EY684716

Overview
NameEY684716
Unique NameEY684716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8813 contig Csv1_Contig8813:1..773. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY684716 vs. ExPASy Swiss-Prot
Match: ARFF_ARATH (Auxin response factor 6 OS=Arabidopsis thaliana GN=ARF6 PE=2 SV=2)

HSP 1 Score: 254.218 bits (648), Expect = 5.717e-67
Identity = 152/249 (61.04%), Postives = 181/249 (72.69%), Query Frame = 3
Query:    9 SAQSP---PMQAISSLCQQQSFSDSNGNPATNPIVSPLHSLLGSYAQDESSHLLNLPRSNPLIHSPTWPSKRAAVEPLFS-SGAPQCVLPSV-EQLGPPH-ANISQNSISLPPFPG-RECSIDQEGSA-DPQSHLLFGVNIEPSSLLMQNEMSSLGGVG-SNSDSTTIPFASSNYMSTAGADFSVNPEIA-PSSCIDESGFLQSPENVGQVNPPNRTFVKVYNSGSFGRSLDITNFSNYLELRRELARM 725
            SA  P   P+Q+++SLC QQSFSD+NG    NPI SPLH+LL +++QDESS LL+L R+N  + S  WPSKR AV+  F  SGA      SV EQLG  H +N+  N++SLPPFPG RECSI+QEGSA DP SHLLFGVNI+ SSLLM N MS+L  +G    DSTT+PF SSN+ +    DFS N  +  PSSCIDESGFLQS EN+G  NP + TFVKVY SGSFGRSLDI+ FS+Y ELR ELARM
Sbjct:  588 SASQPNTSPLQSMTSLCHQQSFSDTNGG--NNPI-SPLHTLLSNFSQDESSQLLHLTRTNSAMTSSGWPSKRPAVDSSFQHSGAGNNNTQSVLEQLGQSHTSNVPPNAVSLPPFPGGRECSIEQEGSASDPHSHLLFGVNIDSSSLLMPNGMSNLRSIGIEGGDSTTLPFTSSNFNN----DFSGNLAMTTPSSCIDESGFLQSSENLGSENPQSNTFVKVYKSGSFGRSLDISKFSSYHELRSELARM 829          
BLAST of EY684716 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSJ (Auxin response factor 6 OS=Oryza sativa subsp. japonica GN=ARF6 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.912e-46
Identity = 103/242 (42.56%), Postives = 150/242 (61.98%), Query Frame = 3
Query:    6 ASAQSPP--MQAISSLCQQQSFSDSNGNPATNPIVSPLHSLLGSYAQDESSHLLNLPRSNPLIHSPTWPSKRAAVEPLFSSGAPQCVLPSVEQLGPPHANISQNSISLPPFPGRECSIDQEGSADPQSHLLFGVNIEPSSLLMQNEMSSLGGVGSNSDSTTIPFASSNYMSTAGADFSVNPEIAPSSCIDESGFLQSPENVGQVNPPNRTFVKVYNSGSFGRSLDITNFSNYLELRRELARM 725
            ++ QS P  +Q +S   QQ +F D+N +  +   VS +H  L S+  + +S L  +PR  P+  S  W SKR AVE   +S  P  +   +E      ++I QNS +L P PGREC +DQ+GS+DPQ+H LFGVNI+  SLLMQ+ + SL    S+S   TIP+++SN++S +  D+ ++  +    C+DESG++   +N  QV  P+ TFVKVY SG+ GR LDIT FS+Y ELR E+ R+
Sbjct:  574 STPQSTPSTLQTVSPFSQQHNFPDTNISCLSPSNVSSMHDTLRSFPSEAASDLPGVPRITPVPVSDPWSSKRVAVESTITS-RPHDISSQIENFDLTPSSIPQNS-TLAPLPGRECLVDQDGSSDPQNHFLFGVNIDSQSLLMQDGIPSLHNENSSS---TIPYSTSNFLSPSQDDYPLSQTLTTPGCLDESGYVPCSDNADQVKRPHATFVKVYKSGTVGRLLDITRFSSYHELRSEVGRL 810          
