EY684836

Overview
NameEY684836
Unique NameEY684836
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length947
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684836_ssr422 microsatellite EY684836_ssr422:422..431. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY684836 vs. ExPASy Swiss-Prot
Match: CUL4B_HUMAN (Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3)

HSP 1 Score: 209.149 bits (531), Expect = 2.916e-53
Identity = 100/135 (74.07%), Postives = 115/135 (85.19%), Query Frame = 1
Query:    1 RRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 405
            RRTLQSLACGK RVL K PKG+D+ED D F+ N+ F   L+RIK+N IQMKETVEE  STTERVFQDRQYQ+DAAIVRIMK RK LSH LL++E++ QLKFP+KPADLKKRIESLIDR+Y+ERDK NP  YNY+A
Sbjct:  761 RRTLQSLACGKARVLAKNPKGKDIEDGDKFICNDDFKHKLFRIKINQIQMKETVEEQASTTERVFQDRQYQIDAAIVRIMKMRKTLSHNLLVSEVYNQLKFPVKPADLKKRIESLIDRDYMERDKENPNQYNYIA 895          
BLAST of EY684836 vs. ExPASy Swiss-Prot
Match: CUL4A_HUMAN (Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 5.499e-52
Identity = 99/135 (73.33%), Postives = 114/135 (84.44%), Query Frame = 1
Query:    1 RRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 405
            RRTLQSLACGK RVL K PKG++VED D F+FN  F   L+RIK+N IQMKETVEE  STTERVFQDRQYQ+DAAIVRIMK RK L H LL++EL+ QLKFP+KP DLKKRIESLIDR+Y+ERDK+NP  Y+Y+A
Sbjct:  625 RRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNGEFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759          
BLAST of EY684836 vs. ExPASy Swiss-Prot
Match: CUL4A_MOUSE (Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.225e-51
Identity = 98/135 (72.59%), Postives = 114/135 (84.44%), Query Frame = 1
Query:    1 RRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 405
            RRTLQSLACGK RVL K PKG++VED D F+FN  F   L+RIK+N IQMKETVEE  STTERVFQDRQYQ+DAAIVRIMK RK L H LL++EL+ QLKFP+KP DLKKRIESLIDR+Y+ERDK++P  Y+Y+A
Sbjct:  625 RRTLQSLACGKARVLIKSPKGKEVEDGDKFIFNADFKHKLFRIKINQIQMKETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLKFPVKPGDLKKRIESLIDRDYMERDKDSPNQYHYVA 759          
BLAST of EY684836 vs. ExPASy Swiss-Prot
Match: CUL4_DICDI (Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.171e-34
Identity = 71/116 (61.21%), Postives = 90/116 (77.59%), Query Frame = 1
Query:   58 KGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 405
            K + +++ D+F+FN  F++ L++IKVN+IQ++ETVEEN  T E +  DRQYQVDAAIVRIMKTRK L+H LLI+EL   LKF  KP DLKKRIE LI++EYL RD  N  IYNY+A
Sbjct:  687 KTKVIDETDTFLFNSKFSSKLFKIKVNSIQIQETVEENQKTNENIISDRQYQVDAAIVRIMKTRKTLAHNLLISELVSLLKFQPKPVDLKKRIEILIEKEYLCRDPENAMIYNYMA 802          
BLAST of EY684836 vs. ExPASy Swiss-Prot
Match: CUL3_SCHPO (Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 3.589e-27
Identity = 66/139 (47.48%), Postives = 90/139 (64.75%), Query Frame = 1
Query:    1 RRTLQSLACGKVRVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMK--ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQL--KFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 405
            +R LQSLAC K ++L K PKGR+V   D F FNE F + L RIK++ +     E   E   T E+V + R++Q DA IVR+MK RKV  H  L+ E+ +QL  +F   P  +K+RIE+LI+REYL+R  +N +IY YLA
Sbjct:  647 KRNLQSLACAKYKILLKDPKGREVNAGDKFYFNENFVSNLARIKISTVAQTRVEDDSERKRTLEKVDESRKHQADACIVRVMKDRKVCEHNQLMAEVTRQLNPRFHPSPMMIKRRIEALIEREYLQRQADNGRIYEYLA 785          
BLAST of EY684836 vs. ExPASy Swiss-Prot
Match: CUL3_XENTR (Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.183e-26
Identity = 64/140 (45.71%), Postives = 92/140 (65.71%), Query Frame = 1
Query:    4 RTLQSLACGKV--RVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMK--ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLK--FPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 405
            R LQSLACGK   RVL K PK +++E    F  N+ FT+ L+R+K+  +  K  E+  E   T ++V  DR+++++AAIVRIMK+RK + H +L+ E+ QQLK  F   P  +KKRIE LI+REYL R   + ++Y Y+A
Sbjct:  629 RALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of EY684836 vs. ExPASy Swiss-Prot
Match: CUL3_HUMAN (Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2)

