EY684844

Overview
NameEY684844
Unique NameEY684844
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length952
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684844_ssr303 microsatellite EY684844_ssr303:303..314. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY684844 vs. ExPASy Swiss-Prot
Match: ROC3_ORYSJ (Homeobox-leucine zipper protein ROC3 OS=Oryza sativa subsp. japonica GN=ROC3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.872e-13
Identity = 40/70 (57.14%), Postives = 47/70 (67.14%), Query Frame = 3 
Query:  111 NIGVQNNSA-------GCLLTVGLQVLGSTIPSAKLNLSSVNAINSHLCSTVQQITAALSNGTGTGTGCP 299
            N    NN+A       GCLLTVG+QVL S +PSAKLNLSSV AINSH+C+ + QITAAL +  G   G P
Sbjct:  809 NSSSNNNNADELLPPNGCLLTVGMQVLASAVPSAKLNLSSVTAINSHVCNAIHQITAALKSSAGGAGGEP 878
[Close]
BLAST of EY684844 vs. ExPASy Swiss-Prot
Match: ROC3_ORYSI (Homeobox-leucine zipper protein ROC3 OS=Oryza sativa subsp. indica GN=ROC3 PE=3 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 5.057e-13
Identity = 40/70 (57.14%), Postives = 46/70 (65.71%), Query Frame = 3 
Query:  111 NIGVQNNSA-------GCLLTVGLQVLGSTIPSAKLNLSSVNAINSHLCSTVQQITAALSNGTGTGTGCP 299
            N    NN+A       GCLLTVG+QVL S +PSAKLNLSSV AINSH+C+ + QITAAL    G   G P
Sbjct:  809 NSSSNNNNADELLPPNGCLLTVGMQVLASAVPSAKLNLSSVTAINSHVCNAIHQITAALKGSAGGAGGEP 878
[Close]
BLAST of EY684844 vs. ExPASy Swiss-Prot
Match: HDG5_ARATH (Homeobox-leucine zipper protein HDG5 OS=Arabidopsis thaliana GN=HDG5 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.775e-11
Identity = 44/91 (48.35%), Postives = 53/91 (58.24%), Query Frame = 3 
Query:    3 LGFVIVPVEPIKEXXXXXXXXXXXXXXMALSPEEANNIGVQNNSA-GCLLTVGLQVLGSTIPSAKLNLSSVNAINSHLCSTVQQITAALSN 272
            LGF IVPV P                     PE    I V ++S   CLLTVG+QVL S +P+AK NLS+V  IN+HLC+TV QIT+ALSN
Sbjct:  736 LGFSIVPVNP---------------------PE---GISVNSHSPPSCLLTVGIQVLASNVPTAKPNLSTVTTINNHLCATVNQITSALSN 802
The following BLAST results are available for this feature:
BLAST of EY684844 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ROC3_ORYSJ3.872e-1357.14Homeobox-leucine zipper protein ROC3 OS=Oryza sati... [more]
ROC3_ORYSI5.057e-1357.14Homeobox-leucine zipper protein ROC3 OS=Oryza sati... [more]
HDG5_ARATH2.775e-1148.35Homeobox-leucine zipper protein HDG5 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-D06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684844 ID=EY684844; Name=EY684844; organism=Citrus sinensis; type=EST; length=952bp
CATTAGGGTTTGTAATAGTCCCAGTTGAACCAATCAAAGAGAGTAACACT
ACTAGCGGCGACGGCAACGGCAATGGCAACTCTATGGCTTTGTCACCTGA
AGAAGCAAACAACATTGGAGTACAAAATAACTCAGCAGGTTGTTTACTCA
CTGTTGGCCTTCAAGTTCTTGGCAGCACAATCCCATCTGCCAAGCTCAAT
CTCTCTAGCGTTAACGCAATCAACAGCCATCTTTGCAGCACTGTGCAACA
AATCACCGCTGCTCTTAGCAATGGCACCGGCACCGGCACTGGCTGCCCTG
ATAACAACAACAACGGCACCGTTTTAGGGTCTTGGCAAGAGCCTGATGGT
GGTGGTGCACCTAAACAATAGGTGCGATCAATTTTCATCAGTTTCAAAAT
TACCAAAAACCTCCCCATTGGAAAAATTTACCTTCACTTAATCCCAAGGG
CATTTTATGGTTTTGGTAGAAACCCTAACTTTTGTTCTGTTGTATTTTGG
TGGCCCTTGGCCTAAAGTGGGGAGGTTAAGGGAAAATCTGACACGCCAGG
GGGCAAATTATACAAACAACTAAAACGCGAAGACGCACACAATTCTCTAC
ATCAACACGTGACGATAACACACCGACAGGAGAGAAAAACCCCCCGCCGC
CTGCCGGCGACGCAAACACCCCCACACCCGTCCCCAAACACCAACCGAAG
ATAGTACGAACGAGGCAAAAAAGCACAGACACAAGAGCGCAAGAACACAA
ACATCCGCAACCCGAAGACAAGCAGCAACGGAATCCAATACCATAATGCC
TCCCAAAAGACACACAATGACTCAACGCACAACGAACAACAACCGGCGAC
ACAAATGCACAAAGAAACTAAACAACGCACAACGCCCCCCATCCCGTACT
ATAACCACAACCAGCTCTACCATGACCGAAACCGCGCAAGCACGCAGACC
AC
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