EY684857

Overview
NameEY684857
Unique NameEY684857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length913
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684857_ssr459 microsatellite EY684857_ssr459:459..482. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684857 vs. ExPASy Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.746e-47
Identity = 103/184 (55.98%), Postives = 118/184 (64.13%), Query Frame = 1
Query:    4 SFKASPSQSSPNLADPLSPPPIVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSXXXXXXXXXXXXXVTMESQQRNLITLIC-MEMAXXXXXXXXXXXXXXXXFMDTSCFLDDNGIGSAWEPLWT 552
            S   +P  SS +   P   P +VLSPCAACKILRRRC E+CVLAPYFPPT+P KFTIAHRVFGASNIIKFLQELPESQR DAV+SMVYEA ARIRDPVYGCAGAI HLQ+QVS             V M+ Q+ NL+ LI  M+                  F++     + N     W+PLWT
Sbjct:    8 SVATTPIISSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSNLLELIYNMDQQQKQEQDNMSFESNDLGFLEDKS--NTNSSMLWWDPLWT 189          
BLAST of EY684857 vs. ExPASy Swiss-Prot
Match: LBD11_ARATH (LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.889e-47
Identity = 96/143 (67.13%), Postives = 107/143 (74.83%), Query Frame = 1
Query:    1 PSFKASPSQSSPNLADPLSPP--PIVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVSXXXXXXXXXXXXXVTMESQQRNLITLI 423
            P    SP+ S P    P  PP  P+VLSPCAACKILRRRC +KCVLAPYFPPT+P KFTIAHRVFGASNIIKFLQELPESQR DAV+SMVYEA AR+RDPVYGCAGAI HLQ+QVS             V M+ Q+ +L+ LI
Sbjct:   24 PVNSPSPTSSPPPPPSPQQPPQPPVVLSPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVNSMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQRSSLLELI 166          
BLAST of EY684857 vs. ExPASy Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 4.174e-33
Identity = 62/89 (69.66%), Postives = 76/89 (85.39%), Query Frame = 1
Query:   76 SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQVS 342
            SPCA+CK+LRRRC + C+ APYFPP +P+KF I H+VFGASN+ K LQELP  QRADAV+S+V+EA+AR+RDPVYGC GAI +LQ QVS
Sbjct:    7 SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVNSLVFEANARVRDPVYGCVGAISYLQNQVS 95          
BLAST of EY684857 vs. ExPASy Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.343e-31
Identity = 63/88 (71.59%), Postives = 71/88 (80.68%), Query Frame = 1
Query:   76 SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 339
            SPCAACK+LRRRC + CV +PYFP  EP KF   HRVFGASN+ K LQELP  QR DAVSSMVYEA+AR+RDPVYGC GAI  LQ+Q+
Sbjct:   12 SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQI 99          
BLAST of EY684857 vs. ExPASy Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 2.290e-31
Identity = 63/100 (63.00%), Postives = 78/100 (78.00%), Query Frame = 1
Query:   49 PLSPPPIVLS---PCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 339
            P+S PP  L+   PCAACK+LRRRC ++C  +PYF P EP+KF   H+VFGASN+ K L E+PESQRADA +S+VYEA+ R+RDPVYGC GAI  LQ+QV
Sbjct:   32 PMSGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISALQQQV 131          
BLAST of EY684857 vs. ExPASy Swiss-Prot
Match: LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 1.257e-29
Identity = 57/88 (64.77%), Postives = 69/88 (78.41%), Query Frame = 1
Query:   76 SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 339
            SPCAACK LRR+C+  C+ APYFPP EP+KF   H++FGASN+ K L EL   QR DAV+S+ YEA AR+RDPVYGC GAI +LQ+QV
Sbjct:   10 SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQV 97          
BLAST of EY684857 vs. ExPASy Swiss-Prot
Match: LBD3_ARATH (LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.641e-29
Identity = 59/90 (65.56%), Postives = 72/90 (80.00%), Query Frame = 1
Query:   73 LSPCAACKILRRRCV-EKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 339
            +SPCA CK+LRR+CV + CV APYFP  EPYKF I H++FGASN+ K LQEL E+ R+DAV SMVYEA+ARI+DPVYGC G I  L +Q+
