EY684867

Overview
NameEY684867
Unique NameEY684867
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length972
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684867_ssr860 microsatellite EY684867_ssr860:860..869. BLAST: Citrus ESTs to SwissProt
Homology
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BLAST of EY684867 vs. ExPASy Swiss-Prot
Match: RND_ECOLI (Ribonuclease D OS=Escherichia coli (strain K12) GN=rnd PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.400e-11
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 2 
Query:   29 VDPYEVYRDAKLAWKLSRAQLAVLRELCAWREQQARARDLPRNRIIREHSLWPLAKSQPDNLAALGKIEDMHPRTVRQDGEFLLGLIKRAGSVPMDQWP 325
            V P + +RD   AW+L   QLA L+ L  WR ++AR RDL  N ++RE  LW +A+  P +L  L  +  +    +R  G+ LL L+++A ++P D  P
Sbjct:  194 VAPEDAWRDITNAWQLRTRQLACLQLLADWRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSL-GLSGSEIRFHGKTLLALVEKAQTLPEDALP 291
The following BLAST results are available for this feature:
BLAST of EY684867 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RND_ECOLI6.400e-1137.37Ribonuclease D OS=Escherichia coli (strain K12) GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-F06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684867 ID=EY684867; Name=EY684867; organism=Citrus sinensis; type=EST; length=972bp
GCAGCTGCAGTACGGTCCGGATTCCCGGGTCGACCCGTATGAGGTCTACC
GCGACGCCAAGCTGGCCTGGAAACTGTCTCGTGCCCAACTCGCGGTATTG
CGCGAACTGTGCGCCTGGCGTGAACAGCAAGCCCGCGCCCGGGACCTGCC
GCGCAACCGGATCATTCGTGAACACTCGTTATGGCCCCTGGCCAAATCCC
AGCCGGATAACCTCGCCGCGTTGGGCAAGATCGAAGACATGCACCCGCGC
ACGGTGCGCCAGGACGGCGAGTTCCTGCTGGGCCTGATCAAGCGTGCCGG
TAGCGTCCCCATGGACCAATGGCCACCGGCGGTTGCCGAGCCATTGCCGG
TGGACGCCGCCACGCTGATCAAGCAACTGCGCGCCCTGGGCCAGGCCGAG
GCTGAACGCCTGGACATGGCGCCGGAGCTGATGCTGCGCGGGGGAGGGGG
GGAAAAGCCCTGACCAATAACGGCTAATCCAATGAGGTCATACGAGAAGC
CACATTCGGATGCATGGCAGCCGCCAAGAAGCGAGGAGGGCACACACAAG
CAAAACGCAAGGCCCCGACAAAAACAGCCGGGGACAGGTGAAAAGAACAG
ACATCAAAGCACACAATCCTGCCACGCCGACCCACCCCGATCCGGTACCC
GCTCACGGACAAACGGCGCTCACAGCCACACGAGAGACGCTAGAGACAGG
ATGCAGCTCCGAACATAGCTAAACACAAAAAAAAGAGAAACAAGAGAACA
GATGGAAAGAGGAAAACAGGAAAAGAACGAGGACGGACAGACGAGCGGAC
CCCAGGAAGGACACACGGACAGACGACGAGCGGGAGGAAAGCGAAAGGAA
GGAAAGGGGGAGAGAGAGAAGAGGGGAGGAAGAGAGAAACACCCAGCGGA
AAGACAACAACAAAAAGAATACCTACCACAATCACAAACAAACAGGGCCG
ACAAAAGAAATGCGAAGAAAAC
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