EY684871

Overview
NameEY684871
Unique NameEY684871
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684871_ssr596 microsatellite EY684871_ssr596:596..607. BLAST: Citrus ESTs to Prunus persica proteins V1
EY684871_ssr774 microsatellite EY684871_ssr774:774..789. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY684871 vs. ExPASy Swiss-Prot
Match: ALF_ORYSJ (Fructose-bisphosphate aldolase cytoplasmic isozyme OS=Oryza sativa subsp. japonica GN=FBA PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 8.605e-15
Identity = 38/43 (88.37%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 QKAQAAFLVRCKANSEATLGTYKGDAQLGEGAAESLHVKDYKY 129
            +KA+AAFL RCKANSEATLGTYKGDA LGEGA+ESLHVKDYKY
Sbjct:  316 EKARAAFLTRCKANSEATLGTYKGDAVLGEGASESLHVKDYKY 358
[Close]
BLAST of EY684871 vs. ExPASy Swiss-Prot
Match: ALF_CICAR (Fructose-bisphosphate aldolase, cytoplasmic isozyme OS=Cicer arietinum GN=ALDC PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.220e-12
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 QKAQAAFLVRCKANSEATLGTYKGDAQLGEGAAESLHVKDYKY 129
            + AQ A L R KANSEATLGTYKG++QLGEGA+ESLHVKDYKY
Sbjct:  317 KNAQDALLTRAKANSEATLGTYKGNSQLGEGASESLHVKDYKY 359
The following BLAST results are available for this feature:
BLAST of EY684871 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ALF_ORYSJ8.605e-1588.37Fructose-bisphosphate aldolase cytoplasmic isozyme... [more]
ALF_CICAR5.220e-1279.07Fructose-bisphosphate aldolase, cytoplasmic isozym... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-F11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684871 ID=EY684871; Name=EY684871; organism=Citrus sinensis; type=EST; length=903bp
CAGAAGGCCCAGGCTGCTTTCCTTGTCAGGTGCAAGGCCAACTCTGAGGC
TACCCTCGGTACTTACAAGGGTGATGCCCAGCTTGGTGAAGGTGCCGCAG
AGTCTCTCCATGTCAAGGACTACAAATACTAAGCACAGTTGAAGCTTTGG
GTGTTGTGCTTTATGAACTTTATGAGAGTAAATGGCGGTATGAACATTAG
GTTGGCCCATTCTCATTCATAGTTTTAGAGCTTTTTCATATTTAGGTGGA
GCAATAAAAAGCTTGGGAACTTCCCGCTTGAGTGGTTTTGATCCAAACTA
CAGTGACACACTGTTTATGCTTACGCTTAAAACTATAATAACATCACCAG
CAAACCCAGGCAGTACCCCCACCACCCAAGCCGCGCCCCCGCGTGCGGGG
GGGGAGACACAAGCCAAGCCGCAACCCACCTGAAATCACGGAAATCCACC
CCTACCCGCACCCCACAAGAAGCCACCGGATACCAACGGATACACCCGCG
CGGCACGGCCCGCACGCCCCCCACCGACACACAAACAAAGCCCCTCCAGC
ACCCAATGCCGCACACCCCCCCTGACTGGGACCCCAGCCCACCCCCCCAC
CCACCCACGCAACCGCGCCTCCACACCACAAACCCCAACCAAATCGGGCA
AGAAGACAACAAGCACGCGACACAGACACACGGCTCATCACCAAACCCCA
AACGACCGTGCAGAAGCCACCCCCCCAGCCCAACCGCACTCCACCCGCGC
CACCACCTCACAACGCCACCCAGCCACCCACCCACCCACACTCCCCACCC
AGCGATAACCACAACTTCCCCGCCTTACACCTCACCGCACTCAAGCGACG
CCCGACGACGCACAGAACACCCCACACCGTCCCCGGACGGCCACCACTCC
CCA
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