EY684875

Overview
NameEY684875
Unique NameEY684875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length905
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7122 contig Csv1_Contig7122:290..1194. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY684875 vs. ExPASy Swiss-Prot
Match: DME_ARATH (Transcriptional activator DEMETER OS=Arabidopsis thaliana GN=DME PE=1 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 1.184e-64
Identity = 125/221 (56.56%), Postives = 154/221 (69.68%), Query Frame = 2
Query:   20 NVMLQD---SSALVALTAEAASMPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDS-KLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPKTSLENKTSLLTKLK 670
            N+ LQ+   S ALVAL     S+PT KLK  + LRTEH VY LPD+H LL G D+R+PDDPSPYLLAIW+PGE+ NS   P+ +C  K S K+C  E C  CNS+ E N+  VRGT+LIPCRTA RG FPLNGTYFQVNE+FADHE+S  PI+VPR  I +L R  V FG+S T++F  L   QIQ  FW+GFVCVRGF+++ R P+  +       +KLK
Sbjct: 1763 NMELQEGDMSKALVALHPTTTSIPTPKLKNISRLRTEHQVYELPDSHRLLDGMDKREPDDPSPYLLAIWTPGETANSAQPPEQKCGGKASGKMCFDETCSECNSLREANSQTVRGTLLIPCRTAMRGSFPLNGTYFQVNELFADHESSLKPIDVPRDWIWDLPRRTVYFGTSVTSIFRGLSTEQIQFCFWKGFVCVRGFEQKTRAPRPLMARLHFPASKLK 1983          
BLAST of EY684875 vs. ExPASy Swiss-Prot
Match: ROS1_ARATH (Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 SV=2)

HSP 1 Score: 244.202 bits (622), Expect = 7.675e-64
Identity = 127/231 (54.98%), Postives = 156/231 (67.53%), Query Frame = 2
Query:    5 RVRMNNVMLQD---SSALVALTAEAASMPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSK-DSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPKTSLENKTSLLTKLKKEAGN 685
            ++  +N  LQD   SSALVALTAE AS+P  KLK  + LRTEH VY LPD H LL   ++R+PDDP  YLLAIW+PGE+ +S+      C  + +  LC+ E C+SCNS+ E  + IVRGTILIPCRTA RG FPLNGTYFQVNEVFADH +S +PINVPR  I  L R  V FG+S  T+F  L   +IQ  FW+G+VCVRGFDR+ R PK  +       +KLK +  N
Sbjct: 1161 KIMEHNKELQDGNMSSALVALTAETASLPMPKLKNISQLRTEHRVYELPDEHPLLAQLEKREPDDPCSYLLAIWTPGETADSIQPSVSTCIFQANGMLCDEETCFSCNSIKETRSQIVRGTILIPCRTAMRGSFPLNGTYFQVNEVFADHASSLNPINVPRELIWELPRRTVYFGTSVPTIFKGLSTEKIQACFWKGYVCVRGFDRKTRGPKPLIARLHFPASKLKGQQAN 1391          
BLAST of EY684875 vs. ExPASy Swiss-Prot
Match: DML3_ARATH (DEMETER-like protein 3 OS=Arabidopsis thaliana GN=DML3 PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 2.024e-56
Identity = 114/209 (54.55%), Postives = 141/209 (67.46%), Query Frame = 2
Query:   11 RMNNVMLQDSSALVALTAEAASMPT---RKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDSKLCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFVCVRGFDRRYRCPK 628
            RM++   + S ALV  T E A +P    RK+K    LRTEH VYVLPD HELL  F+RR  DDPSPYLLAIW PGE+ +S   P+ +C+S  SKLC  + C  C ++ E+N+ I RGTILIPCRTA RG FPLNGTYFQ NEVFADHETS +PI   R     L +  +  GS+ T++F  LD R+I+  FW GF+C+R FDR+ R PK