BLAST of EY684716 vs. ExPASy Swiss-Prot
Match: ARFF_ORYSI (Auxin response factor 6 OS=Oryza sativa subsp. indica GN=ARF6 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.912e-46
Identity = 103/242 (42.56%), Postives = 150/242 (61.98%), Query Frame = 3
Query:    6 ASAQSPP--MQAISSLCQQQSFSDSNGNPATNPIVSPLHSLLGSYAQDESSHLLNLPRSNPLIHSPTWPSKRAAVEPLFSSGAPQCVLPSVEQLGPPHANISQNSISLPPFPGRECSIDQEGSADPQSHLLFGVNIEPSSLLMQNEMSSLGGVGSNSDSTTIPFASSNYMSTAGADFSVNPEIAPSSCIDESGFLQSPENVGQVNPPNRTFVKVYNSGSFGRSLDITNFSNYLELRRELARM 725
            ++ QS P  +Q +S   QQ +F D+N +  +   VS +H  L S+  + +S L  +PR  P+  S  W SKR AVE   +S  P  +   +E      ++I QNS +L P PGREC +DQ+GS+DPQ+H LFGVNI+  SLLMQ+ + SL    S+S   TIP+++SN++S +  D+ ++  +    C+DESG++   +N  QV  P+ TFVKVY SG+ GR LDIT FS+Y ELR E+ R+
Sbjct:  574 STPQSTPSTLQTVSPFSQQHNFPDTNISCLSPSNVSSMHDTLRSFPSEAASDLPGVPRITPVPVSDPWSSKRVAVESTITS-RPHDISSQIENFDLTPSSIPQNS-TLAPLPGRECLVDQDGSSDPQNHFLFGVNIDSQSLLMQDGIPSLHNENSSS---TIPYSTSNFLSPSQDDYPLSQTLTTPGCLDESGYVPCSDNADQVKRPHATFVKVYKSGTVGRLLDITRFSSYHELRSEVGRL 810          
BLAST of EY684716 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSJ (Auxin response factor 17 OS=Oryza sativa subsp. japonica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 5.563e-46
Identity = 108/241 (44.81%), Postives = 154/241 (63.90%), Query Frame = 3
Query:   12 AQSPPM--QAISSLCQQQSFSDSNGNPATNPIVSPLHSLLGSYAQDESSHLLNLPRSNPLIHSPTWPSKRAAVEPLFSSGAPQCVLPSVEQLGPPHANISQNSISLPPFPGRECSIDQEGSADPQSHLLFGVNIEPSSLLMQNEMSSLGGVGSNSDSTTIPFASSNYMSTAGADFSVNPEIAPSSCIDESGFLQSPENVGQV-NPPNRTFVKVYNSGSFGRSLDITNFSNYLELRRELARM 725
            +QS PM  Q +    Q QS+ D++ +  +    S +H+ L  ++ +  SHL ++PR   +     W SKR AVE L  S  PQ V   +EQL     +I Q+S +L P PGR C +DQ+G++DPQ+HLLFGVNI+  SLLMQ  + SL G    +DST IP+++SN++S +  DF ++  ++ + C+DESG++   +N  QV N P  TFVKVY SG++GRSLDIT FS+Y ELRREL R+
Sbjct:  586 SQSSPMTLQTVLPFSQPQSYPDTSMSSLSPSNTSTMHNALRPFSSEAPSHL-SMPRPTAVPVPDPWSSKRVAVESLLPS-RPQ-VTSQMEQLDSTAPSIPQSS-ALAPLPGRGCLVDQDGNSDPQNHLLFGVNIDSQSLLMQGGIPSLQG---ENDSTAIPYSTSNFLSPSQNDFPLDQTLSSADCLDESGYVPCSQNSDQVINRPPATFVKVYKSGTYGRSLDITRFSSYHELRRELGRL 819          
BLAST of EY684716 vs. ExPASy Swiss-Prot
