EY710176 | Citrus Genome Database

Overview


Name	EY710176
Unique Name	EY710176
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	466

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY710176 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 3.666e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2

Query:    2 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 274
            KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:    9 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of EY710176 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 3.666e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2

Query:    2 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 274
            KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:    9 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of EY710176 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 3.666e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2

Query:    2 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 274
            KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:    9 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of EY710176 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 3.666e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2

Query:    2 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 274
            KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:    9 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of EY710176 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 3.666e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2

Query:    2 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 274
            KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:    9 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of EY710176 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 3.666e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2

Query:    2 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 274
            KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:    9 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of EY710176 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 180.259 bits (456), Expect = 3.666e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2

Query:    2 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 274
            KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:    9 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of EY710176 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 3.666e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2

Query:    2 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 274
            KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:    9 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of EY710176 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 3.666e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2

Query:    2 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 274
            KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:    9 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

[Close]

BLAST of EY710176 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 3.666e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 2

Query:    2 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 274
            KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY
Sbjct:    9 KGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRTLY 99

The following BLAST results are available for this feature:

BLAST of EY710176 vs. ExPASy Swiss-Prot

BLAST of EY710176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108


Match Name	E-value	Identity	Description
H4_SILLA	3.666e-45	100.00	Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3	[more]
H4_PEA	3.666e-45	100.00	Histone H4 OS=Pisum sativum PE=1 SV=2	[more]
H4_MAIZE	3.666e-45	100.00	Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2	[more]
H4_LOLTE	3.666e-45	100.00	Histone H4 OS=Lolium temulentum PE=3 SV=2	[more]
H4_FLATR	3.666e-45	100.00	Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3	[more]
H4_EUCGL	3.666e-45	100.00	Histone H4 OS=Eucalyptus globulus PE=3 SV=3	[more]
H4_CHEMJ	3.666e-45	100.00	Histone H4 OS=Chelidonium majus PE=3 SV=3	[more]
H4_ARATH	3.666e-45	100.00	Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE...	[more]
H42_WHEAT	3.666e-45	100.00	Histone H4 variant TH091 OS=Triticum aestivum PE=3...	[more]
H41_WHEAT	3.666e-45	100.00	Histone H4 variant TH011 OS=Triticum aestivum PE=3...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-088-G07-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY710176 ID=EY710176; Name=EY710176; organism=Citrus sinensis; type=EST; length=466bp
CAAGGGATTGGGAAAGGGAGGCGCCAAGCGTCACCGTAAGGTGCTTCGCG
ATAACATTCAGGGTATCACAAAGCCGGCAATCCGGCGTTTGGCTCGTAGA
GGTGGAGTCAAGCGTATCAGCGGCTTGATCTACGAGGAGACACGTGGCGT
CCTGAAGATATTCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTG
AGCACGCCAGGAGAAAGACCGTGACCGCGATGGACGTCGTTTACGCTCTC
AAGAGGCAGGGCAGGACTCTTTATGGATTTGGGGGTTAATTGTCTTAGGG
TTCTGGAATTAAATGTTAATAGATCTTGACTCTAGATCTTGATCTGGTAG
ATGGGGCTCTTAGTAGTTTGTTATTAAGGTTGCTGCTTTGTAATTCTATC
AAGTTAAATCTTATCTTTTAAGGAGGACAANGGAACTGAGTCCCCACTAT
ATACATTAATGACATG