EY684658

Overview
NameEY684658
Unique NameEY684658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length869
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA_PRUDU (Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 8.400e-97
Identity = 178/197 (90.36%), Postives = 179/197 (90.86%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQ VDWCPT FKCGINYQPPTVVPGGDLAKV RA  MIS S S AE  SRI H F L  A   F
Sbjct:  208 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA1_PEA (Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 8.400e-97
Identity = 178/197 (90.36%), Postives = 179/197 (90.86%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQ VDWCPT FKCGINYQPPTVVPGGDLAKV RA  MIS S S AE  SRI H F L  A   F
Sbjct:  208 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA1_ANEPH (Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 352.443 bits (903), Expect = 1.871e-96
Identity = 177/197 (89.85%), Postives = 179/197 (90.86%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNSAFEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQ VDWCPT FKCGINYQPPTVVPGGDLAKV RA  MIS S S AE  SRI H F L  A   F
Sbjct:  208 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA4_GOSHI (Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 2.444e-96
Identity = 177/197 (89.85%), Postives = 178/197 (90.36%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQ VDWCPT FKCGINYQPPTVVPGGDLAKV RA  MIS S S AE  SRI H F L      F
Sbjct:  208 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYTKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA2_GOSHI (Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 352.058 bits (902), Expect = 2.444e-96
Identity = 177/197 (89.85%), Postives = 179/197 (90.86%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVA+IKTKRTIQ VDWCPT FKCGINYQPPTVVPGGDLAKV RA  MIS S S AE  SRI H F L  A   F
Sbjct:  208 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVASIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA1_GOSHI (Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 350.517 bits (898), Expect = 7.111e-96
Identity = 176/197 (89.34%), Postives = 178/197 (90.36%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEF+TNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQ  DWCPT FKCGINYQPPTVVPGGDLAKV RA  MIS S S AE  SRI H F L  A   F
Sbjct:  208 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFRTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFADWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA6_ARATH (Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=TUBA6 PE=2 SV=1)

HSP 1 Score: 350.132 bits (897), Expect = 9.287e-96
Identity = 176/197 (89.34%), Postives = 178/197 (90.36%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRRSL+IERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRTIQ VDWCPT FKCGINYQPPTVVPGGDLAKV RA  MIS S S AE  SRI H F L  A   F
Sbjct:  208 AIYDICRRSLNIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA2_ARATH (Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thaliana GN=TUBA2 PE=2 SV=1)

HSP 1 Score: 349.747 bits (896), Expect = 1.213e-95
Identity = 176/197 (89.34%), Postives = 177/197 (89.85%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRRSL IERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEP+SMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAV TIKTKRTIQ VDWCPT FKCGINYQPPTVVPGGDLAKV RA  MIS S S AE  SRI H F L  A   F
Sbjct:  208 AIYDICRRSLSIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPASMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVGTIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA3_HORVU (Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 PE=2 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.702e-95
Identity = 175/197 (88.83%), Postives = 177/197 (89.85%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV EFQTNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQ VDWCPT FKCGINYQPP+VVPGGDLAKV RA  MIS S S  E  SRI H F L  A   F
Sbjct:  208 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAF 404
[Close]
BLAST of EY684658 vs. ExPASy Swiss-Prot
Match: TBA2_MAIZE (Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV=1)

HSP 1 Score: 348.591 bits (893), Expect = 2.702e-95
Identity = 175/197 (88.83%), Postives = 177/197 (89.85%), Query Frame = 3 
Query:   12 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAFHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQXVDWCPTXFKCGINYQPPTVVPGGDLAKVHRADGMISKSGSGAETLSRIRHPFHLPVATAGF 602
            AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDV EFQTNLVPYPRIHFMLSSYAPVISAEKA+HEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQ VDWCPT FKCGINYQPP+VVPGGDLAKV RA  MIS S S  E  SRI H F L  A   F
Sbjct:  208 AIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPSVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDHKFDLMYAKRAF 404
The following BLAST results are available for this feature:
BLAST of EY684658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
TBA_PRUDU8.400e-9790.36Tubulin alpha chain OS=Prunus dulcis GN=TUBA PE=2 ... [more]
TBA1_PEA8.400e-9790.36Tubulin alpha-1 chain OS=Pisum sativum GN=TUBA1 PE... [more]
TBA1_ANEPH1.871e-9689.85Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUB... [more]
TBA4_GOSHI2.444e-9689.85Tubulin alpha-4 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA2_GOSHI2.444e-9689.85Tubulin alpha-2 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA1_GOSHI7.111e-9689.34Tubulin alpha-1 chain OS=Gossypium hirsutum PE=2 S... [more]
TBA6_ARATH9.287e-9689.34Tubulin alpha-6 chain OS=Arabidopsis thaliana GN=T... [more]
TBA2_ARATH1.213e-9589.34Tubulin alpha-2/alpha-4 chain OS=Arabidopsis thali... [more]
TBA3_HORVU2.702e-9588.83Tubulin alpha-3 chain OS=Hordeum vulgare GN=TUBA3 ... [more]
TBA2_MAIZE2.702e-9588.83Tubulin alpha-2 chain OS=Zea mays GN=TUBA2 PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-015-G11-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684658 ID=EY684658; Name=EY684658; organism=Citrus sinensis; type=EST; length=869bp
CCACGCGTCCGGCCATCTATGATATCTGCAGGCGCTCTCTTGACATTGAG
CGCCCCACTTACACCAATCTCAACCGACTTGTCTCTCAGGTGATCTCATC
CCTCACTGCCTCTTTGAGGTTTGATGGAGCTCTGAATGTGGATGTGACTG
AGTTCCAGACCAATTTGGTTCCCTATCCAAGGATCCATTTCATGCTCTCC
TCTTATGCCCCAGTTATCTCTGCAGAGAAGGCATTCCATGAGCAACTTTC
AGTTGCTGAGATCACCAACAGTGCTTTTGAGCCATCATCCATGATGGCCA
AATGTGACCCTCGTCATGGCAAGTATATGGCCTGCTGTTTGATGTATCGT
GGTGATGTTGTGCCTAAGGATGTGAATGCAGCTGTGGCCACCATCAAGAC
CAAGCGCACAATTCAGNTTGTTGACTGGTGCCCTACTGNATTCAAGTGTG
GTATCAACTATCAGCCACCAACTGTGGTCCCTGGCGGTGACCTTGCCAAG
GTGCACAGGGCTGACGGCATGATTTCCAAATCCGGCAGCGGGGCGGAGAC
GCTGTCGCGCATAAGACATCCGTTCCACCTACCCGTTGCCACAGCCGGCT
TCCGTGCCACAGACAAGCCGCCCACCCAAACCAAACACCCGACCGGACCC
CCACCACCACCGAAACCCCCCAACCGCACCCACCACGAGGAAGGGGCACG
GGGCGGGACACGGAAAGAGCCGACCATAAAAGACGCGACCGTGCCGAGAC
TGAGCAGCCGCAAGGAGGATCGGTCGGCACGCCGGGTGCGCTGGGTGGAC
AGCCCGGGCGTGGCACAGACGAGAGCGCGCCAGGGCGCCAGTCTGACCAC
CGAGGCGAACAGGAGGAGA
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