Match: ARFQ_ORYSI (Auxin response factor 17 OS=Oryza sativa subsp. indica GN=ARF17 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.489e-46
Identity = 108/241 (44.81%), Postives = 153/241 (63.49%), Query Frame = 3
Query:   12 AQSPPM--QAISSLCQQQSFSDSNGNPATNPIVSPLHSLLGSYAQDESSHLLNLPRSNPLIHSPTWPSKRAAVEPLFSSGAPQCVLPSVEQLGPPHANISQNSISLPPFPGRECSIDQEGSADPQSHLLFGVNIEPSSLLMQNEMSSLGGVGSNSDSTTIPFASSNYMSTAGADFSVNPEIAPSSCIDESGFLQSPENVGQV-NPPNRTFVKVYNSGSFGRSLDITNFSNYLELRRELARM 725
            +QS PM  Q +    Q QS+ D++ +  +    S +H+ L  ++ +  SHL ++PR   +     W SKR AVE L  S  PQ V   +EQL     +I Q+S +L P PGR C +DQ+G++DPQ+HLLFGVNI+  SLLMQ  + SL G    +DST IP+++SN++S    DF ++  ++ + C+DESG++   +N  QV N P  TFVKVY SG++GRSLDIT FS+Y ELRREL R+
Sbjct:  586 SQSSPMTLQTVLPFSQPQSYPDTSMSSLSPSNTSTMHNALRPFSSEAPSHL-SMPRPTAVPVPDPWSSKRVAVESLLPS-RPQ-VTSQMEQLDSTAPSIPQSS-ALAPLPGRGCLVDQDGNSDPQNHLLFGVNIDSQSLLMQGGIPSLQG---ENDSTAIPYSTSNFLSPLQNDFPLDQTLSSADCLDESGYVPCSQNSDQVINRPPATFVKVYKSGTYGRSLDITRFSSYHELRRELGRL 819          
BLAST of EY684716 vs. ExPASy Swiss-Prot
Match: ARFY_ORYSJ (Auxin response factor 25 OS=Oryza sativa subsp. japonica GN=ARF25 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 5.231e-28
Identity = 91/242 (37.60%), Postives = 126/242 (52.07%), Query Frame = 3
Query:    6 ASAQSPPMQAISSLCQQQSFSDSNGNPATNPIVSPLHSLLGSYAQDESSHLLNLPRSNPLIHSPTWPSKRAAVEPLFSSGAPQCVLPSVEQLGPPHANISQNSISLPPFPGRECSIDQEGSADPQSHLLFGVNIEPSSLLMQNEMSSL-GGVGSNSDSTTIPFASSNYMSTAGADFSVNPEIAPSSCIDESGFLQSPENVGQVNPPN-RTFVKVYNSGSFGRSLDITNFSNYLELRRELARM 725
            AS      QA SSL    SF + N     +     LH+   +++  E+S+LL LPRS+ L+ S  WPSKR  +E      AP  + P +E++   H  IS    + PP   R CSI Q+  AD ++ LL       SS  +Q+ M+S+       +D+  IP      +  +GAD +    +A S+C+ ESG      N+  VNP    TFVKVY SGS GRSLDI+ FS+Y ELR EL R+
Sbjct:  573 ASESGSAPQAQSSLLSGSSFYNQNLLEGNSDPPLHLHNNFHNFSNQEASNLLILPRSSQLMASDGWPSKRLTLESAVHPEAPS-MHPKIEKVN--HQGISHFPGAFPPQSARGCSIVQDCRADAENRLL------SSSFELQDGMTSIITDANRETDTMAIPL-----LRYSGADLTTENTLATSNCLGESGTFNPLNNIS-VNPSQGATFVKVYKSGSLGRSLDISRFSSYCELRSELERL 799          
BLAST of EY684716 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSJ (Auxin response factor 12 OS=Oryza sativa subsp. japonica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.579e-16
Identity = 76/235 (32.34%), Postives = 108/235 (45.96%), Query Frame = 3
