identity = 67/127 (52.76%), Postives = 87/127 (68.50%), Query Frame = 2 
Query:  194 SNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD----DAGGPERNIHIFSTELSDFTTTRPVQRIT 562
            SNG R  C++VWPP G KKFETLSYLPPL+DE LL+E+ YLLR GW+PC+EF+LEKG+V+R+++ +P YY+GRYWT  ++ +FG     QVLK+     A  PE  I I       F   R VQ I+
Sbjct:   48 SNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIG-----FDNVRQVQCIS 169

HSP 2 Score: 35.4242 bits (80), Expect = 3.799e-36
Identity = 18/32 (56.25%), Postives = 20/32 (62.50%), Query Frame = 1 
Query:  115 TPFNGLTSSTAFPWTNKTNNDFTSICKQRSKI 210
            TPF GL SS  FP T K NND TSI    S++
Sbjct:   23 TPFTGLKSSAGFPVTKK-NNDITSITSNGSRV 53
[Close]
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS_MANES (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Manihot esculenta PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 4.947e-36
Identity = 62/94 (65.96%), Postives = 72/94 (76.60%), Query Frame = 2 
Query:  194 SNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            SNG + QC+KVWP  G+KKFETLSYLPPL+ E L  E+ YLLRSGWIPCLEF+LE G VYREH + P YY+GRYWT  K+ MFG     QVLK+
Sbjct:   52 SNGGKVQCMKVWPTLGMKKFETLSYLPPLTREQLASEVEYLLRSGWIPCLEFELEHGLVYREHARVPGYYDGRYWTMWKLPMFGCTDAAQVLKE 145

HSP 2 Score: 36.5798 bits (83), Expect = 4.947e-36
Identity = 16/31 (51.61%), Postives = 19/31 (61.29%), Query Frame = 1 
Query:  118 PFNGLTSSTAFPWTNKTNNDFTSICKQRSKI 210
            PF GL S+  FP T KTN+D TSI     K+
Sbjct:   27 PFTGLKSTPVFPTTRKTNSDITSITSNGGKV 57
[Close]
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 4.949e-36
Identity = 62/95 (65.26%), Postives = 75/95 (78.95%), Query Frame = 2 
Query:  191 ASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            ASNG R QC++VWPP G KKFETLSYLP L D  L +E+ YLLR GWIPCLEF+LE G+VYREH+++P YY+GRYWT  K+ MFG    +QVLK+
Sbjct:   47 ASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKE 141

HSP 2 Score: 33.4982 bits (75), Expect = 4.949e-36
Identity = 16/31 (51.61%), Postives = 18/31 (58.06%), Query Frame = 1 
Query:  118 PFNGLTSSTAFPWTNKTNNDFTSICKQRSKI 210
            PF GL S   FP T KTNND TSI     ++
Sbjct:   24 PFTGLKSMAGFP-TRKTNNDITSIASNGGRV 53
[Close]
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 6.444e-36
Identity = 60/95 (63.16%), Postives = 76/95 (80.00%), Query Frame = 2 
Query:  191 ASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            ASNG R QC++VWPP G KKFETLSYLPPLS+E+L++E+ YLL +GW+PCLEF+   G+VYREH  TP YY+GRYWT  K+ MFG   P+QV+ +
Sbjct:   50 ASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAE 144

HSP 2 Score: 33.8834 bits (76), Expect = 6.444e-36
Identity = 16/31 (51.61%), Postives = 20/31 (64.52%), Query Frame = 1 
Query:  118 PFNGLTSSTAFPWTNKTNNDFTSICKQRSKI 210
            PFNGL S +AFP T K NND TS+     ++
Sbjct:   27 PFNGLKSVSAFPVTRK-NNDITSVASNGGRV 56
[Close]
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.444e-36
Identity = 61/95 (64.21%), Postives = 73/95 (76.84%), Query Frame = 2 
Query:  191 ASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            ASNG R  C+KVWPP G KKFETLSYLP LSD  L +E++YLLR+ WIPC+EF+LE G+VYREH  TP YY+GRYWT  K+ +FG     QVLK+
Sbjct:   47 ASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKE 141

