EY684833

Overview
NameEY684833
Unique NameEY684833
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length960
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684833_ssr333 microsatellite EY684833_ssr333:333..348. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY684833 vs. ExPASy Swiss-Prot
Match: Y1461_ARATH (Probable serine/threonine-protein kinase At1g54610 OS=Arabidopsis thaliana GN=At1g54610 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.024e-17
Identity = 50/99 (50.51%), Postives = 59/99 (59.60%), Query Frame = 1 
Query:    1 QANLDRRRLITHANAKSKSEKFPPPHQD-GTLGYPLASVHHIXXXXXXXXXXXSSTNFSY------PKAPIQTWSGPLMDPAAVGATRRKKHTTGDGHG 276
            Q+N+DRRRLITHANAKSKSEKFPPPHQD G +G PL +  HI           S T+ S+      P   +QTWSGPL  P   G +R+KK  T    G
Sbjct:  469 QSNVDRRRLITHANAKSKSEKFPPPHQDGGAMGVPLGASQHIDPTFIPRDMVPSFTSSSFNFSKDEPPTQVQTWSGPLGHP-ITGVSRKKKDNTKSSKG 566
The following BLAST results are available for this feature:
BLAST of EY684833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1461_ARATH2.024e-1750.51Probable serine/threonine-protein kinase At1g54610... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-004-C04-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684833 ID=EY684833; Name=EY684833; organism=Citrus sinensis; type=EST; length=960bp
CAAGCCAATCTTGATAGGCGGCGGCTAATAACACATGCAAATGCAAAGAG
TAAAAGTGAGAAGTTTCCTCCTCCCCACCAAGATGGAACACTTGGCTATC
CTTTGGCTTCAGTACACCACATTGATCCGGTGTTTGATCCTCCTGATGTC
CCTTTTAGTTCAACAAATTTCTCATATCCGAAGGCACCTATCCAAACTTG
GTCGGGCCCTTTGATGGACCCAGCGGCCGTGGGAGCCACAAGGAGAAAGA
AACACACCACAGGTGATGGACATGGGCACTCAAAGTCATCAAAGAAGGAG
TTACAGAAAGATAAGAATTCTTCACGGTTTTAAAAGAAAGAAAGAAAGAA
TGTAATATAAAATCTGTTTTTGGTAAGACTATTCATGAGGCTGCACTGCT
GATCCGGTGTTTCTTTAATCCAGAGCCCGGGAAGCCAGTTAATTGTATGG
AGAGTAGAGAAGGCTCCTTCTTACGACAAGTACAGGCTGGAGATTATTTA
TGTTTCAAATATTGTGTTTTCTAATAACTGGGAAGATTGGGAGAAAATGG
AGATACATGTAAACTGGTTCCCAGTACAAGGATGAATTCACACTACCACC
CTCAATTGCCGTTTCCAAGAGGCCACAACAATTCTCAGGCGGTTGCACGT
TATCAACAATCAACAATCCGAGCCTAAATCGGCCGACAACGCATGGAGAT
TGTAAACTAAGTGAGTATTGAAGCCTACAGTGACAGCACGCAAACCACGA
AGCGTCTCCAACGACATAACCGCTACACTCCAATCGAACGCGAAGCCCTC
GTCCCGACGCTCGACATAAACCCCCATACACGCCCGCGCTCCCAGCTCTC
CCCATAACACGCAACTAACAAACGACCTTGAACAGCCACTACCACGTACA
CTCCGAAATACAACCTACGTGACATCCAGAACTACTAGAAGGTTACAAAC
ATACCACACA
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