Query:   24 PMQAISSLCQQQSFSDSNGNPATNPIVSPLHSLLGSYAQDESSHLLNLPRSNPLIHSPTWPSKRAAVEPLFSSGAPQCVLPSVEQLGPPHANISQNSISLPPFPGRECSIDQEGSADPQSHLLFGVNIEPSSLLMQNEMSSLGGVGSNSDSTTIPFASSNYMSTAGADFSVNPEIAPSSCIDES-GFLQSPENVGQVNPPNRTFVKVYNSGSFGRSLDITNFSNYLELRRELARM 725
            P    S L ++  FSD N N ++    S   ++L S     SS  ++L R N  + S     ++ A +  F          SV    P                 ++ S++ +   D Q+  LF   ++ SSLL  N + +L    S+ + +TIP + S Y+  A              C+D+S G LQ   N G+ +P  RTFVKVY SGS GRSLDIT FSNY ELR EL +M
Sbjct:  549 PTSLPSHLREKFGFSDPNANSSSFITSSSSDNMLDSSFLQGSSKAVDLSRFNQPVASEQQQQQQQAWKQKFMGSQSVSFGGSVLHNSPT---------------SKDGSVENKIGRDVQNQSLFSPQVDSSSLLY-NMVPNLTSNVSDGNLSTIP-SGSTYLQNA-----------MYGCLDDSSGLLQ---NTGENDPATRTFVKVYKSGSVGRSLDITRFSNYAELREELGQM 752          
BLAST of EY684716 vs. ExPASy Swiss-Prot
Match: ARFL_ORYSI (Auxin response factor 12 OS=Oryza sativa subsp. indica GN=ARF12 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.336e-15
Identity = 76/240 (31.67%), Postives = 110/240 (45.83%), Query Frame = 3
Query:   24 PMQAISSLCQQQSFSDSNGNPATNPIVSPLHSLLGSYAQDESSHLLNLPRSNPLIHSP-----TWPSKRAAVEPLFSSGAPQCVLPSVEQLGPPHANISQNSISLPPFPGRECSIDQEGSADPQSHLLFGVNIEPSSLLMQNEMSSLGGVGSNSDSTTIPFASSNYMSTAGADFSVNPEIAPSSCIDES-GFLQSPENVGQVNPPNRTFVKVYNSGSFGRSLDITNFSNYLELRRELARM 725
            P    S L ++  FSD N N ++    S   ++L S     SS  ++L R N  + S       W  K    + +   G+                 +  NS +      ++ S++ +   D Q+  LF   ++ SSLL  N + +L    S+ + +TIP + S Y+  A              C+D+S G LQ   N G+ +P  RTFVKVY SGS GRSLDIT FSNY ELR EL +M
Sbjct:  549 PTSLPSHLREKFGFSDPNANSSSFITSSSSDNMLDSSFLQGSSKAVDLSRFNQPVASEQQQQQAWKQKFMGSQSVSFGGS-----------------VLHNSPT-----SKDGSVENKIGRDVQNQSLFSPQVDSSSLLY-NMVPNLTSNVSDGNLSTIP-SGSTYLQNA-----------MYGCLDDSSGLLQ---NTGENDPATRTFVKVYKSGSVGRSLDITRFSNYAELREELGQM 750          
BLAST of EY684716 vs. ExPASy Swiss-Prot
Match: ARFH_ARATH (Auxin response factor 8 OS=Arabidopsis thaliana GN=ARF8 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.406e-11
Identity = 51/164 (31.10%), Postives = 84/164 (51.22%), Query Frame = 3
Query:  252 QCVLP---SVEQLGPPHANISQNSISLPP-FPGRECSIDQEGSADPQSHLLFGVNIEPSSLLMQNEMSSLGGVGSNSDSTTIPFASSNYMSTAGADFSVNPEIAPSSCIDESGFLQSPENVGQVNPPNRT--FVKVYNSGSFGRSLDITNFSNYLELRRELARM 725