HSP 2 Score: 38.1206 bits (87), Expect = 6.444e-36
Identity = 17/31 (54.84%), Postives = 19/31 (61.29%), Query Frame = 1 
Query:  118 PFNGLTSSTAFPWTNKTNNDFTSICKQRSKI 210
            PF GL SS AFP T KTN D TSI     ++
Sbjct:   23 PFTGLKSSAAFPVTRKTNTDITSIASNGGRV 53
[Close]
BLAST of EY684888 vs. ExPASy Swiss-Prot
Match: RBS3B_ARATH (Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.444e-36
Identity = 61/95 (64.21%), Postives = 73/95 (76.84%), Query Frame = 2 
Query:  191 ASNGVRFQCVKVWPPTGLKKFETLSYLPPLSDETLLREINYLLRSGWIPCLEFQLEKGWVYREHHKTPRYYNGRYWTK*KMTMFGRHKPTQVLKD 475
            ASNG R  C+KVWPP G KKFETLSYLP LSD  L +E++YLLR+ WIPC+EF+LE G+VYREH  TP YY+GRYWT  K+ +FG     QVLK+
Sbjct:   47 ASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKE 141

HSP 2 Score: 38.1206 bits (87), Expect = 6.444e-36
Identity = 17/31 (54.84%), Postives = 19/31 (61.29%), Query Frame = 1 
Query:  118 PFNGLTSSTAFPWTNKTNNDFTSICKQRSKI 210
            PF GL SS AFP T KTN D TSI     ++
Sbjct:   23 PFTGLKSSAAFPVTRKTNKDITSIASNGGRV 53
The following BLAST results are available for this feature:
BLAST of EY684888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 104
Match NameE-valueIdentityDescription
RBS_LACSA1.915e-3868.09Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MEDSA2.496e-3863.16Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_BETVE4.578e-3766.32Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS4_MESCR1.319e-3664.21Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS_TRIRP3.799e-3652.76Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MANES4.947e-3665.96Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOYBN4.949e-3665.26Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_MESCR6.444e-3663.16Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_RAPSA6.444e-3664.21Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3B_ARATH6.444e-3664.21Ribulose bisphosphate carboxylase small chain 3B, ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-H08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684888 ID=EY684888; Name=EY684888; organism=Citrus sinensis; type=EST; length=947bp
ATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAAACAAAAAAGA
AAAACAACAAAACCCAAAAGCCACCGCGGAGCGGCGCCTCTAAAGACACA
AGACATTATGAGACACCCCCTTCAACGGGCTCACCTCTTCTACTGCTTTC
CCTTGGACCAATAAGACCAACAATGACTTTACTTCCATTTGCAAGCAACG
GAGTAAGATTCCAATGCGTGAAGGTGTGGCCACCAACTGGCTTGAAGAAG
TTCGAGACTCTCTCATACCTCCCGCCGCTGTCCGATGAAACTTTGCTCAG
GGAAATCAATTACCTTCTCCGCTCCGGCTGGATTCCCTGCTTGGAATTCC
AGCTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGACACCAAGATAC
TACAATGGACGCTACTGGACAAAGTGAAAGATGACCATGTTTGGGCGCCA
CAAACCAACCCAGGTATTAAAAGACGATGCGGGAGGTCCCGAACGAAACA
TCCACATCTTTTCGACCGAACTATCTGACTTCACAACAACCCGTCCAGTG
CAGCGAATCACCCTCCAACTCCCGCAAACCCACCACACAAGCACACGACC
CGGACAAAACAGGGGGCAACCGAACCCCCGGAACAAATAGCACCAAAAAC
AACATAACAACCCCCCCGAACGCGTAGCTGCGCGCACCGAACAGCCACCA
ATCACCGATGAGAAACCGAAAAAAAGAAAAGCCTACCTCAATCCAAACAA
CCAATTCGTAAATGCCAACCACCCAAAAACAAAACGCAAAATACAACCAT
GCCACGCTACCACAGCCGCCACTTACACCCAAACAAGAAGGCCGAAACAC
GGACCCAAGCAGCAACGAACATGCCCCCGCCTTCCACACCACCCGCAGAC
CCCAGCAAGCGCACACGTAATCACGCCGTTACCGCAAACACCGCACG
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