EY684738

Overview
NameEY684738
Unique NameEY684738
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684738_ssr726 microsatellite EY684738_ssr726:726..737. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of EY684738 vs. ExPASy Swiss-Prot
Match: FB84_ARATH (F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.161e-20
Identity = 50/115 (43.48%), Postives = 64/115 (55.65%), Query Frame = 2 
Query:   11 TWPDRSTGSRFTALQFPITEKDNRRPELTXXXXXXXXXXXXXFSCSRSIKS----TEGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNHPLPPWREAMEALTWGPSHKHGR 343
            TWP RS GSRF++L F      ++R  ++              S S S  S     E  DF+ LP+D+L KIAA F+ P L+AASLVCKSW   L P RE+M  + WG  +KHGR
Sbjct:    5 TWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSSSSSRPPSNEFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYKHGR 119

HSP 2 Score: 28.4906 bits (62), Expect = 7.161e-20
Identity = 17/46 (36.96%), Postives = 25/46 (54.35%), Query Frame = 1 
Query:  370 LGSFLRXXXXXSTLAMAEPGLMYCETDK**RL*ASYRQPAVLRDTL 507
            L SFL+     STLAM + GL+Y E  +  +    YR+ + L D +
Sbjct:  130 LDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAV 175
The following BLAST results are available for this feature:
BLAST of EY684738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB84_ARATH7.161e-2043.48F-box protein At1g70590 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-003-A08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684738 ID=EY684738; Name=EY684738; organism=Citrus sinensis; type=EST; length=890bp
TGAACGCTAGACATGGCCGGATCGATCGACCGGCTCTCGGTTCACAGCTC
TTCAATTCCCGATAACCGAGAAGGACAACCGCCGGCCAGAACTCACCGCC
AGTGCACGGAAGGCTAGAATCAAACGGCGCAGCCGCTTCAGCTGCTCACG
ATCAATAAAATCAACGGAGGGTCATGATTTCGCGAGCCTACCGTTCGATG
TCTTGAACAAAATCGCAGCGTCATTCACGCTGCCTCAACTGAGAGCGGCG
TCGCTGGTGTGCAAGTCATGGAACCACCCTCTTCCGCCGTGGAGAGAGGC
GATGGAGGCCCTCACATGGGGCCCTTCACACAAGCACGGACGACGGATTG
GCAAAAGGTGCACACCGTTCTCGGCTCGTTTTTGAGGGGGGGGGGGGGCG
GATCCACCCTTGCTATGGCTGAACCCGGACTGATGTATTGCGAAACGGAC
AAATGATAGCGCCTATAAGCGTCGTACCGACAACCCGCTGTCCTCCGGGA
CACTCTAGTGATGAGGCCCAGCACACAGCACGTGCTACCAAAAGCCACAG
ACACAGCCAAGACCAAGACACGACTACACCGGAACAGGAGCGAGGCACCA
AGGAACACGACGAAAACAGGACAAAACAAGACCACCGACAACGACACAAA
CAACTAGGAAAACCAAGACACGTACACCCCCAGCAGACGCAGAGCAAGAG
ACGCCCCCGGCCACACAACCAAGAAACACACACACACAACACCAAAAGAA
AAGAAGCCAGAAAACACAGAAGGCGAAACCAACAGCGAAAACACAAACAT
CAACCATAACCACCGAAACAACGCTAAACCCCTACCCCACCCAACGACCC
CCACGGCGAAGAGAACACAACGCCCAGCAGCCCACCCGCC
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