            Q VLP   + E   P  +N     +SLP  +PG+  +++     +PQ+  LFGV+ + S L + + +        +++++ +    S + ++              SC+ ++   +     GQ+N  N+T  FVKVY SGS GRSLDI+ FS+Y ELR EL +M
Sbjct:  592 QSVLPEQLTTEGWSPKASNTFSEPLSLPQAYPGKSLALEP---GNPQNPSLFGVDPD-SGLFLPSTVPRFASSSGDAEASPMSLTDSGFQNSL------------YSCMQDTTH-ELLHGAGQINSSNQTKNFVKVYKSGSVGRSLDISRFSSYHELREELGKM 738          
The following BLAST results are available for this feature:
BLAST of EY684716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
ARFF_ARATH5.717e-6761.04Auxin response factor 6 OS=Arabidopsis thaliana GN... [more]
ARFF_ORYSJ1.912e-4642.56Auxin response factor 6 OS=Oryza sativa subsp. jap... [more]
ARFF_ORYSI1.912e-4642.56Auxin response factor 6 OS=Oryza sativa subsp. ind... [more]
ARFQ_ORYSJ5.563e-4644.81Auxin response factor 17 OS=Oryza sativa subsp. ja... [more]
ARFQ_ORYSI9.489e-4644.81Auxin response factor 17 OS=Oryza sativa subsp. in... [more]
ARFY_ORYSJ5.231e-2837.60Auxin response factor 25 OS=Oryza sativa subsp. ja... [more]
ARFL_ORYSJ1.579e-1632.34Auxin response factor 12 OS=Oryza sativa subsp. ja... [more]
ARFL_ORYSI1.336e-1531.67Auxin response factor 12 OS=Oryza sativa subsp. in... [more]
ARFH_ARATH3.406e-1131.10Auxin response factor 8 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C2-003-002-F11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684716 ID=EY684716; Name=EY684716; organism=Citrus sinensis; type=EST; length=774bp
CCCACGCGTCCGCTCAGTCACCACCAATGCAAGCTATCTCTTCACTCTGC
CAGCAGCAGAGCTTCTCTGATTCAAATGGGAACCCTGCGACAAATCCTAT
TGTTTCTCCTCTGCATAGTCTCTTGGGTTCATATGCCCAGGATGAATCAT
CCCACCTGCTTAACTTGCCGAGAAGCAATCCCCTGATACATTCTCCTACC
TGGCCTTCTAAGCGAGCAGCAGTTGAACCTCTTTTCTCTTCTGGAGCTCC
TCAATGTGTTCTGCCCTCCGTGGAGCAATTGGGGCCACCTCATGCAAATA
TCTCTCAGAATTCTATTTCATTGCCCCCTTTTCCTGGTAGGGAGTGTTCG
ATAGACCAGGAAGGGAGTGCTGATCCACAGAGCCATCTTTTATTTGGGGT
TAACATAGAGCCTTCTTCACTTCTGATGCAGAATGAGATGTCAAGCCTTG
GGGGAGTTGGGAGCAATAGTGACTCCACAACTATACCCTTTGCTTCTTCT
AATTATATGAGCACTGCAGGCGCTGATTTCTCTGTTAATCCAGAAATTGC
ACCTTCCAGTTGCATTGATGAATCAGGTTTCCTGCAGTCTCCAGAAAATG
TGGGCCAAGTAAACCCACCCAACAGAACCTTTGTTAAAGTTTACAATTCG
GGTTCCTTCGGTAGATCACTGGATATCACCAATTTCAGTAACTACCTTGA
ACTGCGCAGGGAACTAGCTCGCATGGTTTGGCCTTGAAGGCCATTTTGAA
AGACCCCCTGAAAATAAGGTGGCA
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