Sbjct:  813 RMSSSDEEISKALVIPTPENACIPIKPPRKMKYYNRLRTEHVVYVLPDNHELLHDFERRKLDDPSPYLLAIWQPGETSSSFVPPKKKCSSDGSKLCKIKNCSYCWTIREQNSNIFRGTILIPCRTAMRGAFPLNGTYFQTNEVFADHETSLNPIVFRRELCKGLEKRALYCGSTVTSIFKLLDTRRIELCFWTGFLCLRAFDRKQRDPK 1021          
BLAST of EY684875 vs. ExPASy Swiss-Prot
Match: DML2_ARATH (DEMETER-like protein 2 OS=Arabidopsis thaliana GN=DML2 PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.461e-48
Identity = 96/186 (51.61%), Postives = 124/186 (66.67%), Query Frame = 2
Query:   38 SSALVALTAEAASMPTRKLKRCAHLRTEHHVYVLPDAHELLRGFDRRDPDDPSPYLLAIWSPGESPNSVGSPQYRCNSKDSK--LCNSEICYSCNSVCERNAGIVRGTILIPCRTANRGRFPLNGTYFQVNEVFADHETSHHPINVPRHTIANLRREIVCFGSSATTLFNALDMRQIQEYFWRGFV 589
            S  LV L+  AA++P RKLK    LRTEHHV+ LPD H +L GF+RR+ +D  PYLLAIW+PGE+ NS+  P+ RC   +S   LCN   C+ CN   E  +  VRGTILIPCRTA RG FPLNGTYFQ NEVFADH++S +PI+VP   I +L+R +   GSS +++   L +  I+  F  G +
Sbjct: 1090 SHDLVVLSTYAAAIPRRKLKIKEKLRTEHHVFELPDHHSILEGFERREAEDIVPYLLAIWTPGETVNSIQPPKQRCALFESNNTLCNENKCFQCNKTREEESQTVRGTILIPCRTAMRGGFPLNGTYFQTNEVFADHDSSINPIDVPTELIWDLKRRVAYLGSSVSSICKGLSVEAIKYNFQEGML 1275          
The following BLAST results are available for this feature:
BLAST of EY684875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DME_ARATH1.184e-6456.56Transcriptional activator DEMETER OS=Arabidopsis t... [more]
ROS1_ARATH7.675e-6454.98Protein ROS1 OS=Arabidopsis thaliana GN=ROS1 PE=1 ... [more]
DML3_ARATH2.024e-5654.55DEMETER-like protein 3 OS=Arabidopsis thaliana GN=... [more]
DML2_ARATH3.461e-4851.61DEMETER-like protein 2 OS=Arabidopsis thaliana GN=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-G04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684875 ID=EY684875; Name=EY684875; organism=Citrus sinensis; type=EST; length=905bp
CCCACGCGTCCGGATGAACAATGTCATGCTTCAAGACTCCAGTGCTTTAG
TTGCTTTGACTGCAGAAGCTGCATCCATGCCTACAAGGAAACTGAAGAGA
TGTGCTCATTTACGCACAGAGCACCATGTCTATGTACTTCCAGATGCACA
CGAACTACTTCGAGGGTTTGATAGGCGAGATCCTGATGATCCATCTCCCT
ACCTTCTTGCGATATGGTCACCAGGTGAATCTCCGAATTCAGTTGGCTCA
CCACAGTACAGATGTAACTCCAAAGATTCCAAACTTTGCAATTCGGAGAT
ATGCTATTCTTGCAATAGTGTTTGTGAAAGAAATGCTGGTATAGTTCGCG
GAACAATTTTGATACCTTGTCGCACCGCAAATAGAGGCAGATTTCCATTG
AATGGAACATACTTTCAAGTTAATGAAGTATTTGCAGACCATGAAACGAG
CCATCACCCCATTAATGTTCCTAGGCACACGATTGCTAATCTACGAAGAG
AAATCGTCTGCTTTGGAAGTTCAGCAACAACATTGTTTAATGCTTTAGAC
ATGCGGCAGATTCAGGAATACTTTTGGAGAGGGTTTGTTTGTGTGAGAGG
ATTTGATAGAAGATACCGGTGTCCCAAAACCTCCTTGGAAAATAAAACTT
CACTGCTCACCAAGTTAAAAAAGGAGGCTGGGAACCACAAAATCAGAAAT
GAAACGTCGAATAAAAAATCTTAAAATGGCCCGAGGGCAAACCGGACGTT
TAAAACCTTAAAAAAATACCTCTCAAAAATTTTGGACTTTTAAGACGCTA
CCCTCAAAACACATATCCCACCAGTCCCAAACTTTATAAGAAGCACGGTG
TGCGGTGTCTGGAGCTGATCCGATAGCACCCAACACCGGATCAAGCCAGC
ACTTG
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