EY684727

Overview
NameEY684727
Unique NameEY684727
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length802
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684727 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.582e-14
Identity = 38/46 (82.61%), Postives = 44/46 (95.65%), Query Frame = 1
Query:    1 LRLPTAQNLLSQIKDGFADRKDLVVTVMSSMGEEQICALKDIGPKN 138
            LRLPT +NLLSQIKDGFA+ KDLVV+VMS+MGEE+IC+LKDIGPKN
Sbjct:  115 LRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160          
BLAST of EY684727 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.602e-14
Identity = 38/45 (84.44%), Postives = 42/45 (93.33%), Query Frame = 1
Query:    1 LRLPTAQNLLSQIKDGFADRKDLVVTVMSSMGEEQICALKDIGPK 135
            LRLPT  NLL+QIKDGFA+ KDLVV+VMS+MGEEQICALKDIGPK
Sbjct:  115 LRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of EY684727 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.339e-13
Identity = 37/45 (82.22%), Postives = 42/45 (93.33%), Query Frame = 1
Query:    1 LRLPTAQNLLSQIKDGFADRKDLVVTVMSSMGEEQICALKDIGPK 135
            L+LPT  +LL+QIKDGFAD KDLVV+VMS+MGEEQICALKDIGPK
Sbjct:  115 LKLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of EY684727 vs. ExPASy Swiss-Prot
Match: IF5A1_MEDSA (Eukaryotic translation initiation factor 5A-1 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.679e-13
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = 1
Query:    1 LRLPTAQNLLSQIKDGFADRKDLVVTVMSSMGEEQICALKDIGPKN 138
            L+LPT  +LL+QIKDGFA+ KDLVV+VMS+MGEEQICALKDIG KN
Sbjct:  116 LKLPTDDSLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGGKN 161          
BLAST of EY684727 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.933e-12
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1
Query:    1 LRLPTAQNLLSQIKDGFADRKDLVVTVMSSMGEEQICALKDIGPK 135
            LRLPT  +LLSQIKDGFA+ KDLVV+VMS+MGEEQI ALKDIGPK
Sbjct:  115 LRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
BLAST of EY684727 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.933e-12
Identity = 37/45 (82.22%), Postives = 41/45 (91.11%), Query Frame = 1
Query:    1 LRLPTAQNLLSQIKDGFADRKDLVVTVMSSMGEEQICALKDIGPK 135
            LRLPT +NLLS IKDGFA+ KDLVV+VMS+MGEEQI ALKDIGPK
Sbjct:  115 LRLPTDENLLSLIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
BLAST of EY684727 vs. ExPASy Swiss-Prot
Match: IF5A_SENVE (Eukaryotic translation initiation factor 5A OS=Senecio vernalis GN=EIFSV1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.525e-12
Identity = 35/45 (77.78%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 LRLPTAQNLLSQIKDGFADRKDLVVTVMSSMGEEQICALKDIGPK 135
            L+LPT   LL+QIKDGF + KDLVV+VMS+MGEEQICALKDIGPK
Sbjct:  115 LKLPTDDALLTQIKDGFGEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of EY684727 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 LRLPTAQNLLSQIKDGFADRKDLVVTVMSSMGEEQICALKDIGPK 135
            LRLPT   LL+Q+KDGFA+ KDLV++VMS+MGEEQIC +KDIGPK
Sbjct:  115 LRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of EY684727 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.298e-12
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 LRLPTAQNLLSQIKDGFADRKDLVVTVMSSMGEEQICALKDIGPK 135
            LRLPT   LL+Q+KDGFA+ KDLV++VMS+MGEEQIC +KDIGPK
Sbjct:  115 LRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of EY684727 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.307e-12
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1
Query:    1 LRLPTAQNLLSQIKDGFADRKDLVVTVMSSMGEEQICALKDIGPK 135
            LRLPT  NLL+ IKDGFA+ KDLV++VMS+MGEEQIC +KD+GPK
Sbjct:  115 LRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
The following BLAST results are available for this feature:
BLAST of EY684727 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
IF5A_MANES1.582e-1482.61Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A2_NICPL4.602e-1484.44Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A2_MEDSA1.339e-1382.22Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A1_MEDSA8.679e-1378.26Eukaryotic translation initiation factor 5A-1 OS=M... [more]
IF5A4_SOLTU1.933e-1282.22Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A3_SOLLC1.933e-1282.22Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A_SENVE2.525e-1277.78Eukaryotic translation initiation factor 5A OS=Sen... [more]
IF5A5_SOLTU3.298e-1273.33Eukaryotic translation initiation factor 5A-5 OS=S... [more]
IF5A1_SOLLC3.298e-1273.33Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A1_TOBAC4.307e-1273.33Eukaryotic translation initiation factor 5A-1 OS=N... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-002-H03-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684727 ID=EY684727; Name=EY684727; organism=Citrus sinensis; type=EST; length=802bp
CTGAGGCTTCCTACCGCTCAAAATCTGCTTAGCCAGATTAAAGATGGGTT
TGCTGACCGAAAAGACCTTGTGGTGACCGTTATGTCGTCAATGGGAGAGG
AGCAGATCTGTGCCCTTAAGGACATTGGTCCTAAGAATTAACTATAATCC
CATGGCATTACCTTTGGCTGATACCAGGAGAACTCTTTCTTATGTTGCCA
ACATGGAGACTATCTACCATCCCTGTCCACAACGAACTTACATTACCGAT
GTATTTTGGCTGAGTATGGAGCTATGGAGGAGCTAGAGGGGAACCCCCGC
CCCCAAAAGCCCCGCCAACAACCCCCCACAAAGCAGACGCCGCCCAGGGG
CCGAACACCAGGATCAGGACAGCCAAGAAACGAAGCAACAGGCAGGGACG
CTGAAGGGGACAGCGAAGAAAAAAGAGACCAACACCCCACAAACCACAAC
AAAATAGCCAGCAACCCAACGAAGCAAAAGGACACAGAAGGGAGACCCAC
CACGCACAACACAGAAGGCCACAGACCCAGCCCACCCCGCCGGCCTGCGC
CGCACCGAAAACCCACGGCAAAAGAACGCCAAGGCGAACGCCGGAGCACA
CAGAACCCGCGAACGCACACAACCGCCGGGCGCCCCCCCACAGGAGAACG
AAGGCAAAGAGAAGGACAACAAAACCGAGCAAACACACGAGCAACGCAGA
AAGAGAAAAAGAAGAAGGCGAACAAGAGAACCAACACCCCATGCCACGGC
GCCCACCCGAGCACCACGACGAGGCCAACATCCACACCACCACGCCCGGA
AG
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