HSP 1 Score: 118.627 bits (296), Expect = 5.183e-26
Identity = 64/140 (45.71%), Postives = 93/140 (66.43%), Query Frame = 1
Query:    4 RTLQSLACGKV--RVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMK--ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLK--FPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 405
            R LQSLACGK   RVL K PK +++E+   F  N+ FT+ L+R+K+  +  K  E+  E   T ++V  DR+++++AAIVRIMK+RK + H +L+ E+ QQLK  F   P  +KKRIE LI+REYL R   + ++Y Y+A
Sbjct:  629 RALQSLACGKPTQRVLTKEPKSKEIENGHIFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of EY684836 vs. ExPASy Swiss-Prot
Match: CUL3B_XENLA (Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.183e-26
Identity = 64/140 (45.71%), Postives = 92/140 (65.71%), Query Frame = 1
Query:    4 RTLQSLACGKV--RVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMK--ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLK--FPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 405
            R LQSLACGK   RVL K PK +++E    F  N+ FT+ L+R+K+  +  K  E+  E   T ++V  DR+++++AAIVRIMK+RK + H +L+ E+ QQLK  F   P  +KKRIE LI+REYL R   + ++Y Y+A
Sbjct:  629 RALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of EY684836 vs. ExPASy Swiss-Prot
Match: CUL3A_XENLA (Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 5.183e-26
Identity = 64/140 (45.71%), Postives = 92/140 (65.71%), Query Frame = 1
Query:    4 RTLQSLACGKV--RVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMK--ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLK--FPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 405
            R LQSLACGK   RVL K PK +++E    F  N+ FT+ L+R+K+  +  K  E+  E   T ++V  DR+++++AAIVRIMK+RK + H +L+ E+ QQLK  F   P  +KKRIE LI+REYL R   + ++Y Y+A
Sbjct:  629 RALQSLACGKPTQRVLTKEPKSKEIESGHMFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of EY684836 vs. ExPASy Swiss-Prot
Match: CUL3_MOUSE (Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 6.769e-26
Identity = 64/140 (45.71%), Postives = 92/140 (65.71%), Query Frame = 1
Query:    4 RTLQSLACGKV--RVLQKLPKGRDVEDDDSFVFNEGFTAPLYRIKVNAIQMK--ETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKVLSHTLLITELFQQLK--FPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA 405
            R LQSLACGK   RVL K PK +++E    F  N+ FT+ L+R+K+  +  K  E+  E   T ++V  DR+++++AAIVRIMK+RK + H +L+ E+ QQLK  F   P  +KKRIE LI+REYL R   + ++Y Y+A
Sbjct:  629 RALQSLACGKPTQRVLTKEPKSKEIESGHIFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
The following BLAST results are available for this feature:
BLAST of EY684836 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CUL4B_HUMAN2.916e-5374.07Cullin-4B OS=Homo sapiens GN=CUL4B PE=1 SV=3[more]
CUL4A_HUMAN5.499e-5273.33Cullin-4A OS=Homo sapiens GN=CUL4A PE=1 SV=3[more]
CUL4A_MOUSE1.225e-5172.59Cullin-4A OS=Mus musculus GN=Cul4a PE=2 SV=1[more]
CUL4_DICDI5.171e-3461.21Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 ... [more]
CUL3_SCHPO3.589e-2747.48Cullin-3 OS=Schizosaccharomyces pombe GN=cul3 PE=1... [more]
CUL3_XENTR5.183e-2645.71Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1[more]
CUL3_HUMAN5.183e-2645.71Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2[more]
CUL3B_XENLA5.183e-2645.71Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1[more]
CUL3A_XENLA5.183e-2645.71Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1[more]
CUL3_MOUSE6.769e-2645.71Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-C08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684836 ID=EY684836; Name=EY684836; organism=Citrus sinensis; type=EST; length=947bp
AGGAGGACTCTACAGTCTCTTGCTTGCGGTAAAGTACGCGTCCTGCAAAA
GTTGCCAAAGGGAAGGGATGTGGAGGATGATGATTCATTTGTGTTCAATG
AAGGATTTACTGCTCCCCTTTATCGTATTAAGGTAAATGCTATACAGATG
AAGGAAACAGTGGAAGAAAACACTAGCACCACTGAAAGAGTATTTCAGGA
CCGTCAATATCAGGTGGATGCTGCCATTGTTCGGATAATGAAGACTAGAA
AAGTGTTGAGTCACACACTTCTAATAACCGAACTCTTCCAACAGCTGAAA
TTTCCTATAAAGCCGGCCGATCTGAAGAAAAGGATTGAGAGCCTTATCGA
TAGGGAGTACCTGGAGCGTGACAAGAACAATCCGCAGATATATAATTACC
TGGCCTAGTCCCCCATTTTGTCACACACACAAATGTGATGTTTTTCTTTG
CATGGCGGCGTAATCCAATGTTATCTCTCCCCTGTACACAAAGTCGTAAA
ATCCTTTTTTTTTACCTTCATCTTCTTAGCTTCTTCCTTCCTTAGCCCCC
AACCACCAGAGACCGAACTACAAACCGGCCCATACTTTCCAGAACACATC
ATACCCAACAAGGGCAGCCGAGACCCCACGAAGAACCGCACGCGACCTCA
CTGCCTCTGATCGCCCACAGAACCCCACCCCCCCGGACAACACACGCTCC
ACCCCAACCACAACTAACAACCCCCACCCCCAACCAGATAGAACACCCTG
ACACACCCCGTCCACGAAGAGACGACGGCGAAGAACCCTCCACCCAGCCA
GCCACAGCCCCCCAGACAATCCAACATAGACAGCCGCAAACCGAGTCACC
GCACAACAACAAACTAGGACAGCCACACGACCAACGCCTACGACCATACA
GTCCCAACCGCACGCAAGACATGCCACCCAGCTGACCCAAACCACCA
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