EY684718

Overview
NameEY684718
Unique NameEY684718
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length858
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684718 vs. ExPASy Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.528e-15
Identity = 48/88 (54.55%), Postives = 54/88 (61.36%), Query Frame = 3
Query:   51 EPAVEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXX-YEEMIKDAIVTLKEKTGSSQYAIAKFIEEKHKQLPPNFTKLMLLPSK 311
            + AVE KP++K  K K  KE                     YEEMIKDAIVTLKE+TGSSQYAI KFIEEK K+LPP F KL+LL  K
Sbjct:   24 DAAVEKKPAAKGRKTKNVKEVKEKKTVAAAPKKRTVSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLK 111          
BLAST of EY684718 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.751e-14
Identity = 50/98 (51.02%), Postives = 56/98 (57.14%), Query Frame = 3
Query:   24 ETLPQP------ESAEPAVEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEKHKQLPPNFTKLML 299
            ET+P+P         EP V +K   KA   KT K+                    YEEMIKDAIV+LKEK GSSQYAIAKFIEEK KQLP NF KL+L
Sbjct:   11 ETVPEPIVTEPTTITEPEVPEKEEPKAEVEKT-KKAKGSKPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQKQLPANFKKLLL 107          
BLAST of EY684718 vs. ExPASy Swiss-Prot
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.987e-14
Identity = 47/87 (54.02%), Postives = 53/87 (60.92%), Query Frame = 3
Query:   63 EDKPSSKAGKGK---TSKEXXXXXXXXXXXXXXXXXXXX-YEEMIKDAIVTLKEKTGSSQYAIAKFIEEKHKQLPPNFTKLMLLPSK 311
            E KP++K GK K   T+K                      YEEMIKDAIVTLKE+TGSSQYAI KFIEEKHK LPP F KL+L+  K
Sbjct:   25 EKKPAAKGGKSKKTTTAKATKKPVKAAAPTKKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLK 111          
BLAST of EY684718 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.936e-13
Identity = 43/92 (46.74%), Postives = 52/92 (56.52%), Query Frame = 3
Query:   36 QPESAEPAVEDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEKHKQLPPNFTKLMLLPSK 311
            + ++A   V+D+ +  A  GK  KE                    Y EMIKDAIVTLKE+TGSSQ+AI KFIEEK K LP NF KL+L   K
Sbjct:   14 EEQAAPETVKDEANPPAKSGKAKKETKAKKPAAPRKRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQKSLPSNFKKLLLTQLK 105          
BLAST of EY684718 vs. ExPASy Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.367e-11
Identity = 39/83 (46.99%), Postives = 46/83 (55.42%), Query Frame = 3
Query:   63 EDKPSSKAGKGKTSKEXXXXXXXXXXXXXXXXXXXXYEEMIKDAIVTLKEKTGSSQYAIAKFIEEKHKQLPPNFTKLMLLPSK 311
            + K  +KA   K  KE                    + EMI DAI TLKE+TGSSQYAI KF+E+KHKQLP NF KL+L   K
Sbjct:   18 KSKRGTKAAAVKVPKEKKKVIAAKKPKSKGTSSHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHKQLPSNFRKLLLFHLK 100          
The following BLAST results are available for this feature:
BLAST of EY684718 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
H11_ARATH3.528e-1554.55Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 ... [more]
H1_PEA1.751e-1451.02Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H12_ARATH2.987e-1454.02Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 ... [more]
H1_SOLLC1.936e-1346.74Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
H1_EUPES2.367e-1146.99Histone H1 OS=Euphorbia esula PE=2 SV=1[more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C2-003-002-G02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684718 ID=EY684718; Name=EY684718; organism=Citrus sinensis; type=EST; length=858bp
CGGACGCGTGGGTTGCGCCCTAAGAGACCCTTCCTCAACCGGAATCCGCT
GAACCGGCCGTAGAGGACAAACCGTCCTCCAAAGCCGGCAAAGGCAAGAC
CTCTAAGGAGCCCAAAGCCAAGAAAGCCGCTGCTCCGAGGAAGCCTAGAA
GCCCTCCCTCTCATCCTCCGTATGAAGAGATGATTAAGGATGCAATTGTT
ACTTTGAAAGAGAAGACCGGTTCGAGTCAGTATGCAATTGCCAAATTTAT
TGAGGAGAAGCACAAGCAGTTGCCACCCAACTTTACGAAGCTGATGCTGC
TTCCATCGAAAAACGGCCCCGCCGCGGCGGCGACCGGACCAACCCCCCCA
AACAGCGCAAGAGAGAGCCACGGGCCGCCGAGAACAAGAAGGAGAGGGGG
GGGAACGACCGAGAACCCGCCGCGAAGGGCCCCCGCCCGCCGGCGGCGCC
CCAACCGGACGAAGACGGAAAAGAACAGAGAAACCACAAGGACCAAACAG
GACAAAGGACAGCGACGGCCAGCCGAGCCCCCCGCCGACACCAGCACCGT
ACCCAGAAAAGACACAACAACAGAAGAACGCAACCGGAAAAGCACACCAA
CACACCCGCAGCACACCACGCGCCCACCAACCACAGAACACCAGAGAAGC
ACTACAAGGGGCGAACCAGAAGAGGCACGCACGCGCAGGCGAAGCGCCAA
CCGCAGCACCGCCCCAACAAGCCCCCAACACGCACCAACAAACGCGGACG
CAACCCAGCACCACCAGCGACCACGCCCCCGGACCCGCACCGCGCCCCTC
CGCAGCACCAAGCAGGGGAACACGCGCCCGCCCCACGAAGAAGGAGGACA
GAGCACAA
back to top