EY684879

Overview
NameEY684879
Unique NameEY684879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9921 contig Csv1_Contig9921:416..947. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY684879 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.040e-17
Identity = 42/46 (91.30%), Postives = 46/46 (100.00%), Query Frame = 1
Query:    1 LRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 138
            LRLPTDENLLSQIKDGFAEGKDLVV+VMS+MGEE+IC+LKDIGPKN
Sbjct:  115 LRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160          
BLAST of EY684879 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.751e-17
Identity = 41/45 (91.11%), Postives = 45/45 (100.00%), Query Frame = 1
Query:    1 LRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 135
            LRLPTD+NLL+QIKDGFAEGKDLVV+VMS+MGEEQICALKDIGPK
Sbjct:  115 LRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of EY684879 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.462e-15
Identity = 38/45 (84.44%), Postives = 45/45 (100.00%), Query Frame = 1
Query:    1 LRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 135
            L+LPTD++LL+QIKDGFA+GKDLVV+VMS+MGEEQICALKDIGPK
Sbjct:  115 LKLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of EY684879 vs. ExPASy Swiss-Prot
Match: IF5A1_MEDSA (Eukaryotic translation initiation factor 5A-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.462e-15
Identity = 39/46 (84.78%), Postives = 45/46 (97.83%), Query Frame = 1
Query:    1 LRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPKN 138
            L+LPTD++LL+QIKDGFAEGKDLVV+VMS+MGEEQICALKDIG KN
Sbjct:  116 LKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGGKN 161          
BLAST of EY684879 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.494e-15
Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    1 LRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 135
            LRLPTDENLLS IKDGFAEGKDLVV+VMS+MGEEQI ALKDIGPK
Sbjct:  115 LRLPTDENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
BLAST of EY684879 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.257e-15
Identity = 40/45 (88.89%), Postives = 44/45 (97.78%), Query Frame = 1
Query:    1 LRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 135
            LRLPTD++LLSQIKDGFAEGKDLVV+VMS+MGEEQI ALKDIGPK
Sbjct:  115 LRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
BLAST of EY684879 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.253e-15
Identity = 38/45 (84.44%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    1 LRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 135
            L+LPTD+ LL+QIKDGF EGKDLVV+VMS+MGEEQICALKDIGPK
Sbjct:  115 LKLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of EY684879 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.555e-15
Identity = 36/45 (80.00%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    1 LRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 135
            LRLPTD+ LL+Q+KDGFAEGKDLV++VMS+MGEEQIC +KDIGPK
Sbjct:  115 LRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of EY684879 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 5.555e-15
Identity = 36/45 (80.00%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    1 LRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 135
            LRLPTD+ LL+Q+KDGFAEGKDLV++VMS+MGEEQIC +KDIGPK
Sbjct:  115 LRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of EY684879 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.255e-15
Identity = 36/45 (80.00%), Postives = 43/45 (95.56%), Query Frame = 1
Query:    1 LRLPTDENLLSQIKDGFAEGKDLVVTVMSSMGEEQICALKDIGPK 135
            LRLPTD+NLL+ IKDGFAEGKDLV++VMS+MGEEQIC +KD+GPK
Sbjct:  115 LRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
The following BLAST results are available for this feature:
BLAST of EY684879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
IF5A_MANES2.040e-1791.30Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A2_NICPL7.751e-1791.11Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A2_MEDSA1.462e-1584.44Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A1_MEDSA1.462e-1584.78Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A3_SOLLC2.494e-1591.11Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A4_SOLTU3.257e-1588.89Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A_SENVE4.253e-1584.44Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A5_SOLTU5.555e-1580.00Eukaryotic translation initiation factor 5A-5 OS=S... [more]
IF5A1_SOLLC5.555e-1580.00Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A1_TOBAC7.255e-1580.00Eukaryotic translation initiation factor 5A-1 OS=N... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-G10-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684879 ID=EY684879; Name=EY684879; organism=Citrus sinensis; type=EST; length=532bp
CTGAGGCTTCCTACCGATGAAAATCTGCTTAGCCAGATTAAAGATGGGTT
TGCTGAAGGAAAAGACCTTGTGGTGACCGTTATGTCGTCAATGGGAGAGG
AGCAGATCTGTGCCCTTAAGGACATTGGTCCTAAGAATTAACTATAATCC
CATGGCATTAGCTTTGGCTGATAGCAGGAGAACTCTTTCTTATGTTGCCA
ACATGGAGACTATCTACCATCCATGTCCACAACAAACTTCCATTAAGATA
GTATTTTGGCTGTGTATTAAAATATCGTCGTGCTTGTGATAAAGGAAGTG
GAAAGAAAGCAGGTGTCGTCAATCTCCTGTTGAACGAAATTTATGTTGAC
AGCATCTCGGACTTATATATATTTTACTATTTTATTAAATCCTTGTCTAT
TATGTTTTGAGTTTGCAGAACTAATTTTGGGATTTCGCTTTCTCCTTTAT
TCTCTTATAATAATTAGCCTCATTTCCGTATCCCCCAACACCACGAAAAA
AAACAACAACACAAAAGCGAAAACCCACAGGG
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