Sbjct:   12 VSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQL 101          
BLAST of EY684857 vs. ExPASy Swiss-Prot
Match: LBD10_ARATH (LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 6.238e-29
Identity = 55/86 (63.95%), Postives = 66/86 (76.74%), Query Frame = 1
Query:   76 SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQK 333
            +PCAACK+LRR+C ++CV APYFPPT P KF   HRVFGASN+ K L +LP  QR D V+S+ YEA ARIRDP+YGC G I  LQ+
Sbjct:    4 TPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDTVNSLFYEAEARIRDPIYGCVGLISFLQQ 89          
BLAST of EY684857 vs. ExPASy Swiss-Prot
Match: LBD25_ARATH (LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.815e-28
Identity = 57/88 (64.77%), Postives = 66/88 (75.00%), Query Frame = 1
Query:   76 SPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 339
            SPCAACK LRR+C   CV APYFPP EP KF   HR+FGASN+ K L E+   QR DAV+S+ YEA AR++DPVYGC GAI  LQ+QV
Sbjct:   38 SPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAVNSLAYEAEARLKDPVYGCVGAISVLQRQV 125          
BLAST of EY684857 vs. ExPASy Swiss-Prot
Match: LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 2.370e-28
Identity = 58/117 (49.57%), Postives = 80/117 (68.38%), Query Frame = 1
Query:    1 PSFKASPSQSSPNLADPLSPPP----IVLSPCAACKILRRRCVEKCVLAPYFPPTEPYKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICHLQKQV 339
            P+F+ +   +   +   ++ PP      ++PCAACK+LRRRC E+C  +PYF P EP+KF   H+VFGASN+ K L E+ ESQR DA +S+VYEA+ R+RDP+YGC GAI  LQ  +
Sbjct:   22 PAFETTTDHAVMGIRRHVAVPPGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHI 138          
The following BLAST results are available for this feature:
BLAST of EY684857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
LBD1_ARATH1.746e-4755.98LOB domain-containing protein 1 OS=Arabidopsis tha... [more]
LBD11_ARATH3.889e-4767.13LOB domain-containing protein 11 OS=Arabidopsis th... [more]
LBD12_ARATH4.174e-3369.66LOB domain-containing protein 12 OS=Arabidopsis th... [more]
LBD4_ARATH1.343e-3171.59LOB domain-containing protein 4 OS=Arabidopsis tha... [more]
LBD15_ARATH2.290e-3163.00LOB domain-containing protein 15 OS=Arabidopsis th... [more]
LOB_ARATH1.257e-2964.77Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis th... [more]
LBD3_ARATH1.641e-2965.56LOB domain-containing protein 3 OS=Arabidopsis tha... [more]
LBD10_ARATH6.238e-2963.95LOB domain-containing protein 10 OS=Arabidopsis th... [more]
LBD25_ARATH1.815e-2864.77LOB domain-containing protein 25 OS=Arabidopsis th... [more]
LBD13_ARATH2.370e-2849.57LOB domain-containing protein 13 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-E08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684857 ID=EY684857; Name=EY684857; organism=Citrus sinensis; type=EST; length=913bp
CCAAGCTTTAAAGCTTCTCCTTCACAATCCTCTCCAAATCTTGCAGATCC
CCTCTCTCCGCCGCCTATAGTTCTTAGCCCTTGTGCTGCCTGCAAAATCC
TCCGCCGCAGATGCGTCGAGAAATGTGTTTTAGCTCCATATTTTCCACCA
ACCGAACCATACAAGTTCACCATTGCTCATAGGGTCTTCGGTGCAAGCAA
TATCATCAAGTTCTTGCAGGAACTGCCAGAATCTCAACGAGCAGATGCAG
TGAGCAGCATGGTCTATGAAGCAAGTGCCAGAATCCGGGATCCTGTTTAC
GGCTGCGCCGGGGCTATTTGCCATCTCCAGAAACAAGTCAGTGAGCTTCA
GGCTCAGTTAGCCAAGGCACAGGCTGAGCTTGTCACCATGGAAAGCCAGC
AACGCAATTTAATAACTCTAATTTGCATGGAAATGGCACAATCTCAAGAA
CAAGTCTTGCAGCAGCAGCAGCAGCAGCAGCAACAGTTCATGGATACTAG
TTGTTTTTTGGATGACAATGGTATTGGATCAGCTTGGGAGCCTCTGTGGA
CATGATCAAGAGAAATTAAAGCAAGATTGTTGAAAATTTTAACCTTTTAA
GAGATTATTTACATAAAGCTAAACATACCTTAATTAATAAAAGTTTCTGA
ATCAATAATTAAAGTTATTTGCTGGCGCCGGTAAAAAAAAAAAAAAAAGG
CGGGCCGCTTTAAAGGATCCAAGCTTTACGAGCCGGGCGTGGCCAAGACC
TAACTTCTTCTAAACGGGTCACCAAAAATTAATCTACCTGGCACCAGATT
TAAAAACACGCCAGGCCGGGGAAAAAAACCGGTGGTGTGCACACACTTTA
ACCAGCCAACCAGCAGAAACACCCTTTCTAAACCAAATGGCGGAGAAAAG
TAAAAACAAGGAC
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